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algorithms.tnm.1.6.schemas.appendix.json Maven / Gradle / Ivy

{
  "id": "appendix",
  "algorithm": "tnm",
  "version": "1.6",
  "name": "Appendix",
  "title": "Carcinomas of the Appendix (excluding Carcinoid Tumor and Neuroendocrine Carcinoma)",
  "notes": "C181 Appendix\n\n**Note 1:** This schema is based on the UICC chapter *Appendix-Carcinoma,* pages 86-90.\n\n**Note 2:** Carcinoid tumor and neuroendocrine carcinoma (histology codes 8153, 8240-8242, 8246, 8249) of the appendix are included in the \"CarcinoidAppendix\" schema.\n\n**Note 3:** In addition to directly assigning TNM, Summary Stage 2000 (SS2000) must be captured.  If directly assigning SS2000, use the *Colon* chapter on page 94 of the [SS2000 on-line manual](http://seer.cancer.gov/tools/ssm/SSSM2000-122012.pdf#page=94).",
  "schema_selection_table": "schema_selection_appendix",
  "inputs": [
    {
      "key": "year_dx",
      "name": "Year of Diagnosis",
      "naaccr_item": 390,
      "table": "year_dx_validation",
      "used_for_staging": false
    },
    {
      "key": "site",
      "name": "Primary Site",
      "naaccr_item": 400,
      "table": "primary_site",
      "used_for_staging": true
    },
    {
      "key": "hist",
      "name": "Histology",
      "naaccr_item": 522,
      "table": "histology",
      "used_for_staging": true
    },
    {
      "key": "behavior",
      "name": "Behavior",
      "naaccr_item": 523,
      "table": "behavior",
      "used_for_staging": true
    },
    {
      "key": "systemic_surg_seq",
      "name": "RX Summ Systemic/Surgery Sequence",
      "naaccr_item": 1639,
      "table": "systemic_surg_seq",
      "used_for_staging": true
    },
    {
      "key": "radiation_surg_seq",
      "name": "RX Summ Surgery/Radiation Sequence",
      "naaccr_item": 1380,
      "table": "radiation_surg_seq",
      "used_for_staging": true
    },
    {
      "key": "nodes_pos",
      "name": "Regional Nodes Positive",
      "naaccr_item": 820,
      "table": "nodes_pos_fpa",
      "used_for_staging": true
    },
    {
      "key": "clin_t",
      "name": "Clinical T",
      "naaccr_item": 940,
      "table": "clin_t_appendix_24847",
      "used_for_staging": true
    },
    {
      "key": "clin_n",
      "name": "Clinical N",
      "naaccr_item": 950,
      "table": "clin_n_dfc",
      "used_for_staging": true
    },
    {
      "key": "clin_m",
      "name": "Clinical M",
      "naaccr_item": 960,
      "table": "clin_m_hcf",
      "used_for_staging": true
    },
    {
      "key": "path_t",
      "name": "Pathologic T",
      "naaccr_item": 880,
      "table": "path_t_appendix_94760",
      "used_for_staging": true
    },
    {
      "key": "path_n",
      "name": "Pathologic N",
      "naaccr_item": 890,
      "table": "path_n_dfc",
      "used_for_staging": true
    },
    {
      "key": "path_m",
      "name": "Pathologic M",
      "naaccr_item": 900,
      "table": "path_m_hcf",
      "used_for_staging": true
    },
    {
      "key": "ssf1",
      "name": "Carcinoembryonic Antigen (CEA)",
      "naaccr_item": 2880,
      "default": "999",
      "table": "ssf1_jpf",
      "used_for_staging": false,
      "metadata": [
        "COC_REQUIRED",
        "CCCR_REQUIRED",
        "SEER_REQUIRED"
      ]
    },
    {
      "key": "ssf3",
      "name": "Carcinoembryonic Antigen (CEA) Lab Value",
      "naaccr_item": 2900,
      "default": "988",
      "table": "ssf3_lpe",
      "used_for_staging": false,
      "metadata": [
        "COC_REQUIRED",
        "CCCR_REQUIRED"
      ]
    },
    {
      "key": "ssf4",
      "name": "Tumor Deposits",
      "naaccr_item": 2910,
      "default": "988",
      "table": "ssf4_mpb",
      "used_for_staging": false
    },
    {
      "key": "ssf7",
      "name": "Microsatellite Instability (MSI)",
      "naaccr_item": 2861,
      "default": "988",
      "table": "ssf7_spf",
      "used_for_staging": false
    },
    {
      "key": "ssf10",
      "name": "18q Loss of Heterozygosity (LOH)",
      "naaccr_item": 2864,
      "default": "988",
      "table": "ssf10_spi",
      "used_for_staging": false
    },
    {
      "key": "ssf11",
      "name": "Histopathologic Grading",
      "naaccr_item": 2865,
      "default": "999",
      "table": "ssf11_sbt",
