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algorithms.tnm.1.6.schemas.anus.json Maven / Gradle / Ivy
{
"id": "anus",
"algorithm": "tnm",
"version": "1.6",
"name": "Anus",
"title": "Anus, Anal Canal, and Other Parts of Rectum",
"notes": "C210 Anus, NOS (excluding skin of anus and perianal skin C445)\nC211 Anal canal\nC212 Cloacogenic zone\nC218 Overlapping lesion of rectum, anus and anal canal\n\n**Note 1:** This schema is based on the UICC chapter *Anal Canal,* pages 106-109.\n* Primary sites C210 and C218 are not listed in this chapter of the UICC manual; however, they are included in this schema and TNM staged if appropriate histology criteria are met\n* Skin of anus is coded separately (C445)\n\n**Note 2:** In addition to directly assigning TNM, Summary Stage 2000 (SS2000) must be captured. If directly assigning SS2000, use the *Anus and Anal Canal* chapter on page 104 of the [SS2000 on-line manual](http://seer.cancer.gov/tools/ssm/SSSM2000-122012.pdf#page=104).",
"schema_selection_table": "schema_selection_anus",
"inputs": [
{
"key": "year_dx",
"name": "Year of Diagnosis",
"naaccr_item": 390,
"table": "year_dx_validation",
"used_for_staging": false
},
{
"key": "site",
"name": "Primary Site",
"naaccr_item": 400,
"table": "primary_site",
"used_for_staging": true
},
{
"key": "hist",
"name": "Histology",
"naaccr_item": 522,
"table": "histology",
"used_for_staging": true
},
{
"key": "behavior",
"name": "Behavior",
"naaccr_item": 523,
"table": "behavior",
"used_for_staging": true
},
{
"key": "systemic_surg_seq",
"name": "RX Summ Systemic/Surgery Sequence",
"naaccr_item": 1639,
"table": "systemic_surg_seq",
"used_for_staging": true
},
{
"key": "radiation_surg_seq",
"name": "RX Summ Surgery/Radiation Sequence",
"naaccr_item": 1380,
"table": "radiation_surg_seq",
"used_for_staging": true
},
{
"key": "nodes_pos",
"name": "Regional Nodes Positive",
"naaccr_item": 820,
"table": "nodes_pos_fpa",
"used_for_staging": true
},
{
"key": "clin_t",
"name": "Clinical T",
"naaccr_item": 940,
"table": "anus_t_35615",
"used_for_staging": true
},
{
"key": "clin_n",
"name": "Clinical N",
"naaccr_item": 950,
"table": "clin_n_dab",
"used_for_staging": true
},
{
"key": "clin_m",
"name": "Clinical M",
"naaccr_item": 960,
"table": "clin_m_anus_46174",
"used_for_staging": true
},
{
"key": "path_t",
"name": "Pathologic T",
"naaccr_item": 880,
"table": "path_t_anus_61291",
"used_for_staging": true
},
{
"key": "path_n",
"name": "Pathologic N",
"naaccr_item": 890,
"table": "path_n_dab",
"used_for_staging": true
},
{
"key": "path_m",
"name": "Pathologic M",
"naaccr_item": 900,
"table": "path_m_anus_33946",
"used_for_staging": true
},
{
"key": "ssf1",
"name": "Human Papilloma Virus (HPV) Status",
"naaccr_item": 2880,
"default": "988",
"table": "ssf1_jce",
"used_for_staging": false
},
{
