algorithms.eod_public.1.0.schemas.cutaneous_squamous_cell_carcinoma_head_neck.json Maven / Gradle / Ivy

{
  "id" : "cutaneous_squamous_cell_carcinoma_head_neck",
  "algorithm" : "eod_public",
  "version" : "1.0",
  "name" : "Cutaneous Squamous Cell Carcinoma of Head and Neck",
  "title" : "Cutaneous Squamous Cell Carcinoma of Head and Neck",
  "subtitle" : "Excluding Skin of Eyelid and Malignant Melanoma, Merkel Cell Carcinoma, Kaposi Sarcoma, Mycosis Fungoides, Sezary Disease, and Other Lymphomas",
  "notes" : "C000 Vermilion border of upper lip (excludes external upper lip)\nC001 Vermilion border of lower lip (excludes external lower lip)\nC002 Vermilion border of lip, NOS (excludes external lip, NOS)\nC006 Commissure of lip\nC440 Skin of lip, NOS\nC442 External ear \nC443 Skin of other and unspecified parts of face \nC444 Skin of scalp and neck \n\n**Note 1:** The following sources were used in the development of this schema\n* SEER Extent of Disease 1988: Codes and Coding Instructions (3rd Edition, 1998) (https://seer.cancer.gov/archive/manuals/EOD10Dig.3rd.pdf)\n* SEER Summary Staging Manual-2000: Codes and Coding Instructions (https://seer.cancer.gov/tools/ssm/)\n* Collaborative Stage Data Collection System, version 02.05:  https://cancerstaging.org/cstage/Pages/default.aspx \n* Chapter 15 *Cutaneous Squamous Cell Carcinoma of the Head and Neck*, in the AJCC Cancer Staging Manual, Eighth Edition (2017) published by Springer International Publishing. Used with permission of the American College of Surgeons, Chicago, Illinois.\n\n**Note 2:** Summary Stage is the only applicable staging system for the following sites. See the **Skin Other** schema.\n* C445: Skin of trunk\n* C446: Skin of upper limb and shoulder\n* C447: Skin of lower limb and hip\n* C448: Overlapping lesion of skin\n* C449: Skin, NOS\n\n**Note 3:** Summary Stage is the only applicable staging system for Scrotum. See the Male Genital Organ schema\n\n**Note 4:** For skin cancers overlapping sites in the head and neck ONLY, assign the primary site code for the site  where the bulk of the tumor is or where the epicenter is.  Do not use code C448.",
  "schema_selection_table" : "schema_selection_cutaneous_squamous_cell_carcinoma_head_and_neck",
  "inputs" : [ {
    "key" : "year_dx",
    "name" : "Year of Diagnosis",
    "naaccr_item" : 390,
    "table" : "year_dx_validation",
    "used_for_staging" : false
  }, {
    "key" : "site",
    "name" : "Primary Site",
    "naaccr_item" : 400,
    "table" : "primary_site",
    "used_for_staging" : true
  }, {
    "key" : "hist",
    "name" : "Histology",
    "naaccr_item" : 522,
    "table" : "histology",
    "used_for_staging" : true
  }, {
    "key" : "behavior",
    "name" : "Behavior",
    "naaccr_item" : 523,
    "table" : "behavior",
    "used_for_staging" : false
  }, {
    "key" : "size_clin",
    "name" : "Tumor Size Clinical",
    "naaccr_item" : 752,
    "table" : "tumor_size_clinical_60979",
    "used_for_staging" : false
  }, {
    "key" : "size_path",
    "name" : "Tumor Size Pathological",
    "naaccr_item" : 754,
    "table" : "tumor_size_pathological_25597",
    "used_for_staging" : false
  }, {
    "key" : "size_summary",
    "name" : "Tumor Size Summary",
    "naaccr_item" : 756,
    "default" : "999",
    "table" : "tumor_size_summary_63115",
    "used_for_staging" : true
  }, {
    "key" : "nodes_pos",
    "name" : "Regional Nodes Positive",
    "naaccr_item" : 820,
    "default" : "99",
    "table" : "nodes_pos_fah",
    "used_for_staging" : false
  }, {
    "key" : "nodes_exam",
    "name" : "Regional Nodes Examined",
    "naaccr_item" : 830,
    "default" : "99",
    "table" : "nodes_exam_76029",
    "used_for_staging" : false
  }, {
    "key" : "radiation_surg_seq",
    "name" : "RX Summ Surgery/Radiation Sequence",
