algorithms.eod_public.1.0.schemas.mycosis_fungoides.json Maven / Gradle / Ivy

{
  "id" : "mycosis_fungoides",
  "algorithm" : "eod_public",
  "version" : "1.0",
  "name" : "Mycosis Fungoides",
  "title" : "Mycosis Fungoides and Sezary Disease of Skin, Vulva, Penis, Scrotum",
  "notes" : "C000 Vermilion border of upper lip (excludes external upper lip)\nC001 Vermilion border of lower lip (excludes external lower lip)\nC002 Vermilion border of lip, NOS (excludes external lip, NOS)\nC006 Commissure of lip\nC440 Skin of lip, NOS\nC441 Skin of eyelid \nC442 External ear \nC443 Skin of other and unspecified parts of face \nC444 Skin of scalp and neck\nC445 Skin of trunk \nC446 Skin of upper limb and shoulder \nC447 Skin of lower limb and hip \nC448 Overlapping lesion of skin\nC449 Skin, NOS\nC510 Labium majus\nC511 Labium minus\nC512 Clitoris\nC518 Overlapping lesion of vulva\nC519 Vulva, NOS\nC600 Prepuce\nC601 Glans penis\nC602 Body of penis\nC608 Overlapping lesion of penis\nC609 Penis\nC632 Scrotum, NOS\n\n**Note:** The following sources were used in the development of this schema\n* SEER Extent of Disease 1988: Codes and Coding Instructions (3rd Edition, 1998) (https://seer.cancer.gov/archive/manuals/EOD10Dig.3rd.pdf)\n* SEER Summary Staging Manual-2000: Codes and Coding Instructions (https://seer.cancer.gov/tools/ssm/)\n* Collaborative Stage Data Collection System, version 02.05:  https://cancerstaging.org/cstage/Pages/default.aspx \n* Chapter 81 *Primary Cutaneous Lymphomas*, in the AJCC Cancer Staging Manual, Eighth Edition (2017) published by Springer International Publishing. Used with permission of the American College of Surgeons, Chicago, Illinois.",
  "schema_selection_table" : "schema_selection_mycosis_fungoides",
  "inputs" : [ {
    "key" : "year_dx",
    "name" : "Year of Diagnosis",
    "naaccr_item" : 390,
    "table" : "year_dx_validation",
    "used_for_staging" : false
  }, {
    "key" : "site",
    "name" : "Primary Site",
    "naaccr_item" : 400,
    "table" : "primary_site",
    "used_for_staging" : true
  }, {
    "key" : "hist",
    "name" : "Histology",
    "naaccr_item" : 522,
    "table" : "histology",
    "used_for_staging" : true
  }, {
    "key" : "size_clin",
    "name" : "Tumor Size Clinical",
    "naaccr_item" : 752,
    "table" : "tumor_size_clinical_60979",
    "used_for_staging" : false
  }, {
    "key" : "size_path",
    "name" : "Tumor Size Pathological",
    "naaccr_item" : 754,
    "table" : "tumor_size_pathological_25597",
    "used_for_staging" : false
  }, {
    "key" : "size_summary",
    "name" : "Tumor Size Summary",
    "naaccr_item" : 756,
    "default" : "999",
    "table" : "tumor_size_summary_63115",
    "used_for_staging" : false
  }, {
    "key" : "nodes_pos",
    "name" : "Regional Nodes Positive",
    "naaccr_item" : 820,
    "default" : "99",
    "table" : "nodes_pos_fpa",
    "used_for_staging" : false
  }, {
    "key" : "nodes_exam",
    "name" : "Regional Nodes Examined",
    "naaccr_item" : 830,
    "default" : "99",
    "table" : "nodes_exam_76029",
    "used_for_staging" : false
  }, {
    "key" : "radiation_surg_seq",
    "name" : "RX Summ Surgery/Radiation Sequence",
    "naaccr_item" : 1380,
    "table" : "radiation_surg_seq",
    "used_for_staging" : false
  }, {
    "key" : "systemic_surg_seq",
    "name" : "RX Summ Systemic/Surgery Sequence",
