algorithms.tnm.2.0.schemas.brain.json Maven / Gradle / Ivy

{
  "id" : "brain",
  "algorithm" : "tnm",
  "version" : "2.0",
  "name" : "Brain",
  "title" : "Brain and Cerebral Meninges",
  "notes" : "C700  Cerebral meninges\nC710  Cerebrum\nC711  Frontal lobe\nC712  Temporal lobe\nC713  Parietal lobe\nC714  Occipital lobe\nC715  Ventricle, NOS\nC716  Cerebellum, NOS\nC717  Brain stem\nC718  Overlapping lesion of brain\nC719  Brain, NOS\n\n**Note 1:** TNM opted not to recommend a TNM scheme in 7th edition.\n\n**Note 2:** TNM is not defined for this schema. If directly assigning Summary Stage 2000 (SS2000), use the *Brain and Cerebral Meninges* chapter on page 272 of the [SS2000 on-line manual](https://seer.cancer.gov/tools/ssm/ssm2000/SSSM2000-122012.pdf#page=272).",
  "schema_selection_table" : "schema_selection_brain",
  "inputs" : [ {
    "key" : "year_dx",
    "name" : "Year of Diagnosis",
    "naaccr_item" : 390,
    "naaccr_xml_id" : "dateOfDiagnosis",
    "table" : "year_dx_validation",
    "used_for_staging" : false
  }, {
    "key" : "site",
    "name" : "Primary Site",
    "naaccr_item" : 400,
    "naaccr_xml_id" : "primarySite",
    "table" : "primary_site",
    "used_for_staging" : true
  }, {
    "key" : "hist",
    "name" : "Histology",
    "naaccr_item" : 522,
    "naaccr_xml_id" : "histologicTypeIcdO3",
    "table" : "histology",
    "used_for_staging" : true
  }, {
    "key" : "ssf1",
    "name" : "World Health Organization (WHO) Grade Classification",
    "naaccr_item" : 2880,
    "naaccr_xml_id" : "csSiteSpecificFactor1",
    "default" : "999",
    "table" : "ssf1_jpo",
    "used_for_staging" : false,
    "metadata" : [ {
      "name" : "COC_REQUIRED"
    }, {
      "name" : "NPCR_REQUIRED"
    }, {
      "name" : "CCCR_REQUIRED"
    }, {
      "name" : "SEER_REQUIRED"
    } ]
  }, {
    "key" : "ssf2",
    "name" : "Ki-67/MIB-1 Labeling Index (LI): Brain",
    "naaccr_item" : 2890,
    "naaccr_xml_id" : "csSiteSpecificFactor2",
    "default" : "988",
    "table" : "ssf2_kpl",
    "used_for_staging" : false
  }, {
    "key" : "ssf3",
    "name" : "Functional Neurologic Status - Karnofsky Performance Scale (KPS)",
    "naaccr_item" : 2900,
    "naaccr_xml_id" : "csSiteSpecificFactor3",
    "default" : "988",
    "table" : "ssf3_lpm",
    "used_for_staging" : false
  }, {
    "key" : "ssf4",
    "name" : "Methylation of O6-Methylguanine-Methyltransferase (MGMT)",
    "naaccr_item" : 2910,
    "naaccr_xml_id" : "csSiteSpecificFactor4",
    "default" : "988",
    "table" : "ssf4_mpn",
    "used_for_staging" : false,
    "metadata" : [ {
      "name" : "COC_REQUIRED"
    }, {
      "name" : "CCCR_REQUIRED"
    } ]
  }, {
    "key" : "ssf5",
    "name" : "Chromosome 1p: Loss of Heterozygosity (LOH)",
    "naaccr_item" : 2920,
    "naaccr_xml_id" : "csSiteSpecificFactor5",
    "default" : "988",
    "table" : "ssf5_nph",
    "used_for_staging" : false,
    "metadata" : [ {
      "name" : "COC_REQUIRED"
    }, {
      "name" : "CCCR_REQUIRED"
    } ]
  }, {
    "key" : "ssf6",
    "name" : "Chromosome 19q: Loss of Heterozygosity (LOH)",
    "naaccr_item" : 2930,
    "naaccr_xml_id" : "csSiteSpecificFactor6",
    "default" : "988",
    "table" : "ssf6_opf",
    "used_for_staging" : false,
    "metadata" : [ {
      "name" : "COC_REQUIRED"
    }, {
      "name" : "CCCR_REQUIRED"
    } ]
  }, {
    "key" : "ssf7",
    "name" : "Surgical Resection",
    "naaccr_item" : 2861,
    "naaccr_xml_id" : "csSiteSpecificFactor7",
    "default" : "988",
    "table" : "ssf7_sqk",
    "used_for_staging" : false
  }, {
    "key" : "ssf8",
    "name" : "Unifocal vs Multifocal Tumor",
    "naaccr_item" : 2862,
    "naaccr_xml_id" : "csSiteSpecificFactor8",
    "default" : "988",
    "table" : "ssf8_sql",
    "used_for_staging" : false
  } ],
  "outputs" : [ {
    "key" : "derived_version",
    "name" : "Derived Version",
    "default" : "{{ctx_alg_version}}"
  }, {
    "key" : "clin_stage_group",
    "name" : "Derived SEER Clin Stage Group",
    "naaccr_item" : 3610,
    "naaccr_xml_id" : "derivedSeerClinStgGrp",
    "default" : "88"
  }, {
    "key" : "path_stage_group",
    "name" : "Derived SEER Path Stage Group",
    "naaccr_item" : 3605,
    "naaccr_xml_id" : "derivedSeerPathStgGrp",
    "default" : "88"
  }, {
    "key" : "combined_stage_group",
    "name" : "Derived SEER Combined Stage Group",
    "naaccr_item" : 3614,
    "naaccr_xml_id" : "derivedSeerCmbStgGrp",
    "default" : "88"
  }, {
    "key" : "combined_t",
    "name" : "Derived SEER Combined T",
    "naaccr_item" : 3616,
    "naaccr_xml_id" : "derivedSeerCombinedT",
    "default" : "88"
  }, {
    "key" : "combined_n",
    "name" : "Derived SEER Combined N",
    "naaccr_item" : 3618,
    "naaccr_xml_id" : "derivedSeerCombinedN",
    "default" : "88"
  }, {
    "key" : "combined_m",
    "name" : "Derived SEER Combined M",
    "naaccr_item" : 3620,
    "naaccr_xml_id" : "derivedSeerCombinedM",
    "default" : "88"
  }, {
    "key" : "source_t",
    "name" : "Derived SEER Combined T Source",
    "naaccr_item" : 3622,
    "naaccr_xml_id" : "derivedSeerCmbTSrc"
  }, {
    "key" : "source_n",
    "name" : "Derived SEER Combined N Source",
    "naaccr_item" : 3624,
    "naaccr_xml_id" : "derivedSeerCmbNSrc"
  }, {
    "key" : "source_m",
    "name" : "Derived SEER Combined M Source",
    "naaccr_item" : 3626,
    "naaccr_xml_id" : "derivedSeerCmbMSrc"
  } ],
  "involved_tables" : [ "primary_site", "ssf6_opf", "ssf4_mpn", "histology", "ssf1_jpo", "ssf8_sql", "year_dx_validation", "ssf7_sqk", "ssf3_lpm", "ssf2_kpl", "schema_selection_brain", "ssf5_nph" ],
  "last_modified" : "2020-06-30T19:47:42.990Z",
  "on_invalid_input" : "FAIL_WHEN_USED_FOR_STAGING"
}