"key": "clin_stage_group_direct",
"name": "TNM Clin Stage Group",
"naaccr_item": 970,
"default": "99",
"table": "stage_group_c_42709",
"used_for_staging": true,
"metadata": [
"NPCR_REQUIRED",
"COC_REQUIRED"
]
},
{
"key": "path_stage_group_direct",
"name": "TNM Path Stage Group",
"naaccr_item": 910,
"default": "99",
"table": "stage_group_p_92581",
"used_for_staging": true,
"metadata": [
"NPCR_REQUIRED",
"COC_REQUIRED"
]
}
],
"outputs": [
{
"key": "derived_version",
"name": "Derived Version",
"default": "{{ctx_alg_version}}"
},
{
"key": "clin_stage_group",
"name": "Derived SEER Clin Stage Group",
"naaccr_item": 3610,
"default": "88"
},
{
"key": "path_stage_group",
"name": "Derived SEER Path Stage Group",
"naaccr_item": 3605,
"default": "88"
},
{
"key": "combined_stage_group",
"name": "Derived SEER Combined Stage Group",
"naaccr_item": 3614,
"default": "88"
},
{
"key": "combined_t",
"name": "Derived SEER Combined T",
"naaccr_item": 3616,
"default": "88"
},
{
"key": "combined_n",
"name": "Derived SEER Combined N",
"naaccr_item": 3618,
"default": "88"
},
{
"key": "combined_m",
"name": "Derived SEER Combined M",
"naaccr_item": 3620,
"default": "88"
},
{
"key": "source_t",
"name": "Derived SEER Combined T Source",
"naaccr_item": 3622
},
{
"key": "source_n",
"name": "Derived SEER Combined N Source",
"naaccr_item": 3624
},
{
"key": "source_m",
"name": "Derived SEER Combined M Source",
"naaccr_item": 3626
}
],
"mappings": [
{
"id": "tnm7_stage",
"name": "TNM 7 Stage",
"inclusion_tables": [
{
"id": "tnm7_inclusions_tpe",
"inputs": [
"hist"
]
}
],
"initial_context": [
{
"key": "clin_stage_group",
"value": "90"
},
{
"key": "path_stage_group",
"value": "90"
}
],
"tables": [
{
"id": "parse_t_2177",
"input_mapping": [
{
"from": "clin_t",
"to": "t"
}
],
"output_mapping": [
{
"from": "root_t",
"to": "tmp_clin_t"
},
{
"from": "t_prefix",
"to": "clin_t_prefix"
}
],
"inputs": [
"clin_t"
],
"outputs": [
"clin_t_prefix",
"tmp_clin_t"
]
},
{
"id": "parse_n_67182",
"input_mapping": [
{
"from": "clin_n",
"to": "n"
}
],
"output_mapping": [
{
"from": "root_n",
"to": "tmp_clin_n"
},
{
"from": "n_prefix",
"to": "clin_n_prefix"
}
],
"inputs": [
"clin_n"
],
"outputs": [
"clin_n_prefix",
"tmp_clin_n"
]
},
{
"id": "parse_m_47057",
"input_mapping": [
{
"from": "clin_m",
"to": "m"
}
],
"output_mapping": [
{
"from": "m_prefix",
"to": "clin_m_prefix"
},
{
"from": "root_m",
"to": "tmp_clin_m"
}
],
"inputs": [
"clin_m"
],
"outputs": [
"tmp_clin_m",
"clin_m_prefix"
]
},
{
"id": "parse_t_2177",
"input_mapping": [
{
"from": "path_t",
"to": "t"
}
],
"output_mapping": [
{
"from": "root_t",
"to": "tmp_path_t"
},
{
"from": "t_prefix",
"to": "path_t_prefix"
}
],
"inputs": [
"path_t"
],
"outputs": [
"tmp_path_t",
"path_t_prefix"
]
},
{
"id": "parse_n_67182",
"input_mapping": [
{
"from": "path_n",
"to": "n"
}
],
"output_mapping": [