      "used_for_staging": true
    },
    {
      "key": "ssf12",
      "name": "Carbohydrate Antigen 19-9 (CA 19-9) Lab Value",
      "naaccr_item": 2866,
      "default": "988",
      "table": "ssf12_sbu",
      "used_for_staging": false
    },
    {
      "key": "clin_stage_group_direct",
      "name": "TNM Clin Stage Group",
      "naaccr_item": 970,
      "default": "99",
      "table": "stage_group_c_37137",
      "used_for_staging": true,
      "metadata": [
        "NPCR_REQUIRED",
        "COC_REQUIRED"
      ]
    },
    {
      "key": "path_stage_group_direct",
      "name": "TNM Path Stage Group",
      "naaccr_item": 910,
      "default": "99",
      "table": "stage_group_p_96481",
      "used_for_staging": true,
      "metadata": [
        "NPCR_REQUIRED",
        "COC_REQUIRED"
      ]
    }
  ],
  "outputs": [
    {
      "key": "derived_version",
      "name": "Derived Version",
      "default": "{{ctx_alg_version}}"
    },
    {
      "key": "clin_stage_group",
      "name": "Derived SEER Clin Stage Group",
      "naaccr_item": 3610,
      "default": "88"
    },
    {
      "key": "path_stage_group",
      "name": "Derived SEER Path Stage Group",
      "naaccr_item": 3605,
      "default": "88"
    },
    {
      "key": "combined_stage_group",
      "name": "Derived SEER Combined Stage Group",
      "naaccr_item": 3614,
      "default": "88"
    },
    {
      "key": "combined_t",
      "name": "Derived SEER Combined T",
      "naaccr_item": 3616,
      "default": "88"
    },
    {
      "key": "combined_n",
      "name": "Derived SEER Combined N",
      "naaccr_item": 3618,
      "default": "88"
    },
    {
      "key": "combined_m",
      "name": "Derived SEER Combined M",
      "naaccr_item": 3620,
      "default": "88"
    },
    {
      "key": "source_t",
      "name": "Derived SEER Combined T Source",
      "naaccr_item": 3622
    },
    {
      "key": "source_n",
      "name": "Derived SEER Combined N Source",
      "naaccr_item": 3624
    },
    {
      "key": "source_m",
      "name": "Derived SEER Combined M Source",
      "naaccr_item": 3626
    }
  ],
  "mappings": [
    {
      "id": "tnm7_stage",
      "name": "TNM 7 Stage",
      "inclusion_tables": [
        {
          "id": "tnm7_inclusions_tpc",
          "inputs": [
            "hist"
          ]
        }
      ],
      "initial_context": [
        {
          "key": "clin_stage_group",
          "value": "90"
        },
        {
          "key": "path_stage_group",
          "value": "90"
        }
      ],
      "tables": [
        {
          "id": "parse_t_2177",
          "input_mapping": [
            {
              "from": "clin_t",
              "to": "t"
            }
          ],
          "output_mapping": [
            {
              "from": "root_t",
              "to": "tmp_clin_t"
            },
            {
              "from": "t_prefix",
              "to": "clin_t_prefix"
            }
          ],
          "inputs": [
            "clin_t"
          ],
          "outputs": [
            "clin_t_prefix",
            "tmp_clin_t"
          ]
        },
        {
          "id": "parse_n_67182",
          "input_mapping": [
            {
              "from": "clin_n",
              "to": "n"
            }
          ],
          "output_mapping": [
            {
              "from": "root_n",
              "to": "tmp_clin_n"
            },
            {
              "from": "n_prefix",
              "to": "clin_n_prefix"
            }
          ],
          "inputs": [
            "clin_n"
          ],
          "outputs": [
            "clin_n_prefix",
            "tmp_clin_n"
          ]
        },
        {
          "id": "parse_m_47057",
          "input_mapping": [
            {
              "from": "clin_m",
              "to": "m"
            }
          ],
          "output_mapping": [
            {
              "from": "m_prefix",
              "to": "clin_m_prefix"
            },
            {
              "from": "root_m",
              "to": "tmp_clin_m"
            }
          ],
          "inputs": [
            "clin_m"
          ],
          "outputs": [
            "tmp_clin_m",
            "clin_m_prefix"
          ]
        },
        {
          "id": "parse_t_2177",
          "input_mapping": [
            {
