com.ibm.fhir.server.util.FHIRRestBundleHelper Maven / Gradle / Ivy
/*
* (C) Copyright IBM Corp. 2021
*
* SPDX-License-Identifier: Apache-2.0
*/
package com.ibm.fhir.server.util;
import static com.ibm.fhir.core.FHIRConstants.EXT_BASE;
import static com.ibm.fhir.model.type.String.string;
import static javax.servlet.http.HttpServletResponse.SC_ACCEPTED;
import java.time.format.DateTimeFormatter;
import java.time.format.DateTimeFormatterBuilder;
import java.util.ArrayList;
import java.util.Collections;
import java.util.Comparator;
import java.util.LinkedHashMap;
import java.util.List;
import java.util.Map;
import java.util.logging.Level;
import java.util.logging.Logger;
import javax.ws.rs.core.MultivaluedMap;
import javax.ws.rs.core.Response.Status;
import com.ibm.fhir.config.FHIRRequestContext;
import com.ibm.fhir.exception.FHIROperationException;
import com.ibm.fhir.model.patch.FHIRPatch;
import com.ibm.fhir.model.resource.Bundle;
import com.ibm.fhir.model.resource.Bundle.Entry;
import com.ibm.fhir.model.resource.Bundle.Entry.Request;
import com.ibm.fhir.model.resource.OperationOutcome;
import com.ibm.fhir.model.resource.OperationOutcome.Issue;
import com.ibm.fhir.model.resource.Parameters;
import com.ibm.fhir.model.resource.Resource;
import com.ibm.fhir.model.type.Code;
import com.ibm.fhir.model.type.CodeableConcept;
import com.ibm.fhir.model.type.Extension;
import com.ibm.fhir.model.type.code.BundleType;
import com.ibm.fhir.model.type.code.HTTPVerb;
import com.ibm.fhir.model.type.code.IssueSeverity;
import com.ibm.fhir.model.type.code.IssueType;
import com.ibm.fhir.model.util.FHIRUtil;
import com.ibm.fhir.model.util.ModelSupport;
import com.ibm.fhir.path.patch.FHIRPathPatch;
import com.ibm.fhir.persistence.context.FHIRPersistenceEvent;
import com.ibm.fhir.search.exception.FHIRSearchException;
import com.ibm.fhir.server.exception.FHIRRestBundledRequestException;
import com.ibm.fhir.server.rest.FHIRRestInteraction;
import com.ibm.fhir.server.rest.FHIRRestInteractionCreate;
import com.ibm.fhir.server.rest.FHIRRestInteractionDelete;
import com.ibm.fhir.server.rest.FHIRRestInteractionHistory;
import com.ibm.fhir.server.rest.FHIRRestInteractionInvoke;
import com.ibm.fhir.server.rest.FHIRRestInteractionIssue;
import com.ibm.fhir.server.rest.FHIRRestInteractionPatch;
import com.ibm.fhir.server.rest.FHIRRestInteractionRead;
import com.ibm.fhir.server.rest.FHIRRestInteractionSearch;
import com.ibm.fhir.server.rest.FHIRRestInteractionUpdate;
import com.ibm.fhir.server.rest.FHIRRestInteractionVRead;
import com.ibm.fhir.server.rest.FHIRRestInteractionValidationResponse;
import com.ibm.fhir.server.spi.operation.FHIROperationContext;
import com.ibm.fhir.server.spi.operation.FHIRResourceHelpers;
/**
* Helper for processing bundle entries. Does not perform any persistence operations,
* but instead helps to translate the request into a {@link FHIRRestInteraction} implementation
* which can be executed at a later time.