    "naaccr_item" : 1639,
    "table" : "systemic_surg_seq",
    "used_for_staging" : false
  }, {
    "key" : "eod_primary_tumor",
    "name" : "EOD Primary Tumor",
    "naaccr_item" : 772,
    "default" : "999",
    "table" : "extension_bcp",
    "used_for_staging" : true
  }, {
    "key" : "eod_regional_nodes",
    "name" : "EOD Regional Nodes",
    "naaccr_item" : 774,
    "default" : "999",
    "table" : "nodes_dce",
    "used_for_staging" : true
  }, {
    "key" : "eod_mets",
    "name" : "EOD Mets",
    "naaccr_item" : 776,
    "default" : "00",
    "table" : "mets_haz",
    "used_for_staging" : true
  }, {
    "key" : "ss2018",
    "name" : "SS2018",
    "naaccr_item" : 764,
    "table" : "ss2018_mycosis_fungoides_94448",
    "used_for_staging" : false
  }, {
    "key" : "grade_clin",
    "name" : "Grade Clinical",
    "naaccr_item" : 3843,
    "default" : "8",
    "table" : "grade_clinical_18316",
    "used_for_staging" : false,
    "metadata" : [ "NPCR_REQUIRED", "COC_REQUIRED", "SSDI", "CCCR_REQUIRED", "SEER_REQUIRED" ]
  }, {
    "key" : "grade_path",
    "name" : "Grade Pathological",
    "naaccr_item" : 3844,
    "default" : "8",
    "table" : "grade_pathological_73388",
    "used_for_staging" : false,
    "metadata" : [ "COC_REQUIRED", "NPCR_REQUIRED", "SSDI", "CCCR_REQUIRED", "SEER_REQUIRED" ]
  }, {
    "key" : "grade_post_therapy",
    "name" : "Grade Post Therapy",
    "naaccr_item" : 3845,
    "table" : "grade_post_therapy_72642",
    "used_for_staging" : false,
    "metadata" : [ "COC_REQUIRED", "NPCR_REQUIRED", "SSDI", "CCCR_REQUIRED", "SEER_REQUIRED" ]
  }, {
    "key" : "peripheral_blood_involv",
    "name" : "Peripheral Blood Involv",
    "naaccr_item" : 3910,
    "default" : "9",
    "table" : "peripheral_blood_involv_92357",
    "used_for_staging" : true,
    "metadata" : [ "COC_REQUIRED", "NPCR_REQUIRED", "SSDI", "CCCR_REQUIRED", "SEER_REQUIRED" ]
  } ],
  "outputs" : [ {
    "key" : "naaccr_schema_id",
    "name" : "Schema ID",
    "naaccr_item" : 3800,
    "default" : "00811"
  }, {
    "key" : "ajcc_id",
    "name" : "AJCC ID",
    "naaccr_item" : 995,
    "default" : "XX"
  }, {
    "key" : "derived_version",
    "name" : "Derived Version",
    "default" : "{{ctx_alg_version}}"
  }, {
    "key" : "eod_2018_t",
    "name" : "Derived EOD 2018 T",
    "naaccr_item" : 785,
    "default" : "88"
  }, {
    "key" : "eod_2018_n",
    "name" : "Derived EOD 2018 N",
    "naaccr_item" : 815,
    "default" : "88"
  }, {
    "key" : "eod_2018_m",
    "name" : "Derived EOD 2018 M",
    "naaccr_item" : 795,
    "default" : "88"
  }, {
    "key" : "eod_2018_stage_group",
    "name" : "Derived EOD 2018 Stage Group",
    "naaccr_item" : 818,
    "default" : "88"
  }, {
    "key" : "ss2018_derived",
    "name" : "Derived Summary Stage 2018",
    "naaccr_item" : 762,
    "default" : "9"
  } ],
  "mappings" : [ {
    "id" : "summary_stage_2018",
    "name" : "Summary Stage 2018",
    "initial_context" : [ {
      "key" : "ss2018_derived",
      "value" : "90"
    } ],
    "tables" : [ {
      "id" : "extension_bcp",
      "inputs" : [ "eod_primary_tumor" ],
      "outputs" : [ "eod_2018_t", "ss2018_t" ]
    }, {
      "id" : "nodes_dce",
      "inputs" : [ "eod_regional_nodes" ],
      "outputs" : [ "eod_2018_n", "ss2018_n" ]
    }, {
      "id" : "mets_haz",
      "inputs" : [ "eod_mets" ],
      "outputs" : [ "eod_2018_m", "ss2018_m" ]