              "from": "path_t",
              "to": "t"
            }
          ],
          "output_mapping": [
            {
              "from": "root_t",
              "to": "tmp_path_t"
            },
            {
              "from": "t_prefix",
              "to": "path_t_prefix"
            }
          ],
          "inputs": [
            "path_t"
          ],
          "outputs": [
            "tmp_path_t",
            "path_t_prefix"
          ]
        },
        {
          "id": "parse_n_67182",
          "input_mapping": [
            {
              "from": "path_n",
              "to": "n"
            }
          ],
          "output_mapping": [
            {
              "from": "root_n",
              "to": "tmp_path_n"
            },
            {
              "from": "n_prefix",
              "to": "path_n_prefix"
            }
          ],
          "inputs": [
            "path_n"
          ],
          "outputs": [
            "tmp_path_n",
            "path_n_prefix"
          ]
        },
        {
          "id": "parse_m_47057",
          "input_mapping": [
            {
              "from": "path_m",
              "to": "m"
            }
          ],
          "output_mapping": [
            {
              "from": "root_m",
              "to": "tmp_path_m"
            },
            {
              "from": "m_prefix",
              "to": "path_m_prefix"
            }
          ],
          "inputs": [
            "path_m"
          ],
          "outputs": [
            "tmp_path_m",
            "path_m_prefix"
          ]
        },
        {
          "id": "determine_default_t",
          "input_mapping": [
            {
              "from": "tmp_path_t",
              "to": "path_t_in"
            },
            {
              "from": "tmp_clin_t",
              "to": "clin_t_in"
            }
          ],
          "output_mapping": [
            {
              "from": "source_t_out",
              "to": "source_t"
            },
            {
              "from": "path_t_out",
              "to": "tmp_path_t"
            },
            {
              "from": "clin_t_out",
              "to": "tmp_clin_t"
            },
            {
              "from": "combined_t_out",
              "to": "tmp_combined_t"
            }
          ],
          "inputs": [
            "tmp_path_t",
            "tmp_clin_t"
          ],
          "outputs": [
            "source_t",
            "tmp_path_t",
            "tmp_clin_t",
            "tmp_combined_t"
          ]
        },
        {
          "id": "determine_default_n",
          "input_mapping": [
            {
              "from": "tmp_path_n",
              "to": "path_n_in"
            },
            {
              "from": "tmp_clin_n",
              "to": "clin_n_in"
            }
          ],
          "output_mapping": [
            {
              "from": "path_n_out",
              "to": "tmp_path_n"
            },
            {
              "from": "source_n_out",
              "to": "source_n"
            },
            {
              "from": "combined_n_out",
              "to": "tmp_combined_n"
            },
            {
              "from": "clin_n_out",
              "to": "tmp_clin_n"
            }
          ],
          "inputs": [
            "tmp_clin_n",
            "tmp_path_n"
          ],
          "outputs": [
            "tmp_combined_n",
            "tmp_clin_n",
            "tmp_path_n",
            "source_n"
          ]
        },
        {
          "id": "determine_default_m",
          "input_mapping": [
            {
              "from": "tmp_path_m",
              "to": "path_m_in"
            },
            {
              "from": "tmp_clin_m",
              "to": "clin_m_in"
            }
          ],
          "output_mapping": [
            {
              "from": "source_m_out",
              "to": "source_m"
            },
            {
              "from": "combined_m_out",
              "to": "tmp_combined_m"
            },
            {
              "from": "clin_m_out",
              "to": "tmp_clin_m"
            },
            {
              "from": "path_m_out",
              "to": "tmp_path_m"
            }
          ],
          "inputs": [
            "tmp_path_m",
            "tmp_clin_m"
          ],