    "naaccr_item" : 1380,
    "table" : "radiation_surg_seq",
    "used_for_staging" : false
  }, {
    "key" : "systemic_surg_seq",
    "name" : "RX Summ Systemic/Surgery Sequence",
    "naaccr_item" : 1639,
    "table" : "systemic_surg_seq",
    "used_for_staging" : false
  }, {
    "key" : "eod_primary_tumor",
    "name" : "EOD Primary Tumor",
    "naaccr_item" : 772,
    "default" : "999",
    "table" : "seer_primary_tumor_9084",
    "used_for_staging" : true
  }, {
    "key" : "eod_regional_nodes",
    "name" : "EOD Regional Nodes",
    "naaccr_item" : 774,
    "default" : "999",
    "table" : "eod_regional_nodes_7080",
    "used_for_staging" : true
  }, {
    "key" : "eod_mets",
    "name" : "EOD Mets",
    "naaccr_item" : 776,
    "default" : "00",
    "table" : "eod_mets_3742",
    "used_for_staging" : true
  }, {
    "key" : "ss2018",
    "name" : "SS2018",
    "naaccr_item" : 764,
    "table" : "ss2018_skin_other_56341",
    "used_for_staging" : false
  }, {
    "key" : "grade_clin",
    "name" : "Grade Clinical",
    "naaccr_item" : 3843,
    "default" : "9",
    "table" : "grade_clinical_73056",
    "used_for_staging" : false,
    "metadata" : [ "COC_REQUIRED", "NPCR_REQUIRED", "SSDI", "CCCR_REQUIRED", "SEER_REQUIRED" ]
  }, {
    "key" : "grade_path",
    "name" : "Grade Pathological",
    "naaccr_item" : 3844,
    "default" : "9",
    "table" : "grade_pathological_31963",
    "used_for_staging" : false,
    "metadata" : [ "COC_REQUIRED", "NPCR_REQUIRED", "SSDI", "CCCR_REQUIRED", "SEER_REQUIRED" ]
  }, {
    "key" : "grade_post_therapy",
    "name" : "Grade Post Therapy",
    "naaccr_item" : 3845,
    "table" : "grade_post_therapy_6526",
    "used_for_staging" : false,
    "metadata" : [ "COC_REQUIRED", "NPCR_REQUIRED", "SSDI", "CCCR_REQUIRED", "SEER_REQUIRED" ]
  }, {
    "key" : "perineural_invasion",
    "name" : "Perineural Invasion",
    "naaccr_item" : 3909,
    "default" : "8",
    "table" : "perineural_invasion_24604",
    "used_for_staging" : false,
    "metadata" : [ "COC_REQUIRED", "SSDI", "SEER_REQUIRED" ]
  }, {
    "key" : "ln_size_of_mets",
    "name" : "Lymph Nodes Size of Mets",
    "naaccr_item" : 3883,
    "default" : "XX.8",
    "table" : "lymph_nodes_size_of_metastasis_87329",
    "used_for_staging" : false,
    "metadata" : [ "COC_REQUIRED", "NPCR_REQUIRED", "SSDI", "CCCR_REQUIRED", "SEER_REQUIRED" ]
  }, {
    "key" : "high_risk_features",
    "name" : "High Risk Features",
    "naaccr_item" : 3858,
    "default" : "8",
    "table" : "high_risk_features_73750",
    "used_for_staging" : false,
    "metadata" : [ "COC_REQUIRED", "SSDI", "SEER_REQUIRED" ]
  } ],
  "outputs" : [ {
    "key" : "naaccr_schema_id",
    "name" : "Schema ID",
    "naaccr_item" : 3800,
    "default" : "00150"
  }, {
    "key" : "ajcc_id",
    "name" : "AJCC ID",
    "naaccr_item" : 995,
    "default" : "XX"
  }, {
    "key" : "derived_version",
    "name" : "Derived Version",
    "default" : "{{ctx_alg_version}}"
  }, {
    "key" : "eod_2018_t",
    "name" : "Derived EOD 2018 T",
    "naaccr_item" : 785,
    "default" : "88"
  }, {
    "key" : "eod_2018_n",
    "name" : "Derived EOD 2018 N",
    "naaccr_item" : 815,
    "default" : "88"
  }, {
    "key" : "eod_2018_m",
    "name" : "Derived EOD 2018 M",
    "naaccr_item" : 795,
    "default" : "88"
  }, {
    "key" : "eod_2018_stage_group",
    "name" : "Derived EOD 2018 Stage Group",
    "naaccr_item" : 818,
    "default" : "88"
  }, {
    "key" : "ss2018_derived",
    "name" : "Derived Summary Stage 2018",
    "naaccr_item" : 762,
    "default" : "9"
  } ],
  "mappings" : [ {
    "id" : "summary_stage_2018",
    "name" : "Summary Stage 2018",
    "initial_context" : [ {
      "key" : "ss2018_derived",
      "value" : "90"
    } ],
