algorithms.eod_public.1.1.schemas.brain.json Maven / Gradle / Ivy
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A cancer staging client library
{
"id" : "brain",
"algorithm" : "eod_public",
"version" : "1.1",
"name" : "Brain",
"title" : "Brain and Cerebral Meninges",
"notes" : "8000-8700, 8720-8790, 8802, 8810, 8815, 8850, 8890, 8900, 9064, 9070-9071, 9080, 9084-9085, 9100-9105, 9120, 9133, 9140, 9180, 9220, 9362, 9364, 9382, 9385-9401, 9411, 9424-9430, 9440-9442, 9445, 9450-9451, 9470-9471, 9473-9478, 9490, 9500-9501, 9505, 9508, 9530, 9538, 9540, 9680, 9699, 9700-9714, 9751-9759 \n\nC700 Cerebral meninges \nC710 Cerebrum \nC711 Frontal lobe \nC712 Temporal lobe \nC713 Parietal lobe \nC714 Occipital lobe \nC715 Ventricle, NOS\nC716 Cerebellum, NOS\nC717 Brain stem\nC718 Overlapping lesion of brain\nC719 Brain, NOS\n\n**Note 1:** The following sources were used in the development of this schema\n* SEER Extent of Disease 1988: Codes and Coding Instructions (3rd Edition, 1998) (https://seer.cancer.gov/archive/manuals/EOD10Dig.3rd.pdf)\n* SEER Summary Staging Manual-2000: Codes and Coding Instructions (https://seer.cancer.gov/tools/ssm/)\n* Collaborative Stage Data Collection System, version 02.05: https://cancerstaging.org/cstage/Pages/default.aspx \n* Chapter 72 *Brain and Spinal Cord*, in the AJCC Cancer Staging Manual, Eighth Edition (2017) published by Springer International Publishing. Used with permission of the American College of Surgeons, Chicago, Illinois.\n\n**Note 2:** See the following schemas for the listed histologies \n* 8710-8714, 8800-8801, 8803-8806, 8811-8814, 8820-8842, 8851-8881, 8891-8898, 8901-8934, 8940-9063, 9065, 9072-9073, 9081-9083, 9086-9091, 9110, 9121-9132, 9135-9137, 9141-9175, 9181-9210, 9221-9361, 9363, 9365-9381, 9383-9384, 9410, 9412-9423, 9431-9432, 9444, 9460, 9472, 9480, 9491-9493, 9502-9504, 9506-9507, 9509-9523, 9531-9537, 9539, 9541-9582: *Soft Tissue Other*\n* 8935-8936: *GIST*\n\n**Note 3:** Summary Stage is the only applicable staging system for this site/histology/schema.",
"schema_selection_table" : "schema_selection_brain",
"inputs" : [ {
"key" : "year_dx",
"name" : "Year of Diagnosis",
"naaccr_item" : 390,
"table" : "year_dx_validation",
"used_for_staging" : false
}, {
"key" : "site",
"name" : "Primary Site",
"naaccr_item" : 400,
"table" : "primary_site",
"used_for_staging" : true
}, {
"key" : "hist",
"name" : "Histology",
"naaccr_item" : 522,
"table" : "histology",
"used_for_staging" : true
}, {
"key" : "behavior",
"name" : "Behavior",
"naaccr_item" : 523,
"table" : "behavior",
"used_for_staging" : true
}, {
"key" : "size_clin",
"name" : "Tumor Size Clinical",
"naaccr_item" : 752,
"table" : "tumor_size_clinical_60979",
"used_for_staging" : false
}, {
"key" : "size_path",
"name" : "Tumor Size Pathological",
"naaccr_item" : 754,
"table" : "tumor_size_pathological_25597",
"used_for_staging" : false
}, {
"key" : "size_summary",
"name" : "Tumor Size Summary",
"naaccr_item" : 756,
"default" : "999",
"table" : "tumor_size_summary_63115",
"used_for_staging" : false
}, {
"key" : "nodes_pos",
"name" : "Regional Nodes Positive",
"naaccr_item" : 820,
"default" : "99",
"table" : "nodes_pos_dna_91511",
"used_for_staging" : false
}, {
"key" : "nodes_exam",
"name" : "Regional Nodes Examined",
"naaccr_item" : 830,
"default" : "99",
"table" : "nodes_exam_dna_95635",
"used_for_staging" : false
}, {
"key" : "eod_primary_tumor",
"name" : "EOD Primary Tumor",
"naaccr_item" : 772,
"default" : "999",
"table" : "extension_bcc",
"used_for_staging" : true
}, {
"key" : "eod_regional_nodes",
"name" : "EOD Regional Nodes",
"naaccr_item" : 774,
"default" : "888",
"table" : "nodes_dna",
"used_for_staging" : true
}, {
"key" : "eod_mets",
"name" : "EOD Mets",
"naaccr_item" : 776,
"default" : "00",
"table" : "mets_haw",
"used_for_staging" : true
}, {
"key" : "ss2018",
"name" : "SS2018",
"naaccr_item" : 764,