{
"from": "root_n",
"to": "tmp_path_n"
},
{
"from": "n_prefix",
"to": "path_n_prefix"
}
],
"inputs": [
"path_n"
],
"outputs": [
"tmp_path_n",
"path_n_prefix"
]
},
{
"id": "parse_m_47057",
"input_mapping": [
{
"from": "path_m",
"to": "m"
}
],
"output_mapping": [
{
"from": "root_m",
"to": "tmp_path_m"
},
{
"from": "m_prefix",
"to": "path_m_prefix"
}
],
"inputs": [
"path_m"
],
"outputs": [
"tmp_path_m",
"path_m_prefix"
]
},
{
"id": "determine_default_t",
"input_mapping": [
{
"from": "tmp_path_t",
"to": "path_t_in"
},
{
"from": "tmp_clin_t",
"to": "clin_t_in"
}
],
"output_mapping": [
{
"from": "source_t_out",
"to": "source_t"
},
{
"from": "path_t_out",
"to": "tmp_path_t"
},
{
"from": "clin_t_out",
"to": "tmp_clin_t"
},
{
"from": "combined_t_out",
"to": "tmp_combined_t"
}
],
"inputs": [
"tmp_path_t",
"tmp_clin_t"
],
"outputs": [
"source_t",
"tmp_path_t",
"tmp_clin_t",
"tmp_combined_t"
]
},
{
"id": "determine_default_n",
"input_mapping": [
{
"from": "tmp_path_n",
"to": "path_n_in"
},
{
"from": "tmp_clin_n",
"to": "clin_n_in"
}
],
"output_mapping": [
{
"from": "path_n_out",
"to": "tmp_path_n"
},
{
"from": "source_n_out",
"to": "source_n"
},
{
"from": "combined_n_out",
"to": "tmp_combined_n"
},
{
"from": "clin_n_out",
"to": "tmp_clin_n"
}
],
"inputs": [
"tmp_clin_n",
"tmp_path_n"
],
"outputs": [
"tmp_combined_n",
"tmp_clin_n",
"tmp_path_n",
"source_n"
]
},
{
"id": "determine_default_m",
"input_mapping": [
{
"from": "tmp_path_m",
"to": "path_m_in"
},
{
"from": "tmp_clin_m",
"to": "clin_m_in"
}
],
"output_mapping": [
{
"from": "source_m_out",
"to": "source_m"
},
{
"from": "combined_m_out",
"to": "tmp_combined_m"
},
{
"from": "clin_m_out",
"to": "tmp_clin_m"
},
{
"from": "path_m_out",
"to": "tmp_path_m"
}
],
"inputs": [
"tmp_path_m",
"tmp_clin_m"
],
"outputs": [
"tmp_path_m",
"tmp_combined_m",
"tmp_clin_m",
"source_m"
]
},
{
"id": "tnm7_stage_uab",
"input_mapping": [
{
"from": "tmp_clin_n",
"to": "n"
},
{
"from": "tmp_clin_m",
"to": "m"
},
{
"from": "tmp_clin_t",
"to": "t"
}
],
"output_mapping": [
{
"from": "stage",
"to": "clin_stage_group"
}
],
"inputs": [
"tmp_clin_n",
"tmp_clin_m",
"tmp_clin_t"
],
"outputs": [
"clin_stage_group"
]
},
{
"id": "tnm7_path_stage_uab",
"input_mapping": [
{
"from": "tmp_path_m",
"to": "m"
},
{
"from": "tmp_path_n",
"to": "n"
},
{
"from": "tmp_path_t",
"to": "t"
}
],
"output_mapping": [
{
"from": "stage",
"to": "path_stage_group"
}
],
"inputs": [
"tmp_path_m",
"tmp_path_n",
"tmp_path_t"
],
"outputs": [
"path_stage_group"
]
},
{
"id": "adjustments_for_no_clin_or_no_path_26261",
"output_mapping": [
{
"from": "source_t_out",
"to": "source_t"
},
{
"from": "source_m_out",
"to": "source_m"
},
{
"from": "combined_m_out",
"to": "tmp_combined_m"
},
{
"from": "source_n_out",
"to": "source_n"
},
{
"from": "combined_t_out",
"to": "tmp_combined_t"
},
{
