edits.seer.internal.rules.IF119.xml Maven / Gradle / Ivy
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Java implemenation of the SEER edits.
<rule id="IF119" name="Age, Primary Site, Morph ICDO3--Pediatric (NPCR)" tag="N0717" java-path="lines.line" category="inter-field" depends="Age_at_Diagnosis,Behavior_Code_ICD-O-3,Histologic_Type_ICD-O-3,Primary_Site,Year_of_Diagnosis">
<expression><![CDATA[Integer ageDx = Functions.asInt(line.ageAtDiagnosis)
Integer site = Functions.asInt(line.primarySite.substring(1))
Integer hist = Functions.asInt(line.histologicTypeIcdO3)
if (line.dateOfDiagnosisYear == null ||
line.histologicTypeIcdO3 == null || line.behaviorCodeIcdO3 == null ||
line.dateOfDiagnosisYear < '2001' || line.overRideAgeSiteMorph == '1' || line.overRideAgeSiteMorph == '3' ||
ageDx > 14)
return true
/* Hodgkin Lymphoma */
if (ageDx < 3 &&
Functions.between(line.histologicTypeIcdO3,'9650','9667'))
return false
/* Neuroblastoma and ganglioneuroblastoma */
if (ageDx > 9 &&
((line.histologicTypeIcdO3 == '9490') || (line.histologicTypeIcdO3 == '9500')))
return false
/* Retinoblastoma */
if (ageDx > 5 &&
Functions.between(line.histologicTypeIcdO3,'9510','9514'))
return false
/* Wilms tumro, rhabdoid, and clear cell */
if (ageDx > 8 &&
((line.histologicTypeIcdO3 == '8960') || (line.histologicTypeIcdO3 == '8964') ||
((line.histologicTypeIcdO3 == '8963') && ((site == 649) || (site == 809)))))
return false
/* Renal carcinoma */
if (ageDx < 9 &&
((((List)Context.Group_VIb).contains(hist) && (site == 649)) ||
(line.histologicTypeIcdO3 == '8312')))
return false
/* Hepatoblastoma */
if (ageDx > 5 && (line.histologicTypeIcdO3 == '8970'))
return false
/* Hepatic carcinoma */
if (ageDx < 9 &&
((((List)Context.Group_VIIb).contains(hist) &&
((site == 220) || (site == 221))) ||
Functions.between(line.histologicTypeIcdO3,'8160','8180')))
return false
/* Osteosarcoma */
if (ageDx < 6 &&
Functions.between(line.histologicTypeIcdO3,'9180','9200'))
return false
/* Chondrosarcoma */
if (ageDx < 6 &&
(Functions.between(line.histologicTypeIcdO3,'9220','9230') ||
(((line.histologicTypeIcdO3 == '9231') || (line.histologicTypeIcdO3 == '9240')) &&
Functions.between(site,400,419))))
return false
/* Ewing sarcoma */
if (ageDx < 4 &&
(((line.histologicTypeIcdO3 == '9260') &&
(Functions.between(site,400,419) ||
(site == 809))) || (((line.histologicTypeIcdO3 == '9363') ||
(line.histologicTypeIcdO3 == '9364')) && Functions.between(site,400,419))))
return false
/* Non-gonadal germ cell */
if (ageDx > 7 &&
Functions.between(line.histologicTypeIcdO3,'9060','9102') &&
((List)Context.Group_Xb_Site).contains(site))
return false
/* Gonadal carcinoma */
if (ageDx < 15 &&
((((List)Context.Group_Xd_1).contains(hist) &&
((List)Context.Group_Xd_Site_1).contains(site)) ||
((List)Context.Group_Xd_2).contains(hist)))
return false
/* Thyroid carcinoma */
if (ageDx < 6 &&
((((List)Context.Group_XIb).contains(hist) && (site == 739)) ||
Functions.between(line.histologicTypeIcdO3,'8330','8350')))
return false
/* Nasopharyngeal carcinoma */
if (ageDx < 6 && ((List)Context.Group_XIc).contains(hist) &&
Functions.between(site,110,119))
return false
/* Skin carcinoma */
if (ageDx < 5 && ((List)Context.Group_XIe).contains(hist) &&
Functions.between(site,440,449))
return false
/* NOS carcinoma */
if (ageDx < 5 && ((List)Context.Group_XIf).contains(hist) &&
((List)Context.Group_XIf_Site).contains(site))
return false
/* Mesothelial neoplasma (M905) */
if (Functions.between(line.histologicTypeIcdO3,'9050','9053'))
return false
/* Additional SEER Groups */
if ((line.behaviorCodeIcdO3 == '2' && Functions.between(site,530,539))
|| (line.histologicTypeIcdO3 == '9100' && site == 589)
|| Functions.matches(line.primarySite, /^C(15\d|17\d|199|209|21[0-8]|239|24\d|25\d|384|50\d|54\d|559|609)$/)
|| (Functions.matches(line.primarySite, /^C(18\d|339|34\d)$/)
&& !Functions.between(line.histologicTypeIcdO3,'8240','8245'))
|| (Functions.between(site,530,539) && line.behaviorCodeIcdO3 == '3')
|| (site == 619 && line.histologicTypeIcdO3 == '8140')
|| ['9732','9863','9875','9876','9945','9823'].contains(line.histologicTypeIcdO3))
return false
return true]]></expression>
<message>Age, Primary Site, Histology conflict for Pediatric</message>
<description><![CDATA[This edit is skipped if any of the following conditions are true:
1) Histologic Type ICD-O-3[522] is blank
2) Behavior Code ICD-O-3[523] is blank
3) Year of Diagnosis[390] < 2001
4) Year of Diagnosis is blank
5) