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algorithms.eod_public.1.0.schemas.cervix.json Maven / Gradle / Ivy
{
"id" : "cervix",
"algorithm" : "eod_public",
"version" : "1.0",
"name" : "Cervix",
"title" : "Cervix Uteri",
"notes" : "C530 Endocervix\nC531 Exocervix\nC538 Overlapping lesion of cervix\nC539 Cervix uteri\n\n**Note:** The following sources were used in the development of this schema\n* SEER Extent of Disease 1988: Codes and Coding Instructions (3rd Edition, 1998) (https://seer.cancer.gov/archive/manuals/EOD10Dig.3rd.pdf)\n* SEER Summary Staging Manual-2000: Codes and Coding Instructions (https://seer.cancer.gov/tools/ssm/)\n* Collaborative Stage Data Collection System, version 02.05: https://cancerstaging.org/cstage/Pages/default.aspx \n* Chapter 52 *Cervix Uteri*, in the AJCC Cancer Staging Manual, Eighth Edition (2017) published by Springer International Publishing. Used with permission of the American College of Surgeons, Chicago, Illinois.",
"schema_selection_table" : "schema_selection_cervix",
"inputs" : [ {
"key" : "year_dx",
"name" : "Year of Diagnosis",
"naaccr_item" : 390,
"table" : "year_dx_validation",
"used_for_staging" : false
}, {
"key" : "site",
"name" : "Primary Site",
"naaccr_item" : 400,
"table" : "primary_site",
"used_for_staging" : true
}, {
"key" : "hist",
"name" : "Histology",
"naaccr_item" : 522,
"table" : "histology",
"used_for_staging" : true
}, {
"key" : "behavior",
"name" : "Behavior",
"naaccr_item" : 523,
"table" : "behavior",
"used_for_staging" : true
}, {
"key" : "size_clin",
"name" : "Tumor Size Clinical",
"naaccr_item" : 752,
"table" : "tumor_size_clinical_60979",
"used_for_staging" : false
}, {
"key" : "size_path",
"name" : "Tumor Size Pathological",
"naaccr_item" : 754,
"table" : "tumor_size_pathological_25597",
"used_for_staging" : false
}, {
"key" : "size_summary",
"name" : "Tumor Size Summary",
"naaccr_item" : 756,
"default" : "999",
"table" : "tumor_size_summary_63115",
"used_for_staging" : true
}, {
"key" : "nodes_pos",
"name" : "Regional Nodes Positive",
"naaccr_item" : 820,
"default" : "99",
"table" : "nodes_pos_fpa",
"used_for_staging" : false
}, {
"key" : "nodes_exam",
"name" : "Regional Nodes Examined",
"naaccr_item" : 830,
"default" : "99",
"table" : "nodes_exam_76029",
"used_for_staging" : false
}, {
"key" : "radiation_surg_seq",
"name" : "RX Summ Surgery/Radiation Sequence",
"naaccr_item" : 1380,
"table" : "radiation_surg_seq",
"used_for_staging" : false
}, {
"key" : "systemic_surg_seq",
"name" : "RX Summ Systemic/Surgery Sequence",
"naaccr_item" : 1639,
"table" : "systemic_surg_seq",
"used_for_staging" : false
}, {
"key" : "eod_primary_tumor",
"name" : "EOD Primary Tumor",
"naaccr_item" : 772,
"default" : "999",
"table" : "extension_bbk",
"used_for_staging" : true
}, {
"key" : "eod_regional_nodes",
"name" : "EOD Regional Nodes",
"naaccr_item" : 774,
"default" : "999",
"table" : "nodes_dbc",
"used_for_staging" : true
}, {
"key" : "eod_mets",
"name" : "EOD Mets",
"naaccr_item" : 776,
"default" : "00",
"table" : "mets_han",
"used_for_staging" : true
}, {
"key" : "ss2018",
"name" : "SS2018",
"naaccr_item" : 764,
"table" : "ss2018_cervix_64954",
"used_for_staging" : false
}, {
"key" : "grade_clin",
"name" : "Grade Clinical",
"naaccr_item" : 3843,
"default" : "9",
"table" : "grade_clinical_6485",
"used_for_staging" : false,