*/
public class FHIRRestBundleHelper {
private static final Logger log =
java.util.logging.Logger.getLogger(FHIRRestBundleHelper.class.getName());
private static final String LOCAL_REF_PREFIX = "urn:";
private static final com.ibm.fhir.model.type.String SC_ACCEPTED_STRING = string(Integer.toString(SC_ACCEPTED));
// Constant for indicating the need to validate a resource
public static final boolean DO_VALIDATION = true;
// Constant for indicating whether an update can be skipped when the requested update resource matches the existing one
public static final boolean SKIPPABLE_UPDATE = true;
public static final DateTimeFormatter PARSER_FORMATTER = new DateTimeFormatterBuilder()
.appendPattern("EEE")
.optionalStart()
// ANSIC date time format for If-Modified-Since
.appendPattern(" MMM dd HH:mm:ss yyyy")
.optionalEnd()
.optionalStart()
// Touchstone date time format for If-Modified-Since
.appendPattern(", dd-MMM-yy HH:mm:ss")
.optionalEnd().toFormatter();
// Access to helper functions for creating event objects
private final FHIRResourceHelpers helpers;
/**
* Public constructor
* @param helpers
*/
public FHIRRestBundleHelper(FHIRResourceHelpers helpers) {
this.helpers = helpers;
}
/**
* Construct a FHIROperationException indicating the given resourceTypeName
* is not supported
* @param resourceTypeName
* @return
*/
private FHIROperationException buildUnsupportedResourceTypeException(String resourceTypeName) {
String msg = "'" + resourceTypeName + "' is not a valid resource type.";
Issue issue = OperationOutcome.Issue.builder()
.severity(IssueSeverity.FATAL)
.code(IssueType.NOT_SUPPORTED.toBuilder()
.extension(Extension.builder()
.url(EXT_BASE + "not-supported-detail")
.value(Code.of("resource"))
.build())
.build())
.details(CodeableConcept.builder().text(string(msg)).build())
.build();
return new FHIROperationException(msg).withIssue(issue);
}
/**
* Construct a FHIROperationException with an IssueSeverity of FATAL
* @param msg
* @param issueType
* @return
*/
private FHIROperationException buildRestException(String msg, IssueType issueType) {
return buildRestException(msg, issueType, IssueSeverity.FATAL);
}
/**
* Construct a FHIROperationException configured with an issue defined
* using the severity, issueType and msg parameters
* @param msg
* @param issueType
* @param severity
* @return
*/
private FHIROperationException buildRestException(String msg, IssueType issueType, IssueSeverity severity) {
return new FHIROperationException(msg).withIssue(buildOperationOutcomeIssue(severity, issueType, msg));
}
/**
* Build an OperationOutcomeIssue with the respective values for some of the fields.
* @param severity
* @param type
* @param msg
* @return
*/
private OperationOutcome.Issue buildOperationOutcomeIssue(IssueSeverity severity, IssueType type, String msg) {
return OperationOutcome.Issue.builder()
.severity(severity)
.code(type)
.details(CodeableConcept.builder().text(string(msg)).build())
.build();
}
/**
* Translate each bundle entry into a FHIRRestOperation implementation which can then
* be executed in a particular order. No persistance operations are performed at this
* stage.
* @param requestBundle
* the bundle containing the request entries
* @param validationResponseEntries
* the response entries with errors/warnings constructed during validation
* @param failFast
* a boolean value indicating if processing should stop on first failure
* @param bundleRequestCorrelationId
* the bundle request correlation ID
* @param skippableUpdates
* if true, and the bundle contains an update for which the resource content in the update matches the existing
* resource on the server, then skip the update; if false, then always attempt the updates specified in the bundle
* @return a list of FHIRRestInteraction objects to be processed in order
* @throws Exception
*/
public List translateBundleEntries(Bundle requestBundle, Map validationResponseEntries,
boolean failFast, String bundleRequestCorrelationId, boolean skippableUpdates) throws Exception {
log.entering(this.getClass().getName(), "translateBundleEntries");
// The list of operations to execute, in the order we want to execute them
List result = new ArrayList<>(requestBundle.getEntry().size());
try {
// Group the request entries by request method; LinkedHashMap because order is important
Map> requestEntriesByMethod = new LinkedHashMap<>(6);
requestEntriesByMethod.put(HTTPVerb.Value.DELETE, new ArrayList<>());
requestEntriesByMethod.put(HTTPVerb.Value.POST, new ArrayList<>());
requestEntriesByMethod.put(HTTPVerb.Value.PUT, new ArrayList<>());
requestEntriesByMethod.put(HTTPVerb.Value.GET, new ArrayList<>());
requestEntriesByMethod.put(HTTPVerb.Value.PATCH, new ArrayList<>());
requestEntriesByMethod.put(HTTPVerb.Value.HEAD, new ArrayList<>());
for (int i = 0; i < requestBundle.getEntry().size(); i++) {
if (validationResponseEntries.containsKey(i) &&
!validationResponseEntries.get(i).getResponse().getStatus().equals(SC_ACCEPTED_STRING)) {