"from": "combined_n_out",
"to": "tmp_combined_n"
}
],
"inputs": [
"tmp_path_t",
"clin_n",
"clin_m",
"clin_t",
"path_t",
"tmp_path_m",
"tmp_clin_n",
"tmp_clin_m",
"clin_stage_group_direct",
"tmp_path_n",
"path_m",
"tmp_clin_t",
"path_stage_group_direct",
"path_n"
],
"outputs": [
"tmp_combined_n",
"tmp_combined_m",
"source_t",
"clin_stage_group",
"path_stage_group",
"source_n",
"tmp_combined_t",
"source_m"
]
}
]
},
{
"id": "combined_stage",
"name": "Combined Stage",
"inclusion_tables": [
{
"id": "tnm7_inclusions_tpe",
"inputs": [
"hist"
]
}
],
"initial_context": [
{
"key": "combined_m",
"value": "90"
},
{
"key": "combined_n",
"value": "90"
},
{
"key": "combined_stage_group",
"value": "90"
},
{
"key": "combined_t",
"value": "90"
}
],
"tables": [
{
"id": "stop_if_no_clin_and_no_path_24035",
"inputs": [
"clin_t",
"path_t",
"clin_stage_group_direct",
"path_m",
"clin_n",
"path_stage_group_direct",
"clin_m",
"path_n"
],
"outputs": [
"combined_m",
"combined_n",
"source_t",
"tmp_continue",
"combined_t",
"combined_stage_group",
"source_n",
"source_m"
]
},
{
"id": "combined_t",
"input_mapping": [
{
"from": "tmp_path_t",
"to": "path_t_in"
},
{
"from": "tmp_combined_t",
"to": "combined_t_in"
},
{
"from": "tmp_clin_t",
"to": "clin_t_in"
}
],
"output_mapping": [
{
"from": "source_t_out",
"to": "source_t"
},
{
"from": "combined_t_out",
"to": "tmp_combined_t"
}
],
"inputs": [
"radiation_surg_seq",
"tmp_path_t",
"tmp_clin_t",
"behavior",
"systemic_surg_seq",
"tmp_combined_t"
],
"outputs": [
"source_t",
"tmp_combined_t"
]
},
{
"id": "combined_n_for_tis_cancers_4947",
"input_mapping": [
{
"from": "tmp_path_n",
"to": "path_n_in"
},
{
"from": "tmp_combined_n",
"to": "combined_n_in"
},
{
"from": "tmp_clin_n",
"to": "clin_n_in"
}
],
"output_mapping": [
{
"from": "source_n_out",
"to": "source_n"
},
{
"from": "combined_n_out",
"to": "tmp_combined_n"
}
],
"inputs": [
"nodes_pos",
"tmp_combined_n",
"tmp_clin_n",
"radiation_surg_seq",
"tmp_path_n",
"systemic_surg_seq"
],
"outputs": [
"tmp_combined_n",
"source_n"
]
},
{
"id": "combined_m",
"input_mapping": [
{
"from": "tmp_combined_m",
"to": "combined_m_in"
},
{
"from": "tmp_path_m",
"to": "path_m_in"
},
{
"from": "tmp_clin_m",
"to": "clin_m_in"
}
],
"output_mapping": [
{
"from": "source_m_out",
"to": "source_m"
},
{
"from": "combined_m_out",
"to": "tmp_combined_m"
}
],
"inputs": [
"tmp_path_m",
"tmp_combined_m",
"tmp_clin_m"
],
"outputs": [
"tmp_combined_m",
"tmp_source_m",
"source_m"
]
},
{
"id": "determine_combined_prefix_91402",
"input_mapping": [
{
"from": "clin_t_prefix",
"to": "clin_prefix"
},
{
"from": "source_t",
"to": "cmb_source"
},
{
"from": "path_t_prefix",
"to": "path_prefix"
}
],
"output_mapping": [
{
"from": "cmb_prefix",
"to": "cmb_t_prefix"
}
],
"inputs": [
"clin_t_prefix",
"source_t",
"path_t_prefix"
],
"outputs": [
"cmb_t_prefix"
]
},
{