"metadata" : [ "COC_REQUIRED", "NPCR_REQUIRED", "SSDI", "CCCR_REQUIRED", "SEER_REQUIRED" ]
}, {
"key" : "grade_path",
"name" : "Grade Pathological",
"naaccr_item" : 3844,
"default" : "9",
"table" : "grade_pathological_84704",
"used_for_staging" : false,
"metadata" : [ "COC_REQUIRED", "NPCR_REQUIRED", "SSDI", "CCCR_REQUIRED", "SEER_REQUIRED" ]
}, {
"key" : "grade_post_therapy",
"name" : "Grade Post Therapy",
"naaccr_item" : 3845,
"table" : "grade_post_therapy_45742",
"used_for_staging" : false,
"metadata" : [ "COC_REQUIRED", "NPCR_REQUIRED", "SSDI", "CCCR_REQUIRED", "SEER_REQUIRED" ]
}, {
"key" : "figo",
"name" : "FIGO Stage",
"naaccr_item" : 3836,
"default" : "98",
"table" : "figo_stage_cervix_46535",
"used_for_staging" : false,
"metadata" : [ "COC_REQUIRED", "SSDI", "SEER_REQUIRED" ]
}, {
"key" : "ln_status",
"name" : "LN Status Femoral-Inguinal, Para-aortic, Pelvic",
"naaccr_item" : 3884,
"default" : "8",
"table" : "lymph_node_status_24997",
"used_for_staging" : false,
"metadata" : [ "COC_REQUIRED", "SSDI", "SEER_REQUIRED" ]
}, {
"key" : "ln_assessment_femoral",
"name" : "Lymph Nodes Assessment Method Femoral-Inguinal",
"naaccr_item" : 3871,
"default" : "8",
"table" : "lymph_nodes_assessment_method_femoral_46948",
"used_for_staging" : false,
"metadata" : [ "COC_REQUIRED", "SSDI", "SEER_REQUIRED" ]
}, {
"key" : "ln_assessment_para_aortic",
"name" : "Lymph Nodes Assessment Method Para-aortic",
"naaccr_item" : 3872,
"default" : "8",
"table" : "lymph_nodes_assessment_method_para_aortic_56026",
"used_for_staging" : false,
"metadata" : [ "COC_REQUIRED", "SSDI", "SEER_REQUIRED" ]
}, {
"key" : "ln_assessment_pelvic",
"name" : "Lymph Nodes Assessment Method Pelvic",
"naaccr_item" : 3873,
"default" : "8",
"table" : "lymph_nodes_assessment_method_pelvic_33476",
"used_for_staging" : false,
"metadata" : [ "COC_REQUIRED", "SSDI", "SEER_REQUIRED" ]
}, {
"key" : "ln_distant_mediastinal_scalene",
"name" : "Lymph Nodes Distant: Mediastinal, Scalene",
"naaccr_item" : 3875,
"default" : "8",
"table" : "lymph_nodes_distant_mediastinal_scalene_90567",
"used_for_staging" : false,
"metadata" : [ "COC_REQUIRED", "SSDI", "SEER_REQUIRED" ]
}, {
"key" : "ln_distant_assessment",
"name" : "Lymph Nodes Distant Assessment Method",
"naaccr_item" : 3874,
"default" : "8",
"table" : "lymph_nodes_distant_assessment_method_24499",
"used_for_staging" : false,
"metadata" : [ "COC_REQUIRED", "SSDI", "SEER_REQUIRED" ]
} ],
"outputs" : [ {
"key" : "naaccr_schema_id",
"name" : "Schema ID",
"naaccr_item" : 3800,
"default" : "00520"
}, {
"key" : "ajcc_id",
"name" : "AJCC ID",
"naaccr_item" : 995,
"default" : "XX"
}, {
"key" : "derived_version",
"name" : "Derived Version",
"default" : "{{ctx_alg_version}}"
}, {
"key" : "eod_2018_t",
"name" : "Derived EOD 2018 T",
"naaccr_item" : 785,
"default" : "88"
}, {
"key" : "eod_2018_n",
"name" : "Derived EOD 2018 N",
"naaccr_item" : 815,
"default" : "88"
}, {
"key" : "eod_2018_m",
"name" : "Derived EOD 2018 M",
"naaccr_item" : 795,
"default" : "88"
}, {
"key" : "eod_2018_stage_group",
"name" : "Derived EOD 2018 Stage Group",
"naaccr_item" : 818,
"default" : "88"
}, {
"key" : "ss2018_derived",
"name" : "Derived Summary Stage 2018",
"naaccr_item" : 762,
"default" : "9"
} ],
"mappings" : [ {
"id" : "summary_stage_2018",
"name" : "Summary Stage 2018",
"initial_context" : [ {
"key" : "ss2018_derived",