// validation marked this entry as invalid, so wrap the validation response entry and skip it, but provide a description
// so it gets logged properly
final Request request = requestBundle.getEntry().get(i).getRequest();
final long initialTime = System.currentTimeMillis();
final String method = request != null && request.getMethod() != null ? request.getMethod().getValue() : "null";
final String requestURL = request != null && request.getUrl() != null ? request.getUrl().getValue() : "null";
final StringBuilder requestDescription = new StringBuilder();
requestDescription.append("entryIndex:[");
requestDescription.append(i);
requestDescription.append("] correlationId:[");
requestDescription.append(bundleRequestCorrelationId);
requestDescription.append("] method:[");
requestDescription.append(method);
requestDescription.append("] uri:[");
requestDescription.append(requestURL);
requestDescription.append("]");
result.add(new FHIRRestInteractionValidationResponse(i, validationResponseEntries.get(i), requestDescription.toString(), initialTime));
continue;
}
Entry entry = requestBundle.getEntry().get(i);
requestEntriesByMethod.get(entry.getRequest().getMethod().getValueAsEnum()).add(i);
}
if (log.isLoggable(Level.FINE)) {
log.fine("Bundle request indices to be processed: " +
"DELETE" + requestEntriesByMethod.get(HTTPVerb.Value.DELETE) + ", " +
"POST" + requestEntriesByMethod.get(HTTPVerb.Value.POST) + ", " +
"PUT" + requestEntriesByMethod.get(HTTPVerb.Value.PUT) + ", " +
"GET" + requestEntriesByMethod.get(HTTPVerb.Value.GET) + ", " +
"PATCH" + requestEntriesByMethod.get(HTTPVerb.Value.PATCH) + ", " +
"HEAD" + requestEntriesByMethod.get(HTTPVerb.Value.HEAD));
}
// Translate the individual bundle entry requests into corresponding FHIRRestOperation implementations
for (Map.Entry> methodIndices : requestEntriesByMethod.entrySet()) {
HTTPVerb.Value httpMethod = methodIndices.getKey();
List entryIndices = methodIndices.getValue();
if (log.isLoggable(Level.FINER)) {
log.finer("Beginning processing for method: " + httpMethod);
}
// For PUT and DELETE requests, we need to sort the indices by the request url path value.
if (httpMethod == HTTPVerb.Value.PUT || httpMethod == HTTPVerb.Value.DELETE) {
sortBundleRequestEntries(requestBundle, entryIndices);
if (log.isLoggable(Level.FINER)) {
log.finer("Sorted bundle request indices to be processed: "
+ entryIndices.toString());
}
}
// Now visit each of the request entries using the list of indices obtained above.
for (Integer entryIndex : entryIndices) {
Entry requestEntry = requestBundle.getEntry().get(entryIndex);
Entry.Request request = requestEntry.getRequest();
StringBuilder requestDescription = new StringBuilder();
long initialTime = System.currentTimeMillis();
try {
final FHIRUrlParser requestURL = new FHIRUrlParser(request.getUrl().getValue());
final BundleType.Value bundleType = requestBundle.getType().getValueAsEnum();
// Build the description of the request for use in logging start/end later
requestDescription.append("entryIndex:[");
requestDescription.append(entryIndex);
requestDescription.append("] correlationId:[");
requestDescription.append(bundleRequestCorrelationId);
requestDescription.append("] method:[");
requestDescription.append(request.getMethod().getValue());
requestDescription.append("] uri:[");
requestDescription.append(request.getUrl().getValue());
requestDescription.append("]");
// Construct the absolute requestUri to be used for any response bundles associated
// with history and search requests.
final String absoluteUri = getAbsoluteUri(getRequestUri(), request.getUrl().getValue());
final FHIRRestInteraction operation;
if (request.getMethod().equals(HTTPVerb.GET)) {
operation = processEntryForGet(entryIndex, request, requestURL, absoluteUri, requestDescription.toString(), initialTime);
} else if (request.getMethod().equals(HTTPVerb.POST)) {
Entry validationResponseEntry = validationResponseEntries.get(entryIndex);
operation = processEntryForPost(requestEntry, validationResponseEntry,
entryIndex, requestURL, absoluteUri, requestDescription.toString(), initialTime, (bundleType == BundleType.Value.TRANSACTION));
} else if (request.getMethod().equals(HTTPVerb.PUT)) {
Entry validationResponseEntry = validationResponseEntries.get(entryIndex);
operation = processEntryForPut(requestEntry, validationResponseEntry,
entryIndex, requestURL, absoluteUri, requestDescription.toString(), initialTime, skippableUpdates, (bundleType == BundleType.Value.TRANSACTION));
} else if (request.getMethod().equals(HTTPVerb.PATCH)) {
operation = processEntryForPatch(requestEntry, requestURL, entryIndex,
requestDescription.toString(), initialTime, skippableUpdates);
} else if (request.getMethod().equals(HTTPVerb.DELETE)) {
operation = processEntryForDelete(entryIndex, requestURL, requestDescription.toString(), initialTime);
} else {
// Internal error, should not get here!