          "outputs": [
            "tmp_path_m",
            "tmp_combined_m",
            "tmp_clin_m",
            "source_m"
          ]
        },
        {
          "id": "appendix_grade_category_calculation",
          "inputs": [
            "ssf11"
          ],
          "outputs": [
            "c"
          ]
        },
        {
          "id": "tnm7_stage_uar",
          "input_mapping": [
            {
              "from": "tmp_clin_n",
              "to": "n"
            },
            {
              "from": "tmp_clin_m",
              "to": "m"
            },
            {
              "from": "tmp_clin_t",
              "to": "t"
            }
          ],
          "output_mapping": [
            {
              "from": "stage",
              "to": "clin_stage_group"
            }
          ],
          "inputs": [
            "c",
            "tmp_clin_n",
            "tmp_clin_m",
            "tmp_clin_t"
          ],
          "outputs": [
            "clin_stage_group"
          ]
        },
        {
          "id": "tnm7_path_stage_uar",
          "input_mapping": [
            {
              "from": "tmp_path_m",
              "to": "m"
            },
            {
              "from": "tmp_path_n",
              "to": "n"
            },
            {
              "from": "tmp_path_t",
              "to": "t"
            }
          ],
          "output_mapping": [
            {
              "from": "stage",
              "to": "path_stage_group"
            }
          ],
          "inputs": [
            "tmp_path_m",
            "c",
            "tmp_path_n",
            "tmp_path_t"
          ],
          "outputs": [
            "path_stage_group"
          ]
        },
        {
          "id": "adjustments_for_no_clin_or_no_path_26261",
          "output_mapping": [
            {
              "from": "source_t_out",
              "to": "source_t"
            },
            {
              "from": "source_m_out",
              "to": "source_m"
            },
            {
              "from": "combined_m_out",
              "to": "tmp_combined_m"
            },
            {
              "from": "source_n_out",
              "to": "source_n"
            },
            {
              "from": "combined_t_out",
              "to": "tmp_combined_t"
            },
            {
              "from": "combined_n_out",
              "to": "tmp_combined_n"
            }
          ],
          "inputs": [
            "tmp_path_t",
            "clin_n",
            "clin_m",
            "clin_t",
            "path_t",
            "tmp_path_m",
            "tmp_clin_n",
            "tmp_clin_m",
            "clin_stage_group_direct",
            "tmp_path_n",
            "path_m",
            "tmp_clin_t",
            "path_stage_group_direct",
            "path_n"
          ],
          "outputs": [
            "tmp_combined_n",
            "tmp_combined_m",
            "source_t",
            "clin_stage_group",
            "path_stage_group",
            "source_n",
            "tmp_combined_t",
            "source_m"
          ]
        }
      ]
    },
    {
      "id": "combined_stage",
      "name": "Combined Stage",
      "inclusion_tables": [
        {
          "id": "tnm7_inclusions_tpc",
          "inputs": [
            "hist"
          ]
        }
      ],
      "initial_context": [
        {
          "key": "combined_m",
          "value": "90"
        },
        {
          "key": "combined_n",
          "value": "90"
        },
        {
          "key": "combined_stage_group",
          "value": "90"
        },
        {
          "key": "combined_t",
          "value": "90"
        }
      ],
      "tables": [
        {
          "id": "stop_if_no_clin_and_no_path_24035",
          "inputs": [
            "clin_t",
            "path_t",
            "clin_stage_group_direct",
            "path_m",
            "clin_n",
            "path_stage_group_direct",
            "clin_m",
            "path_n"
          ],
          "outputs": [
            "combined_m",
            "combined_n",
            "source_t",
            "tmp_continue",
            "combined_t",
            "combined_stage_group",
            "source_n",
            "source_m"
          ]
        },
        {
          "id": "combined_t",
