algorithms.eod_public.1.1.schemas.lymphoma_cll_sll.json Maven / Gradle / Ivy
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A cancer staging client library
{
"id" : "lymphoma_cll_sll",
"algorithm" : "eod_public",
"version" : "1.1",
"name" : "Lymphoma-CLL/SLL",
"title" : "Lymphoma-CLL/SLL",
"notes" : "9823 (EXCEPT C441, C690, C695-C696)\n\n**Note 1:** The following sources were used in the development of this schema\n* SEER Extent of Disease 1988: Codes and Coding Instructions (3rd Edition, 1998) (https://seer.cancer.gov/archive/manuals/EOD10Dig.3rd.pdf)\n* SEER Summary Staging Manual-2000: Codes and Coding Instructions (https://seer.cancer.gov/tools/ssm/)\n* Collaborative Stage Data Collection System, version 02.05: https://cancerstaging.org/cstage/Pages/default.aspx \n* Chapter 79 *Hodgkin and Non-Hodgkin Lymphomas*, in the AJCC Cancer Staging Manual, Eighth Edition (2017) published by Springer International Publishing. Used with permission of the American College of Surgeons, Chicago, Illinois.\n* Chapter 80 *Pediatric Hodgkin and Non-Hodgkin Lymphomas*, in the AJCC Cancer Staging Manual, Eighth Edition (2017) published by Springer International Publishing. Used with permission of the American College of Surgeons, Chicago, Illinois.\n\n**Note 2:** See the following schema for the listed primary sites\n* C441, C690, C695-C696 (9823): *Lymphoma Ocular Adnexa*\n\n**Note 3:** Chronic lymphocytic leukemia/Chronic lymphocytic lymphoma (CLL/SLL) is always coded as a lymphoma.\n\n**Note 4:** The Cotswold modification of the Ann Arbor staging system (used in AJCC 6th and 7th editions) has been updated to the *Lugano classification*. The *Lugano classification* includes an E suffix for lymphoma with either localized extralymphatic presentations (Stage IE) or by contiguous spread from nodal disease (Stage IIE). A change from the Cotswold modification of the Ann Arbor Staging System, E lesions do not apply to patients with Stage III nodal disease; or any patient with nodal disease above and below the diaphragm with concurrent contiguous extralymphatic involvement (Stage IV), which was previously Stage IIIE.\n\n**Note 5:** In addition to coding EOD Primary Tumor, the following data items are also needed to assign a stage group for CLL/SLL.\n* Adenopathy\n* Anemia\n* Lymphocytosis\n* Organomegaly\n* Thrombocytopenia",
"schema_selection_table" : "schema_selection_chronic_lymphocytic_leukemia_small_lymphocytic_lymphoma_cll_sll",
"inputs" : [ {
"key" : "year_dx",
"name" : "Year of Diagnosis",
"naaccr_item" : 390,
"table" : "year_dx_validation",
"used_for_staging" : false
}, {
"key" : "site",
"name" : "Primary Site",
"naaccr_item" : 400,
"table" : "primary_site",
"used_for_staging" : true
}, {
"key" : "hist",
"name" : "Histology",
"naaccr_item" : 522,
"table" : "histology",
"used_for_staging" : true
}, {
"key" : "size_clin",
"name" : "Tumor Size Clinical",
"naaccr_item" : 752,
"table" : "tumor_size_clinical_60979",
"used_for_staging" : false
}, {
"key" : "size_path",
"name" : "Tumor Size Pathological",
"naaccr_item" : 754,
"table" : "tumor_size_pathological_25597",
"used_for_staging" : false
}, {
"key" : "size_summary",
"name" : "Tumor Size Summary",
"naaccr_item" : 756,
"default" : "999",
"table" : "tumor_size_summary_63115",
"used_for_staging" : false
}, {
"key" : "nodes_pos",
"name" : "Regional Nodes Positive",