throw new IllegalStateException("Internal Server Error: reached an unexpected code location.");
}
result.add(operation);
} catch (FHIROperationException e) {
if (failFast) {
String msg = "Error while processing request bundle.";
throw new FHIRRestBundledRequestException(msg, e).withIssue(e.getIssues());
}
// otherwise, record the processing error by adding a FHIRRestOperationIssue to
// the list. When executed, this will add the error to the response bundle
Status status;
if (e instanceof FHIRSearchException) {
status = Status.BAD_REQUEST;
} else {
status = IssueTypeToHttpStatusMapper.issueListToStatus(e.getIssues());
}
Entry issue = Entry.builder()
.resource(FHIRUtil.buildOperationOutcome(e, false))
.response(Entry.Response.builder()
.status(string(Integer.toString(status.getStatusCode())))
.build())
.build();
// Record the issue so that it can be added to the response bundle later
result.add(new FHIRRestInteractionIssue(entryIndex, initialTime, status, issue));
}
} // end foreach method entry
if (log.isLoggable(Level.FINER)) {
log.finer("Finished translation for method: " + httpMethod);
}
} // end foreach method
} finally {
log.exiting(this.getClass().getName(), "processEntriesForMethod");
}
return result;
}
/**
* Processes a request entry with a request method of Patch.
*
* @param requestEntry
* the request bundle entry
* @param requestURL
* the request URL
* @param entryIndex
* the bundle entry index of the bundle entry being processed
* @param requestDescription
* a description of the request
* @param initialTime
* the time the bundle entry processing started
* @param skippableUpdate
* if true, and the resource content in the update matches the existing resource on the server, then skip the update;
* if false, then always attempt the update
* @return a FHIRRestInteraction representing the intended interaction
* @throws Exception
*/
private FHIRRestInteraction processEntryForPatch(Entry requestEntry, FHIRUrlParser requestURL, Integer entryIndex, String requestDescription,
long initialTime, boolean skippableUpdate) throws Exception {
String[] pathTokens = requestURL.getPathTokens();
String resourceType = null;
String resourceId = null;
// Process a PATCH.
if (pathTokens.length == 1) {
// A single-part url would be a conditional update: ?
// This is not yet supported for PATCH requests.
String msg = "Conditional update operation is not supported for PATCH requests.";
throw buildRestException(msg, IssueType.NOT_SUPPORTED);
} else if (pathTokens.length == 2) {
// A two-part url would be a normal patch: /.
resourceType = pathTokens[0];
resourceId = pathTokens[1];
} else {
// A url with any other pattern is an error.
String msg = "Request URL for bundled PATCH request should have path part with two tokens (/).";
throw buildRestException(msg, IssueType.INVALID);
}
checkResourceType(resourceType);
if (!requestEntry.getResource().is(Parameters.class)) {
String msg="Request resource type for PATCH request must be type 'Parameters'";
throw buildRestException(msg, IssueType.INVALID);
}
Parameters parameters = requestEntry.getResource().as(Parameters.class);
FHIRPatch patch = FHIRPathPatch.from(parameters);
// Extract the local identifier which may be used by other resources in the bundle to reference this resource
String localIdentifier = retrieveLocalIdentifier(requestEntry);
// Build the event we'll use when executing the interaction command
// - the resource gets injected later when we have it
FHIRPersistenceEvent event = new FHIRPersistenceEvent(null, helpers.buildPersistenceEventProperties(resourceType, resourceId, null, null));
// We don't perform the actual operation here, just generate the command
// we want to execute later
return new FHIRRestInteractionPatch(entryIndex, event, requestDescription, requestURL, initialTime, resourceType, resourceId, patch, null, null, skippableUpdate, localIdentifier);
}
/**
* Processes a request entry with a request method of GET.