    }, {
      "id" : "summary_stage_rpa",
      "inputs" : [ "ss2018_m", "ss2018_n", "ss2018_t" ],
      "outputs" : [ "ss2018_derived" ]
    } ]
  }, {
    "id" : "ajcc_chapter_calculation",
    "name" : "AJCC Chapter Calculation",
    "tables" : [ {
      "id" : "ajcc_chapter_calculation_57603",
      "inputs" : [ "site", "hist" ],
      "outputs" : [ "ajcc_id" ]
    } ]
  }, {
    "id" : "eod_2018_stage_group",
    "name" : "EOD 2018 Stage Group",
    "inclusion_tables" : [ {
      "id" : "tnm8_inclusions_tpw",
      "inputs" : [ "ajcc_id" ]
    } ],
    "initial_context" : [ {
      "key" : "eod_2018_stage_group",
      "value" : "90"
    } ],
    "tables" : [ {
      "id" : "parse_t_2177",
      "input_mapping" : [ {
        "from" : "eod_2018_t",
        "to" : "t"
      } ],
      "output_mapping" : [ {
        "from" : "root_t",
        "to" : "tmp_eod_t"
      } ],
      "inputs" : [ "eod_2018_t" ],
      "outputs" : [ "t_prefix", "tmp_eod_t" ]
    }, {
      "id" : "parse_n_67182",
      "input_mapping" : [ {
        "from" : "eod_2018_n",
        "to" : "n"
      } ],
      "output_mapping" : [ {
        "from" : "root_n",
        "to" : "tmp_eod_n"
      } ],
      "inputs" : [ "eod_2018_n" ],
      "outputs" : [ "n_prefix", "tmp_eod_n" ]
    }, {
      "id" : "parse_m_47057",
      "input_mapping" : [ {
        "from" : "eod_2018_m",
        "to" : "m"
      } ],
      "output_mapping" : [ {
        "from" : "root_m",
        "to" : "tmp_eod_m"
      } ],
      "inputs" : [ "eod_2018_m" ],
      "outputs" : [ "m_prefix", "tmp_eod_m" ]
    }, {
      "id" : "peripheral_blood_involv_92357",
      "inputs" : [ "peripheral_blood_involv" ],
      "outputs" : [ "b_map" ]
    }, {
      "id" : "tnm_8_path_stage_group_for_eod_50745",
      "input_mapping" : [ {
        "from" : "tmp_eod_n",
        "to" : "n"
      }, {
        "from" : "tmp_eod_m",
        "to" : "m"
      }, {
        "from" : "tmp_eod_t",
        "to" : "t"
      } ],
      "output_mapping" : [ {
        "from" : "stage",
        "to" : "eod_2018_stage_group"
      } ],
      "inputs" : [ "tmp_eod_n", "tmp_eod_m", "tmp_eod_t", "b_map" ],
      "outputs" : [ "eod_2018_stage_group" ]
    } ]
  }, {
    "id" : "eod_tnm_cleanup",
    "name" : "EOD TNM Cleanup",
    "exclusion_tables" : [ {
      "id" : "tnm8_inclusions_tpw",
      "inputs" : [ "ajcc_id" ]
    } ],
    "tables" : [ {
      "id" : "eod_tnm_component_cleanup_58170",
      "inputs" : [ "ajcc_id" ],
      "outputs" : [ "eod_2018_n", "eod_2018_m", "eod_2018_t", "eod_2018_stage_group" ]
    } ]
  } ],
  "involved_tables" : [ "grade_post_therapy_72642", "radiation_surg_seq", "peripheral_blood_involv_92357", "nodes_pos_fpa", "parse_t_2177", "parse_n_67182", "mets_haz", "histology", "nodes_exam_76029", "ajcc_chapter_calculation_57603", "tumor_size_summary_63115", "tnm8_inclusions_tpw", "ss2018_mycosis_fungoides_94448", "tumor_size_pathological_25597", "nodes_dce", "systemic_surg_seq", "tumor_size_clinical_60979", "tnm_8_path_stage_group_for_eod_50745", "parse_m_47057", "primary_site", "eod_tnm_component_cleanup_58170", "year_dx_validation", "summary_stage_rpa", "grade_clinical_18316", "extension_bcp", "grade_pathological_73388", "schema_selection_mycosis_fungoides" ],
  "on_invalid_input" : "FAIL_WHEN_USED_FOR_STAGING",
  "last_modified" : "2018-03-12T16:41:32.998Z"
}