          "input_mapping": [
            {
              "from": "tmp_path_t",
              "to": "path_t_in"
            },
            {
              "from": "tmp_combined_t",
              "to": "combined_t_in"
            },
            {
              "from": "tmp_clin_t",
              "to": "clin_t_in"
            }
          ],
          "output_mapping": [
            {
              "from": "source_t_out",
              "to": "source_t"
            },
            {
              "from": "combined_t_out",
              "to": "tmp_combined_t"
            }
          ],
          "inputs": [
            "radiation_surg_seq",
            "tmp_path_t",
            "tmp_clin_t",
            "behavior",
            "systemic_surg_seq",
            "tmp_combined_t"
          ],
          "outputs": [
            "source_t",
            "tmp_combined_t"
          ]
        },
        {
          "id": "combined_n_for_tis_cancers_4947",
          "input_mapping": [
            {
              "from": "tmp_path_n",
              "to": "path_n_in"
            },
            {
              "from": "tmp_combined_n",
              "to": "combined_n_in"
            },
            {
              "from": "tmp_clin_n",
              "to": "clin_n_in"
            }
          ],
          "output_mapping": [
            {
              "from": "source_n_out",
              "to": "source_n"
            },
            {
              "from": "combined_n_out",
              "to": "tmp_combined_n"
            }
          ],
          "inputs": [
            "nodes_pos",
            "tmp_combined_n",
            "tmp_clin_n",
            "radiation_surg_seq",
            "tmp_path_n",
            "systemic_surg_seq"
          ],
          "outputs": [
            "tmp_combined_n",
            "source_n"
          ]
        },
        {
          "id": "combined_m",
          "input_mapping": [
            {
              "from": "tmp_combined_m",
              "to": "combined_m_in"
            },
            {
              "from": "tmp_path_m",
              "to": "path_m_in"
            },
            {
              "from": "tmp_clin_m",
              "to": "clin_m_in"
            }
          ],
          "output_mapping": [
            {
              "from": "source_m_out",
              "to": "source_m"
            },
            {
              "from": "combined_m_out",
              "to": "tmp_combined_m"
            }
          ],
          "inputs": [
            "tmp_path_m",
            "tmp_combined_m",
            "tmp_clin_m"
          ],
          "outputs": [
            "tmp_combined_m",
            "tmp_source_m",
            "source_m"
          ]
        },
        {
          "id": "determine_combined_prefix_91402",
          "input_mapping": [
            {
              "from": "clin_t_prefix",
              "to": "clin_prefix"
            },
            {
              "from": "source_t",
              "to": "cmb_source"
            },
            {
              "from": "path_t_prefix",
              "to": "path_prefix"
            }
          ],
          "output_mapping": [
            {
              "from": "cmb_prefix",
              "to": "cmb_t_prefix"
            }
          ],
          "inputs": [
            "clin_t_prefix",
            "source_t",
            "path_t_prefix"
          ],
          "outputs": [
            "cmb_t_prefix"
          ]
        },
        {
          "id": "determine_combined_prefix_91402",
          "input_mapping": [
            {
              "from": "path_n_prefix",
              "to": "path_prefix"
            },
            {
              "from": "source_n",
              "to": "cmb_source"
            },
            {
              "from": "clin_n_prefix",
              "to": "clin_prefix"
            }
          ],
          "output_mapping": [
            {
              "from": "cmb_prefix",
              "to": "cmb_n_prefix"
            }
          ],
          "inputs": [
            "clin_n_prefix",
            "path_n_prefix",
            "source_n"
          ],
          "outputs": [
            "cmb_n_prefix"
          ]
        },
        {
          "id": "determine_combined_prefix_91402",
          "input_mapping": [
            {
              "from": "tmp_source_m",