* @param entryIndex
* the index of the entry in the request bundle
* @param entryRequest
* the request portion of the corresponding request bundle entry
* @param requestURL
* the request URL
* @param absoluteUri
* the absolute URI
* @param requestDescription
* a description of the request
* @param initialTime
* the time the bundle entry processing started
* @return a FHIRRestInteraction representing the intended interaction
* @throws Exception
*/
private FHIRRestInteraction processEntryForGet(int entryIndex, Entry.Request entryRequest, FHIRUrlParser requestURL, String absoluteUri,
String requestDescription, long initialTime) throws Exception {
final FHIRRestInteraction result;
String[] pathTokens = requestURL.getPathTokens();
MultivaluedMap queryParams = requestURL.getQueryParameters();
// Process a GET (read, vread, history, search, etc.).
// Determine the type of request from the path tokens.
if (pathTokens.length > 0 && pathTokens[pathTokens.length - 1].startsWith("$")) {
// This is a custom operation request.
// Chop off the '$' and save the name
String operationName = pathTokens[pathTokens.length - 1].substring(1);
final String GET = "GET";
final Entry validationResponseEntry = null; // No validation for GET operations
FHIROperationContext operationContext;
switch (pathTokens.length) {
case 1:
operationContext = FHIROperationContext.createSystemOperationContext(operationName);
result = new FHIRRestInteractionInvoke(entryIndex, validationResponseEntry, requestDescription, requestURL, initialTime, operationContext, GET, null, null, null, null, queryParams);
break;
case 2:
checkResourceType(pathTokens[0]);
operationContext = FHIROperationContext.createResourceTypeOperationContext(operationName);
result = new FHIRRestInteractionInvoke(entryIndex, validationResponseEntry, requestDescription, requestURL, initialTime, operationContext, GET, pathTokens[0], null, null, null, queryParams);
break;
case 3:
checkResourceType(pathTokens[0]);
operationContext = FHIROperationContext.createInstanceOperationContext(operationName);
result = new FHIRRestInteractionInvoke(entryIndex, validationResponseEntry, requestDescription, requestURL, initialTime, operationContext, GET, pathTokens[0], pathTokens[1], null, null, queryParams);
break;
default:
String msg = "Invalid URL for custom operation '" + pathTokens[pathTokens.length - 1] + "'";
throw buildRestException(msg, IssueType.NOT_FOUND);
}
} else if (pathTokens.length == 1) {
// This is a 'search' request.
if ("_search".equals(pathTokens[0])) {
result = new FHIRRestInteractionSearch(entryIndex, requestDescription, requestURL, initialTime, "Resource", null, null, queryParams, absoluteUri, null, true);
} else {
checkResourceType(pathTokens[0]);
result = new FHIRRestInteractionSearch(entryIndex, requestDescription, requestURL, initialTime, pathTokens[0], null, null, queryParams, absoluteUri, null, true);
}
} else if (pathTokens.length == 2) {
// This is a 'read' request.
checkResourceType(pathTokens[0]);
result = new FHIRRestInteractionRead(entryIndex, requestDescription, requestURL, initialTime, pathTokens[0], pathTokens[1], true, false, null, null, true);
} else if (pathTokens.length == 3) {
if ("_history".equals(pathTokens[2])) {
// This is a 'history' request.
checkResourceType(pathTokens[0]);
result = new FHIRRestInteractionHistory(entryIndex, requestDescription, requestURL, initialTime, pathTokens[0], pathTokens[1], queryParams, absoluteUri);
} else {
// This is a compartment based search
checkResourceType(pathTokens[2]);
result = new FHIRRestInteractionSearch(entryIndex, requestDescription, requestURL, initialTime, pathTokens[2], pathTokens[0], pathTokens[1], queryParams, absoluteUri, null, true);
}
} else if (pathTokens.length == 4 && pathTokens[2].equals("_history")) {
// This is a 'vread' request.
checkResourceType(pathTokens[0]);
result = new FHIRRestInteractionVRead(entryIndex, requestDescription, requestURL, initialTime, pathTokens[0], pathTokens[1], pathTokens[3], null);
} else {
String msg = "Unrecognized path in request URL: " + requestURL.getPath();
throw buildRestException(msg, IssueType.NOT_FOUND);
}
return result;
}
/**
* Processes a request entry with a request method of POST.