"table" : "ss2018_brain_67865",
"used_for_staging" : false,
"metadata" : [ "CCCR_REQUIRED" ]
}, {
"key" : "grade_clin",
"name" : "Grade Clinical",
"naaccr_item" : 3843,
"default" : "9",
"table" : "grade_clinical_19997",
"used_for_staging" : false,
"metadata" : [ "COC_REQUIRED", "NPCR_REQUIRED", "SSDI", "CCCR_REQUIRED", "SEER_REQUIRED" ]
}, {
"key" : "grade_path",
"name" : "Grade Pathological",
"naaccr_item" : 3844,
"default" : "9",
"table" : "grade_pathological_11803",
"used_for_staging" : false,
"metadata" : [ "COC_REQUIRED", "NPCR_REQUIRED", "SSDI", "CCCR_REQUIRED", "SEER_REQUIRED" ]
}, {
"key" : "grade_post_therapy",
"name" : "Grade Post Therapy",
"naaccr_item" : 3845,
"table" : "grade_post_therapy_98283",
"used_for_staging" : false,
"metadata" : [ "COC_REQUIRED", "NPCR_REQUIRED", "SSDI", "CCCR_REQUIRED", "SEER_REQUIRED" ]
}, {
"key" : "brain_molecular_markers",
"name" : "Brain Molecular Markers",
"naaccr_item" : 3816,
"default" : "88",
"table" : "brain_molecular_markers_75370",
"used_for_staging" : false,
"metadata" : [ "NPCR_REQUIRED", "SSDI", "SEER_REQUIRED" ]
}, {
"key" : "chrom_1p_status",
"name" : "Chromosome 1p Status",
"naaccr_item" : 3801,
"default" : "8",
"table" : "chromosome_1p_status_40269",
"used_for_staging" : false,
"metadata" : [ "COC_REQUIRED", "SSDI", "SEER_REQUIRED" ]
}, {
"key" : "chrom_19q_status",
"name" : "Chromosome 19q Status",
"naaccr_item" : 3802,
"default" : "8",
"table" : "chromosome_19q_status_72683",
"used_for_staging" : false,
"metadata" : [ "COC_REQUIRED", "SSDI", "SEER_REQUIRED" ]
}, {
"key" : "mgmt",
"name" : "MGMT",
"naaccr_item" : 3889,
"default" : "8",
"table" : "mgmt_17454",
"used_for_staging" : false,
"metadata" : [ "COC_REQUIRED", "SSDI", "SEER_REQUIRED" ]
} ],
"outputs" : [ {
"key" : "naaccr_schema_id",
"name" : "Schema ID",
"naaccr_item" : 3800,
"default" : "00721"
}, {
"key" : "ajcc_id",
"name" : "AJCC ID",
"naaccr_item" : 995,
"default" : "XX"
}, {
"key" : "derived_version",
"name" : "Derived Version",
"default" : "{{ctx_alg_version}}"
}, {
"key" : "eod_2018_t",
"name" : "Derived EOD 2018 T",
"naaccr_item" : 785,
"default" : "88"
}, {
"key" : "eod_2018_n",
"name" : "Derived EOD 2018 N",
"naaccr_item" : 815,
"default" : "88"
}, {
"key" : "eod_2018_m",
"name" : "Derived EOD 2018 M",
"naaccr_item" : 795,
"default" : "88"
}, {
"key" : "eod_2018_stage_group",
"name" : "Derived EOD 2018 Stage Group",
"naaccr_item" : 818,
"default" : "88"
}, {
"key" : "ss2018_derived",
"name" : "Derived Summary Stage 2018",
"naaccr_item" : 762,
"default" : "9"
} ],
"mappings" : [ {
"id" : "ajcc_chapter_calculation",
"name" : "AJCC Chapter Calculation",
"tables" : [ {
"id" : "ajcc_chapter_calculation_72713",
"inputs" : [ "hist", "behavior" ],
"outputs" : [ "ajcc_id" ]
} ]
}, {
"id" : "summary_stage_2018",
"name" : "Summary Stage 2018",
"tables" : [ {
"id" : "extension_bcc",
"inputs" : [ "eod_primary_tumor" ],
"outputs" : [ "eod_2018_t", "ss2018_t" ]
}, {
"id" : "nodes_dna",
"inputs" : [ "eod_regional_nodes" ],
"outputs" : [ "eod_2018_n", "ss2018_n" ]
}, {
"id" : "mets_haw",
"inputs" : [ "eod_mets" ],
"outputs" : [ "eod_2018_m", "ss2018_m" ]
}, {
"id" : "summary_stage_benign_3306",
"inputs" : [ "ss2018_m", "ss2018_n", "ss2018_t" ],
"outputs" : [ "ss2018_derived" ]
} ]
} ],
"involved_tables" : [ "grade_post_therapy_98283", "mgmt_17454", "summary_stage_benign_3306", "ajcc_chapter_calculation_72713", "tumor_size_pathological_25597", "chromosome_1p_status_40269", "tumor_size_clinical_60979", "nodes_exam_dna_95635", "grade_pathological_11803", "schema_selection_brain", "extension_bcc", "primary_site", "histology", "chromosome_19q_status_72683", "year_dx_validation", "brain_molecular_markers_75370", "ss2018_brain_67865", "tumor_size_summary_63115", "behavior", "grade_clinical_19997", "nodes_dna", "mets_haw", "nodes_pos_dna_91511" ],
"on_invalid_input" : "CONTINUE",
"last_modified" : "2018-04-19T21:52:47.317Z"
}