              "to": "cmb_source"
            },
            {
              "from": "path_m_prefix",
              "to": "path_prefix"
            },
            {
              "from": "clin_m_prefix",
              "to": "clin_prefix"
            }
          ],
          "output_mapping": [
            {
              "from": "cmb_prefix",
              "to": "cmb_m_prefix"
            }
          ],
          "inputs": [
            "clin_m_prefix",
            "tmp_source_m",
            "path_m_prefix"
          ],
          "outputs": [
            "cmb_m_prefix"
          ]
        },
        {
          "id": "concatenate_t_51262",
          "input_mapping": [
            {
              "from": "tmp_combined_t",
              "to": "root_t"
            },
            {
              "from": "cmb_t_prefix",
              "to": "t_prefix"
            }
          ],
          "output_mapping": [
            {
              "from": "t",
              "to": "combined_t"
            }
          ],
          "inputs": [
            "cmb_t_prefix",
            "tmp_combined_t"
          ],
          "outputs": [
            "combined_t"
          ]
        },
        {
          "id": "concatenate_n_43246",
          "input_mapping": [
            {
              "from": "cmb_n_prefix",
              "to": "n_prefix"
            },
            {
              "from": "tmp_combined_n",
              "to": "root_n"
            }
          ],
          "output_mapping": [
            {
              "from": "n",
              "to": "combined_n"
            }
          ],
          "inputs": [
            "cmb_n_prefix",
            "tmp_combined_n"
          ],
          "outputs": [
            "combined_n"
          ]
        },
        {
          "id": "concatenate_m_40642",
          "input_mapping": [
            {
              "from": "tmp_combined_m",
              "to": "root_m"
            },
            {
              "from": "cmb_m_prefix",
              "to": "m_prefix"
            }
          ],
          "output_mapping": [
            {
              "from": "m",
              "to": "combined_m"
            }
          ],
          "inputs": [
            "cmb_m_prefix",
            "tmp_combined_m"
          ],
          "outputs": [
            "combined_m"
          ]
        },
        {
          "id": "tnm7_path_stage_uar",
          "input_mapping": [
            {
              "from": "tmp_combined_n",
              "to": "n"
            },
            {
              "from": "tmp_combined_m",
              "to": "m"
            },
            {
              "from": "tmp_combined_t",
              "to": "t"
            }
          ],
          "output_mapping": [
            {
              "from": "stage",
              "to": "combined_stage_group"
            }
          ],
          "inputs": [
            "tmp_combined_n",
            "c",
            "tmp_combined_m",
            "tmp_combined_t"
          ],
          "outputs": [
            "combined_stage_group"
          ]
        }
      ]
    }
  ],
  "involved_tables": [
    "path_n_dfc",
    "determine_default_t",
    "radiation_surg_seq",
    "ssf12_sbu",
    "determine_default_m",
    "appendix_grade_category_calculation",
    "nodes_pos_fpa",
    "parse_t_2177",
    "concatenate_n_43246",
    "ssf7_spf",
    "ssf1_jpf",
    "parse_n_67182",
    "determine_default_n",
    "stage_group_p_96481",
    "ssf3_lpe",
    "histology",
    "tnm7_path_stage_uar",
    "concatenate_m_40642",
    "tnm7_inclusions_tpc",
    "behavior",
    "ssf10_spi",
    "clin_t_appendix_24847",
    "tnm7_stage_uar",
    "concatenate_t_51262",
    "clin_m_hcf",
    "adjustments_for_no_clin_or_no_path_26261",
    "ssf4_mpb",
    "determine_combined_prefix_91402",
    "stop_if_no_clin_and_no_path_24035",
    "systemic_surg_seq",
    "combined_n_for_tis_cancers_4947",
    "schema_selection_appendix",
    "parse_m_47057",
    "ssf11_sbt",
    "primary_site",
    "combined_m",
    "path_m_hcf",
    "year_dx_validation",
    "path_t_appendix_94760",
    "clin_n_dfc",
    "combined_t",
    "stage_group_c_37137"
  ],
  "on_invalid_input": "FAIL_WHEN_USED_FOR_STAGING",
  "last_modified": "2018-02-05T18:40:34.767Z"
}




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