*
* @param requestEntry
* the request bundle entry
* @param validationResponseEntry
* the response bundle entry created during validation, possibly null
* @param entryIndex
* the bundle entry index of the bundle entry being processed
* @param requestURL
* the request URL
* @param absoluteUri
* the absolute URI
* @param requestDescription
* a description of the request
* @param initialTime
* the time the bundle entry processing started
* @param transaction
* a flag indicating whether or not this is a transaction bundle type
* @return a FHIRRestInteraction representing the intended interaction
* @throws Exception
*/
private FHIRRestInteraction processEntryForPost(Entry requestEntry, Entry validationResponseEntry,
Integer entryIndex, FHIRUrlParser requestURL, String absoluteUri, String requestDescription, long initialTime, boolean transaction)
throws Exception {
final FHIRRestInteraction result;
String[] pathTokens = requestURL.getPathTokens();
MultivaluedMap queryParams = requestURL.getQueryParameters();
Resource resource = null;
// Process a POST (create or search, or custom operation).
if (pathTokens.length > 0 && pathTokens[pathTokens.length - 1].startsWith("$")) {
// This is a custom operation request.
// Chop off the '$' and save the name.
String operationName = pathTokens[pathTokens.length - 1].substring(1);
// Retrieve the resource from the request entry.
resource = requestEntry.getResource();
FHIROperationContext operationContext;
final String POST = "POST";
switch (pathTokens.length) {
case 1:
operationContext = FHIROperationContext.createSystemOperationContext(operationName);
result = new FHIRRestInteractionInvoke(entryIndex, validationResponseEntry, requestDescription, requestURL, initialTime, operationContext, POST, null, null, null, resource, queryParams);
break;
case 2:
checkResourceType(pathTokens[0]);
operationContext = FHIROperationContext.createResourceTypeOperationContext(operationName);
result = new FHIRRestInteractionInvoke(entryIndex, validationResponseEntry, requestDescription, requestURL, initialTime, operationContext, POST, pathTokens[0], null, null, resource, queryParams);
break;
case 3:
checkResourceType(pathTokens[0]);
operationContext = FHIROperationContext.createInstanceOperationContext(operationName);
result = new FHIRRestInteractionInvoke(entryIndex, validationResponseEntry, requestDescription, requestURL, initialTime, operationContext, POST, pathTokens[0], pathTokens[1], null, resource, queryParams);
break;
default:
String msg = "Invalid URL for custom operation '" + pathTokens[pathTokens.length - 1] + "'";
throw buildRestException(msg, IssueType.NOT_FOUND);
}
} else if (pathTokens.length == 2 && "_search".equals(pathTokens[1])) {
// This is a 'search' request.
checkResourceType(pathTokens[0]);
result = new FHIRRestInteractionSearch(entryIndex, requestDescription, requestURL, initialTime, pathTokens[0], null, null, queryParams, absoluteUri, null, true);
} else if (pathTokens.length == 1) {
// This is a 'create' request.
checkResourceType(pathTokens[0]);
// Retrieve the local identifier from the request entry (if present).
String localIdentifier = retrieveLocalIdentifier(requestEntry);
// Retrieve the resource from the request entry.
resource = requestEntry.getResource();
if (resource == null) {
String msg = "BundleEntry.resource is required for bundled create requests.";
throw buildRestException(msg, IssueType.NOT_FOUND);
}
// Since 1869 we no longer use pre-generated identifiers. Identifiers are always
// assigned during the meta-processing loop.
// String resourceId = retrieveGeneratedIdentifier(localRefMap, localIdentifier);
// Build the CREATE interaction
Entry.Request request = requestEntry.getRequest();
String ifNoneExist = request.getIfNoneExist() != null
&& request.getIfNoneExist().getValue() != null
&& !request.getIfNoneExist().getValue().isEmpty() ? request.getIfNoneExist().getValue() : null;
if (log.isLoggable(Level.FINE)) {
log.fine("Creating CREATE interaction for bundle entry[" + entryIndex + "]: " + requestDescription + "; validationResponseEntry: "
+ validationResponseEntry);
}
// Create the event
FHIRPersistenceEvent event =
new FHIRPersistenceEvent(resource, helpers.buildPersistenceEventProperties(resource.getClass().getSimpleName(), null, null, null));
result = new FHIRRestInteractionCreate(entryIndex, event, validationResponseEntry, requestDescription, requestURL, initialTime, pathTokens[0], resource, ifNoneExist, localIdentifier);
} else {
String msg = "Request URL for bundled create requests should have a path with exactly one token ().";
throw buildRestException(msg, IssueType.NOT_FOUND);
}
return result;
}
/**
* Processes a request entry with a request method of PUT.