"id": "determine_combined_prefix_91402",
"input_mapping": [
{
"from": "path_n_prefix",
"to": "path_prefix"
},
{
"from": "source_n",
"to": "cmb_source"
},
{
"from": "clin_n_prefix",
"to": "clin_prefix"
}
],
"output_mapping": [
{
"from": "cmb_prefix",
"to": "cmb_n_prefix"
}
],
"inputs": [
"clin_n_prefix",
"path_n_prefix",
"source_n"
],
"outputs": [
"cmb_n_prefix"
]
},
{
"id": "determine_combined_prefix_91402",
"input_mapping": [
{
"from": "tmp_source_m",
"to": "cmb_source"
},
{
"from": "path_m_prefix",
"to": "path_prefix"
},
{
"from": "clin_m_prefix",
"to": "clin_prefix"
}
],
"output_mapping": [
{
"from": "cmb_prefix",
"to": "cmb_m_prefix"
}
],
"inputs": [
"clin_m_prefix",
"tmp_source_m",
"path_m_prefix"
],
"outputs": [
"cmb_m_prefix"
]
},
{
"id": "concatenate_t_51262",
"input_mapping": [
{
"from": "tmp_combined_t",
"to": "root_t"
},
{
"from": "cmb_t_prefix",
"to": "t_prefix"
}
],
"output_mapping": [
{
"from": "t",
"to": "combined_t"
}
],
"inputs": [
"cmb_t_prefix",
"tmp_combined_t"
],
"outputs": [
"combined_t"
]
},
{
"id": "concatenate_n_43246",
"input_mapping": [
{
"from": "cmb_n_prefix",
"to": "n_prefix"
},
{
"from": "tmp_combined_n",
"to": "root_n"
}
],
"output_mapping": [
{
"from": "n",
"to": "combined_n"
}
],
"inputs": [
"cmb_n_prefix",
"tmp_combined_n"
],
"outputs": [
"combined_n"
]
},
{
"id": "concatenate_m_40642",
"input_mapping": [
{
"from": "tmp_combined_m",
"to": "root_m"
},
{
"from": "cmb_m_prefix",
"to": "m_prefix"
}
],
"output_mapping": [
{
"from": "m",
"to": "combined_m"
}
],
"inputs": [
"cmb_m_prefix",
"tmp_combined_m"
],
"outputs": [
"combined_m"
]
},
{
"id": "tnm7_path_stage_uab",
"input_mapping": [
{
"from": "tmp_combined_n",
"to": "n"
},
{
"from": "tmp_combined_m",
"to": "m"
},
{
"from": "tmp_combined_t",
"to": "t"
}
],
"output_mapping": [
{
"from": "stage",
"to": "combined_stage_group"
}
],
"inputs": [
"tmp_combined_n",
"tmp_combined_m",
"tmp_combined_t"
],
"outputs": [
"combined_stage_group"
]
}
]
}
],
"involved_tables": [
"path_m_anus_33946",
"determine_default_t",
"radiation_surg_seq",
"determine_default_m",
"stage_group_p_92581",
"nodes_pos_fpa",
"parse_t_2177",
"concatenate_n_43246",
"parse_n_67182",
"determine_default_n",
"stage_group_c_42709",
"histology",
"concatenate_m_40642",
"path_t_anus_61291",
"behavior",
"tnm7_inclusions_tpe",
"concatenate_t_51262",
"adjustments_for_no_clin_or_no_path_26261",
"tnm7_path_stage_uab",
"clin_n_dab",
"determine_combined_prefix_91402",
"stop_if_no_clin_and_no_path_24035",
"systemic_surg_seq",
"path_n_dab",
"combined_n_for_tis_cancers_4947",
"tnm7_stage_uab",
"anus_t_35615",
"parse_m_47057",
"schema_selection_anus",
"clin_m_anus_46174",
"primary_site",
"combined_m",
"year_dx_validation",
"ssf1_jce",
"combined_t"
],
"on_invalid_input": "FAIL_WHEN_USED_FOR_STAGING",
"last_modified": "2018-02-05T18:40:34.923Z"
}