"naaccr_item" : 820,
"default" : "99",
"table" : "nodes_pos_dna_91511",
"used_for_staging" : false
}, {
"key" : "nodes_exam",
"name" : "Regional Nodes Examined",
"naaccr_item" : 830,
"default" : "99",
"table" : "nodes_exam_dna_95635",
"used_for_staging" : false
}, {
"key" : "eod_primary_tumor",
"name" : "EOD Primary Tumor",
"naaccr_item" : 772,
"default" : "999",
"table" : "seer_primary_tumor_79817",
"used_for_staging" : true
}, {
"key" : "eod_regional_nodes",
"name" : "EOD Regional Nodes",
"naaccr_item" : 774,
"default" : "888",
"table" : "nodes_dna",
"used_for_staging" : true
}, {
"key" : "eod_mets",
"name" : "EOD Mets",
"naaccr_item" : 776,
"default" : "88",
"table" : "mets_hna",
"used_for_staging" : true
}, {
"key" : "ss2018",
"name" : "SS2018",
"naaccr_item" : 764,
"table" : "ss2018_lymphoma_27031",
"used_for_staging" : false
}, {
"key" : "grade_clin",
"name" : "Grade Clinical",
"naaccr_item" : 3843,
"default" : "8",
"table" : "grade_clinical_18316",
"used_for_staging" : false,
"metadata" : [ "NPCR_REQUIRED", "COC_REQUIRED", "SSDI", "CCCR_REQUIRED", "SEER_REQUIRED" ]
}, {
"key" : "grade_path",
"name" : "Grade Pathological",
"naaccr_item" : 3844,
"default" : "8",
"table" : "grade_pathological_73388",
"used_for_staging" : false,
"metadata" : [ "COC_REQUIRED", "NPCR_REQUIRED", "SSDI", "CCCR_REQUIRED", "SEER_REQUIRED" ]
}, {
"key" : "grade_post_therapy",
"name" : "Grade Post Therapy",
"naaccr_item" : 3845,
"table" : "grade_post_therapy_72642",
"used_for_staging" : false,
"metadata" : [ "COC_REQUIRED", "NPCR_REQUIRED", "SSDI", "CCCR_REQUIRED", "SEER_REQUIRED" ]
}, {
"key" : "b_symptoms",
"name" : "B Symptoms",
"naaccr_item" : 3812,
"default" : "8",
"table" : "systemic_symptoms_at_dx_60639",
"used_for_staging" : false,
"metadata" : [ "NPCR_REQUIRED", "COC_REQUIRED", "SSDI", "CCCR_REQUIRED", "SEER_REQUIRED" ]
}, {
"key" : "hiv",
"name" : "HIV Status",
"naaccr_item" : 3859,
"default" : "8",
"table" : "hiv_status_12569",
"used_for_staging" : false,
"metadata" : [ "COC_REQUIRED", "SSDI", "SEER_REQUIRED" ]
}, {
"key" : "intern_prog_index",
"name" : "Intern Prognostic Index",
"naaccr_item" : 3896,
"default" : "X8",
"table" : "intern_prognostic_index_90310",
"used_for_staging" : false,
"metadata" : [ "COC_REQUIRED", "SSDI", "SEER_REQUIRED" ]
}, {
"key" : "adenopathy",
"name" : "Adenopathy",
"naaccr_item" : 3804,
"default" : "9",
"table" : "adenopathy_40816",
"used_for_staging" : false,
"metadata" : [ "COC_REQUIRED", "NPCR_REQUIRED", "SSDI", "CCCR_REQUIRED", "SEER_REQUIRED" ]
}, {
"key" : "organomegaly",
"name" : "Organomegaly",
"naaccr_item" : 3907,
"default" : "9",
"table" : "organomegaly_16131",
"used_for_staging" : false,
"metadata" : [ "COC_REQUIRED", "NPCR_REQUIRED", "SSDI", "CCCR_REQUIRED", "SEER_REQUIRED" ]
}, {
"key" : "anemia",
"name" : "Anemia",
"naaccr_item" : 3811,
"default" : "9",
"table" : "anemia_15893",
"used_for_staging" : false,
"metadata" : [ "NPCR_REQUIRED", "COC_REQUIRED", "SSDI", "CCCR_REQUIRED", "SEER_REQUIRED" ]
}, {
"key" : "lymphocytosis",
"name" : "Lymphocytosis",
"naaccr_item" : 3885,
"default" : "9",
"table" : "lymphocytosis_79150",
"used_for_staging" : false,
"metadata" : [ "COC_REQUIRED", "NPCR_REQUIRED", "SSDI", "CCCR_REQUIRED", "SEER_REQUIRED" ]
}, {
"key" : "thrombocytopenia",
"name" : "Thrombocytopenia",
"naaccr_item" : 3933,
"default" : "9",
"table" : "thrombocytopenia_8479",
"used_for_staging" : false,