*
* @param requestEntry
* the request bundle entry
* @param validationResponseEntry
* the response bundle entry created during validation, possibly null
* @param entryIndex
* the bundle entry index of the bundle entry being processed
* @param requestURL
* the request URL
* @param absoluteUri
* the absolute URI
* @param requestDescription
* a description of the request
* @param initialTime
* the time the bundle entry processing started
* @param skippableUpdate
* if true, and the resource content in the update matches the existing resource on the server, then skip the update;
* if false, then always attempt the update
* @param transaction
* a flag indicating whether or not this is a transaction bundle type
* @return a FHIRRestInteraction representing the intended interaction
* @throws Exception
*/
private FHIRRestInteraction processEntryForPut(Entry requestEntry, Entry validationResponseEntry,
Integer entryIndex, FHIRUrlParser requestURL, String absoluteUri, String requestDescription,
long initialTime, boolean skippableUpdate, boolean transaction) throws Exception {
final FHIRRestInteraction result;
String[] pathTokens = requestURL.getPathTokens();
final String type;
final String id;
// Process a PUT (update).
if (pathTokens.length == 1) {
// A single-part url would be a conditional update: ?
type = pathTokens[0];
id = null;
if (requestURL.getQuery() == null || requestURL.getQuery().isEmpty()) {
String msg = "A search query string is required for a conditional update operation.";
throw buildRestException(msg, IssueType.INVALID);
}
} else if (pathTokens.length == 2) {
// A two-part url would be a normal update: /.
type = pathTokens[0];
id = pathTokens[1];
} else {
// A url with any other pattern is an error.
String msg = "Request URL for bundled PUT request should have path part with either one or two tokens ( or /).";
throw buildRestException(msg, IssueType.INVALID);
}
checkResourceType(type);
// Retrieve the resource from the request entry.
Resource resource = requestEntry.getResource();
// Build the 'update' interaction.
String ifMatchBundleValue = null;
if (requestEntry.getRequest().getIfMatch() != null) {
ifMatchBundleValue = requestEntry.getRequest().getIfMatch().getValue();
}
// Conditional create-on-update
Integer ifNoneMatch = null;
if (requestEntry.getRequest().getIfNoneMatch() != null) {
String ifNoneMatchValue = requestEntry.getRequest().getIfNoneMatch().getValue();
if ("*".equals(ifNoneMatchValue)) {
ifNoneMatch = Integer.valueOf(0);
}
}
// Extract the local identifier which may be used by other resources in the bundle to reference this resource
String localIdentifier = retrieveLocalIdentifier(requestEntry);
// Build the UPDATE interaction command
if (log.isLoggable(Level.FINE)) {
log.fine("Creating UPDATE interaction for bundle entry[" + entryIndex + "]: " + requestDescription + "; validationResponseEntry: "
+ validationResponseEntry);
}
// Create the event we'll use for this resource interaction
FHIRPersistenceEvent event = new FHIRPersistenceEvent(resource, helpers.buildPersistenceEventProperties(type, id, null, null));
result = new FHIRRestInteractionUpdate(entryIndex, event, validationResponseEntry, requestDescription, requestURL, initialTime,
type, id, resource, ifMatchBundleValue, requestURL.getQuery(), skippableUpdate, localIdentifier, ifNoneMatch);
return result;
}
/**
* Processes a request entry with a request method of DELETE.
* @param entryIndex
* the index of the entry in the request bundle
* @param requestURL
* the request URL
* @param requestDescription
* a description of the request
* @param initialTime
* the time the bundle entry processing started
* @return a FHIRRestInteraction representing the intended interaction
* @throws Exception
*/
private FHIRRestInteraction processEntryForDelete(int entryIndex, FHIRUrlParser requestURL, String requestDescription, long initialTime) throws Exception {
final FHIRRestInteraction result;
String[] pathTokens = requestURL.getPathTokens();
String type = null;
String id = null;
// Process a DELETE.
if (pathTokens.length == 1) {
// A single-part url would be a conditional delete: ?
type = pathTokens[0];
if (requestURL.getQuery() == null || requestURL.getQuery().isEmpty()) {
String msg = "A search query string is required for a conditional delete operation.";
throw buildRestException(msg, IssueType.INVALID);
}
} else if (pathTokens.length == 2) {
type = pathTokens[0];
id = pathTokens[1];
} else {
String msg = "Request URL for bundled DELETE request should have path part with one or two tokens ( or /).";
throw buildRestException(msg, IssueType.INVALID);
}
checkResourceType(type);
// Perform the 'delete' operation.