"value" : "90"
} ],
"tables" : [ {
"id" : "extension_bbk",
"inputs" : [ "size_summary", "eod_primary_tumor" ],
"outputs" : [ "eod_2018_t", "ss2018_t" ]
}, {
"id" : "nodes_dbc",
"inputs" : [ "eod_regional_nodes" ],
"outputs" : [ "eod_2018_n", "ss2018_n" ]
}, {
"id" : "mets_han",
"inputs" : [ "eod_mets" ],
"outputs" : [ "eod_2018_m", "ss2018_m" ]
}, {
"id" : "summary_stage_rpa",
"inputs" : [ "ss2018_m", "ss2018_n", "ss2018_t" ],
"outputs" : [ "ss2018_derived" ]
} ]
}, {
"id" : "ajcc_chapter_calculation",
"name" : "AJCC Chapter Calculation",
"tables" : [ {
"id" : "ajcc_chapter_calculation_5517",
"inputs" : [ "hist", "behavior" ],
"outputs" : [ "ajcc_id" ]
} ]
}, {
"id" : "eod_2018_stage_group",
"name" : "EOD 2018 Stage Group",
"inclusion_tables" : [ {
"id" : "tnm8_inclusions_20667",
"inputs" : [ "ajcc_id" ]
} ],
"initial_context" : [ {
"key" : "eod_2018_stage_group",
"value" : "90"
} ],
"tables" : [ {
"id" : "parse_t_2177",
"input_mapping" : [ {
"from" : "eod_2018_t",
"to" : "t"
} ],
"output_mapping" : [ {
"from" : "root_t",
"to" : "tmp_eod_t"
} ],
"inputs" : [ "eod_2018_t" ],
"outputs" : [ "t_prefix", "tmp_eod_t" ]
}, {
"id" : "parse_n_67182",
"input_mapping" : [ {
"from" : "eod_2018_n",
"to" : "n"
} ],
"output_mapping" : [ {
"from" : "root_n",
"to" : "tmp_eod_n"
} ],
"inputs" : [ "eod_2018_n" ],
"outputs" : [ "n_prefix", "tmp_eod_n" ]
}, {
"id" : "parse_m_47057",
"input_mapping" : [ {
"from" : "eod_2018_m",
"to" : "m"
} ],
"output_mapping" : [ {
"from" : "root_m",
"to" : "tmp_eod_m"
} ],
"inputs" : [ "eod_2018_m" ],
"outputs" : [ "m_prefix", "tmp_eod_m" ]
}, {
"id" : "tnm_8_path_stage_group_for_eod_23339",
"input_mapping" : [ {
"from" : "tmp_eod_n",
"to" : "n"
}, {
"from" : "tmp_eod_m",
"to" : "m"
}, {
"from" : "tmp_eod_t",
"to" : "t"
} ],
"output_mapping" : [ {
"from" : "stage",
"to" : "eod_2018_stage_group"
} ],
"inputs" : [ "tmp_eod_n", "tmp_eod_m", "tmp_eod_t" ],
"outputs" : [ "eod_2018_stage_group" ]
} ]
}, {
"id" : "eod_tnm_cleanup",
"name" : "EOD TNM Cleanup",
"exclusion_tables" : [ {
"id" : "tnm8_inclusions_20667",
"inputs" : [ "ajcc_id" ]
} ],
"tables" : [ {
"id" : "eod_tnm_component_cleanup_58170",
"inputs" : [ "ajcc_id" ],
"outputs" : [ "eod_2018_n", "eod_2018_m", "eod_2018_t", "eod_2018_stage_group" ]
} ]
} ],
"involved_tables" : [ "lymph_nodes_distant_assessment_method_24499", "nodes_dbc", "mets_han", "radiation_surg_seq", "grade_clinical_6485", "nodes_pos_fpa", "parse_t_2177", "parse_n_67182", "lymph_node_status_24997", "histology", "nodes_exam_76029", "lymph_nodes_assessment_method_femoral_46948", "extension_bbk", "tumor_size_summary_63115", "tnm_8_path_stage_group_for_eod_23339", "behavior", "figo_stage_cervix_46535", "tumor_size_pathological_25597", "tumor_size_clinical_60979", "systemic_surg_seq", "ajcc_chapter_calculation_5517", "lymph_nodes_assessment_method_pelvic_33476", "parse_m_47057", "primary_site", "schema_selection_cervix", "lymph_nodes_distant_mediastinal_scalene_90567", "tnm8_inclusions_20667", "tumor_size_with_primary_tumor_for_ajcc_t_59134", "eod_tnm_component_cleanup_58170", "ss2018_cervix_64954", "grade_pathological_84704", "grade_post_therapy_45742", "year_dx_validation", "lymph_nodes_assessment_method_para_aortic_56026", "summary_stage_rpa" ],
"on_invalid_input" : "FAIL_WHEN_USED_FOR_STAGING",
"last_modified" : "2018-03-12T16:41:39.951Z"
}