"metadata" : [ "COC_REQUIRED", "NPCR_REQUIRED", "SSDI", "CCCR_REQUIRED", "SEER_REQUIRED" ]
} ],
"outputs" : [ {
"key" : "naaccr_schema_id",
"name" : "Schema ID",
"naaccr_item" : 3800,
"default" : "00795"
}, {
"key" : "ajcc_id",
"name" : "AJCC ID",
"naaccr_item" : 995,
"default" : "XX"
}, {
"key" : "derived_version",
"name" : "Derived Version",
"default" : "{{ctx_alg_version}}"
}, {
"key" : "eod_2018_t",
"name" : "Derived EOD 2018 T",
"naaccr_item" : 785,
"default" : "88"
}, {
"key" : "eod_2018_n",
"name" : "Derived EOD 2018 N",
"naaccr_item" : 815,
"default" : "88"
}, {
"key" : "eod_2018_m",
"name" : "Derived EOD 2018 M",
"naaccr_item" : 795,
"default" : "88"
}, {
"key" : "eod_2018_stage_group",
"name" : "Derived EOD 2018 Stage Group",
"naaccr_item" : 818,
"default" : "88"
}, {
"key" : "ss2018_derived",
"name" : "Derived Summary Stage 2018",
"naaccr_item" : 762,
"default" : "9"
} ],
"mappings" : [ {
"id" : "ajcc_chapter_calculation",
"name" : "AJCC Chapter Calculation",
"tables" : [ {
"id" : "ajcc_chapter_calculation_38461",
"inputs" : [ "site" ],
"outputs" : [ "ajcc_id" ]
} ]
}, {
"id" : "summary_stage_2018",
"name" : "Summary Stage 2018",
"initial_context" : [ {
"key" : "eod_2018_stage_group",
"value" : "90"
} ],
"tables" : [ {
"id" : "seer_primary_tumor_79817",
"inputs" : [ "eod_primary_tumor" ],
"outputs" : [ "eod_2018_t", "ss2018_t", "eod_2018_stage_group" ]
}, {
"id" : "nodes_dna",
"inputs" : [ "eod_regional_nodes" ],
"outputs" : [ "eod_2018_n", "ss2018_n" ]
}, {
"id" : "mets_hna",
"inputs" : [ "eod_mets" ],
"outputs" : [ "eod_2018_m", "ss2018_m" ]
}, {
"id" : "summary_stage_lymphoma_25139",
"inputs" : [ "ss2018_m", "ss2018_n", "ss2018_t" ],
"outputs" : [ "ss2018_derived" ]
} ]
}, {
"id" : "eod_2018_stage_group",
"name" : "EOD 2018 Stage Group",
"inclusion_tables" : [ {
"id" : "tnm8_inclusions_80045",
"inputs" : [ "ajcc_id" ]
} ],
"tables" : [ {
"id" : "lymphoma_stage_group_18599",
"input_mapping" : [ {
"from" : "eod_2018_stage_group",
"to" : "stage_group_in"
} ],
"output_mapping" : [ {
"from" : "stage",
"to" : "eod_2018_stage_group"
} ],
"inputs" : [ "eod_2018_stage_group" ],
"outputs" : [ "eod_2018_stage_group" ]
} ]
}, {
"id" : "eod_tnm_cleanup",
"name" : "EOD TNM Cleanup",
"exclusion_tables" : [ {
"id" : "tnm8_inclusions_80045",
"inputs" : [ "ajcc_id" ]
} ],
"tables" : [ {
"id" : "eod_tnm_component_cleanup_58170",
"inputs" : [ "ajcc_id" ],
"outputs" : [ "eod_2018_n", "eod_2018_m", "eod_2018_t", "eod_2018_stage_group" ]
} ]
} ],
"involved_tables" : [ "grade_post_therapy_72642", "thrombocytopenia_8479", "ss2018_lymphoma_27031", "tnm8_inclusions_80045", "lymphocytosis_79150", "hiv_status_12569", "nodes_exam_dna_95635", "histology", "seer_primary_tumor_79817", "intern_prognostic_index_90310", "mets_hna", "tumor_size_summary_63115", "adenopathy_40816", "nodes_dna", "ajcc_chapter_calculation_38461", "tumor_size_pathological_25597", "summary_stage_lymphoma_25139", "anemia_15893", "tumor_size_clinical_60979", "organomegaly_16131", "lymphoma_stage_group_18599", "primary_site", "eod_tnm_component_cleanup_58170", "schema_selection_chronic_lymphocytic_leukemia_small_lymphocytic_lymphoma_cll_sll", "year_dx_validation", "systemic_symptoms_at_dx_60639", "grade_clinical_18316", "grade_pathological_73388", "nodes_pos_dna_91511" ],
"on_invalid_input" : "CONTINUE",
"last_modified" : "2018-04-19T21:52:50.764Z"
}