if (log.isLoggable(Level.FINE)) {
log.fine("Creating DELETE interaction for bundle entry[" + entryIndex + "]: " + requestDescription);
}
result = new FHIRRestInteractionDelete(entryIndex, requestDescription, requestURL, initialTime, type, id, requestURL.getQuery());
return result;
}
/**
* Check that the resource type is a valid type
* @param type the resource type name
* @throws FHIROperationException
*/
public void checkResourceType(String type) throws FHIROperationException {
if (!ModelSupport.isResourceType(type)) {
throw buildUnsupportedResourceTypeException(type);
}
if (!ModelSupport.isConcreteResourceType(type)) {
log.warning("Use of abstract resource types like '" + type + "' in FHIR URLs is deprecated and will be removed in a future release");
}
}
/**
* This function sorts the request entries in the specified bundle, based on the path part of the entry's 'url'
* field.
*
* @param bundle
* the bundle containing the request entries to be sorted.
* @return an array of Integer which provides the "sorted" ordering of request entry index values.
*/
private void sortBundleRequestEntries(Bundle bundle, List indices) {
// Sort the list of indices based on the contents of their entries in the bundle.
Collections.sort(indices, new BundleEntryComparator(bundle.getEntry()));
}
private static class BundleEntryComparator implements Comparator {
private List entries;
public BundleEntryComparator(List entries) {
this.entries = entries;
}
@Override
public int compare(Integer indexA, Integer indexB) {
Entry a = entries.get(indexA);
Entry b = entries.get(indexB);
String pathA = getUrlPath(a);
String pathB = getUrlPath(b);
if (log.isLoggable(Level.FINE)) {
log.fine("Comparing request entry URL paths: " + pathA + ", " + pathB);
}
if (pathA != null && pathB != null) {
return pathA.compareTo(pathB);
} else if (pathA != null) {
return 1;
} else if (pathB != null) {
return -1;
}
return 0;
}
}
/**
* Returns the specified BundleEntry's path component of the 'url' field.
*
* @param entry
* the bundle entry
* @return the bundle entry's 'url' field's path component
*/
private static String getUrlPath(Entry entry) {
String path = null;
Entry.Request request = entry.getRequest();
if (request != null) {
if (request.getUrl() != null && request.getUrl().getValue() != null) {
FHIRUrlParser requestURL = new FHIRUrlParser(request.getUrl().getValue());
path = requestURL.getPath();
}
}
return path;
}
/**
* This method will retrieve the local identifier associated with the specified bundle request entry, or return null
* if the fullUrl field is not specified or doesn't contain a local identifier.
*
* @param requestEntry
* the bundle request entry
* @return the local identifier
*/
private String retrieveLocalIdentifier(Entry requestEntry) {
String localIdentifier = null;
if (requestEntry.getFullUrl() != null) {
String fullUrl = requestEntry.getFullUrl().getValue();
if (fullUrl != null && fullUrl.startsWith(LOCAL_REF_PREFIX)) {
localIdentifier = fullUrl;
if (log.isLoggable(Level.FINER)) {
log.finer("Request entry contains local identifier: " + localIdentifier);
}
}
}
return localIdentifier;
}
/**
* This function will build an absolute URI from the specified base URI and relative URI.
*
* @param baseUri
* the base URI to be used; this will be of the form ://:/
* @param relativeUri
* the path and query parts
* @return the full URI value as a String
*/
private String getAbsoluteUri(String baseUri, String relativeUri) {
StringBuilder fullUri = new StringBuilder();
fullUri.append(baseUri);
if (!baseUri.endsWith("/")) {
fullUri.append("/");
}
fullUri.append((relativeUri.startsWith("/") ? relativeUri.substring(1) : relativeUri));
return fullUri.toString();
}
/**
* Get the original request URI from either the HttpServletRequest or a configured Header (in case of re-writing proxies).
*
* When the 'fhirServer/core/originalRequestUriHeaderName' property is empty, this method returns the equivalent of
* uriInfo.getRequestUri().toString(), except that uriInfo.getRequestUri() will throw an IllegalArgumentException
* when the query string portion contains a vertical bar | character. The vertical bar is one known case of a special character
* causing the exception. There could be others.
*
* @return String The complete request URI
* @throws Exception if an error occurs while reading the config
*/
private String getRequestUri() throws Exception {
return FHIRRequestContext.get().getOriginalRequestUri();
}
}