edits.seer.internal.contexts.AJCC7CodeLookup16.xml Maven / Gradle / Ivy

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Java implemenation of the SEER edits.
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        <entry id="AJCC7CodeLookup16" type="groovy"><![CDATA[return  {line ->

String site = line.primarySite
String hist = line.histologicTypeIcdO3
String ssf25 = line.csSiteSpecificFactor25
String ssf10 = line.csSiteSpecificFactor10
String grade = line.grade
String age = line.ageAtDiagnosis
String sex = line.sex
Integer histNum = (hist == null || hist.length() < 4) ? -1 : Functions.asInt(hist)
Integer siteNum = (site == null || site.length() < 4) ? -1 : Functions.asInt(site.substring(1))

String code = '999'

if (Context.AJCC7SiteHistTable16.containsKey(siteNum) && Context.AJCC7SiteHistTable16[siteNum].containsKey(histNum))
    code = Context.AJCC7SiteHistTable16[siteNum][histNum]

if (Functions.expandList((List)[0..440, 442..689, 691..694, 698..809]).contains(siteNum) && Functions.expandList((List)[9590..9699, 9702..9727, 9735, 9737, 9738]).contains(histNum))
    code = '57A'
else if (Functions.expandList((List)[0..419, 422, 423, *425..440, 442..689, 691..694, 698..809]).contains(siteNum) && Functions.expandList((List)[9811..9818, 9823, 9827, 9837]).contains(histNum))
    code = '57A'
else if (code == '04C') {
    if (ssf25 == '020')
        code = '04D'
    else if (ssf25 != '010')
        code = '999'
}
else if (code == '008') {
    if (grade ==~ /^[1239]$/) {
        if (age <= '044')
            code = '08A'
        else if (age <= '998')
            code = '08B'
        else
            code = '08C'
    }
    else if (grade == '4')
        code = '08F'
    else
        code = '999'
}
else if (code == '08D') {
    if (grade == '4')
        code = '08F'
    else if (!(grade ==~ /^[1239]$/))
        code = '999'
}
else if (code == '011') {
    if ((siteNum == 161 || siteNum == 162) && ssf25 ==~ /^0[246]0$/)
        if (histNum >= 8982 && histNum <= 8990)
            code = '999'
        else
            code = '10B'
}
else if (code == '16B') {
    if ((480 <= siteNum && siteNum <= 488) && ssf10 == '020')
        code = '16A'
}
else if (code == '021') {
    if (siteNum == 240) {
        if (ssf25 == '030')
            code = '020'
        else if (ssf25 == '040' || ssf25 == '070')
            code = '022'
    }
}
else if (code == '37B') {
    if (481 <= siteNum && siteNum <= 488 && sex != '2' && sex != '6')
        code = '999'
}
else if (code == '051') {
    if (siteNum == 693)
        code = '51A'
    else if (siteNum == 694) {
        if (ssf25 == '010')
            code = '51A'
        else if (ssf25 == '020')
            code = '51B'
        else
            code = '999'
    }
}
else if (code == '053') {
    if (ssf25 != '015')
        code = '999'
}

if (code == '999') {
    if (siteNum == 739 && Functions.expandList((List)[*8000..8576, *8940..8950, 8980, 8981]).contains(histNum) && line.grade == '4')
        code = '08F'
    else if (481 <= siteNum && siteNum <= 488 && Functions.expandList((List)[8800..8820, 8823..8934, 8940..9136, 9142..9582]).contains(histNum) && sex != '2' && sex != '6')
        code = '028'
    else if (481 <= siteNum && siteNum <= 488 && Functions.expandList((List)[8800..8820, 8823..8921, 9120..9136, 9142..9582]).contains(histNum) && (sex == '2' || sex == '6'))
        code = '028'
}

return code }]]></entry>