    "tables" : [ {
      "id" : "seer_primary_tumor_9084",
      "inputs" : [ "size_summary", "eod_primary_tumor" ],
      "outputs" : [ "eod_2018_t", "ss2018_t" ]
    }, {
      "id" : "eod_regional_nodes_7080",
      "inputs" : [ "eod_regional_nodes" ],
      "outputs" : [ "eod_2018_n", "ss2018_n" ]
    }, {
      "id" : "eod_mets_3742",
      "inputs" : [ "eod_mets" ],
      "outputs" : [ "eod_2018_m", "ss2018_m" ]
    }, {
      "id" : "summary_stage_rac",
      "inputs" : [ "ss2018_m", "ss2018_n", "ss2018_t" ],
      "outputs" : [ "ss2018_derived" ]
    } ]
  }, {
    "id" : "ajcc_chapter_calculation",
    "name" : "AJCC Chapter Calculation",
    "tables" : [ {
      "id" : "ajcc_chapter_calculation_75770",
      "inputs" : [ "site", "hist" ],
      "outputs" : [ "ajcc_id" ]
    } ]
  }, {
    "id" : "eod_2018_stage_group",
    "name" : "EOD 2018 Stage Group",
    "inclusion_tables" : [ {
      "id" : "tnm8_inclusions_83218",
      "inputs" : [ "ajcc_id" ]
    } ],
    "initial_context" : [ {
      "key" : "eod_2018_stage_group",
      "value" : "90"
    } ],
    "tables" : [ {
      "id" : "parse_t_2177",
      "input_mapping" : [ {
        "from" : "eod_2018_t",
        "to" : "t"
      } ],
      "output_mapping" : [ {
        "from" : "root_t",
        "to" : "tmp_eod_t"
      } ],
      "inputs" : [ "eod_2018_t" ],
      "outputs" : [ "t_prefix", "tmp_eod_t" ]
    }, {
      "id" : "parse_n_67182",
      "input_mapping" : [ {
        "from" : "eod_2018_n",
        "to" : "n"
      } ],
      "output_mapping" : [ {
        "from" : "root_n",
        "to" : "tmp_eod_n"
      } ],
      "inputs" : [ "eod_2018_n" ],
      "outputs" : [ "n_prefix", "tmp_eod_n" ]
    }, {
      "id" : "parse_m_47057",
      "input_mapping" : [ {
        "from" : "eod_2018_m",
        "to" : "m"
      } ],
      "output_mapping" : [ {
        "from" : "root_m",
        "to" : "tmp_eod_m"
      } ],
      "inputs" : [ "eod_2018_m" ],
      "outputs" : [ "m_prefix", "tmp_eod_m" ]
    }, {
      "id" : "tnm_8_path_stage_group_90415",
      "input_mapping" : [ {
        "from" : "tmp_eod_n",
        "to" : "n"
      }, {
        "from" : "tmp_eod_m",
        "to" : "m"
      }, {
        "from" : "tmp_eod_t",
        "to" : "t"
      } ],
      "output_mapping" : [ {
        "from" : "stage",
        "to" : "eod_2018_stage_group"
      } ],
      "inputs" : [ "tmp_eod_n", "tmp_eod_m", "tmp_eod_t" ],
      "outputs" : [ "eod_2018_stage_group" ]
    } ]
  }, {
    "id" : "eod_tnm_cleanup",
    "name" : "EOD TNM Cleanup",
    "exclusion_tables" : [ {
      "id" : "tnm8_inclusions_83218",
      "inputs" : [ "ajcc_id" ]
    } ],
    "tables" : [ {
      "id" : "eod_tnm_component_cleanup_58170",
      "inputs" : [ "ajcc_id" ],
      "outputs" : [ "eod_2018_n", "eod_2018_m", "eod_2018_t", "eod_2018_stage_group" ]
    } ]
  } ],
  "involved_tables" : [ "nodes_pos_fah", "radiation_surg_seq", "eod_regional_nodes_7080", "grade_pathological_31963", "summary_stage_rac", "parse_t_2177", "grade_post_therapy_6526", "parse_n_67182", "tnm_8_path_stage_group_90415", "histology", "nodes_exam_76029", "lymph_nodes_size_of_metastasis_87329", "tumor_size_summary_63115", "behavior", "ajcc_chapter_calculation_75770", "tnm8_inclusions_83218", "perineural_invasion_24604", "tumor_size_with_primary_tumor_for_ajcc_t_55569", "high_risk_features_73750", "tumor_size_pathological_25597", "schema_selection_cutaneous_squamous_cell_carcinoma_head_and_neck", "systemic_surg_seq", "tumor_size_clinical_60979", "eod_mets_3742", "parse_m_47057", "primary_site", "ss2018_skin_other_56341", "eod_tnm_component_cleanup_58170", "year_dx_validation", "grade_clinical_73056", "seer_primary_tumor_9084" ],
  "on_invalid_input" : "FAIL_WHEN_USED_FOR_STAGING",
  "last_modified" : "2018-03-12T16:41:45.786Z"
}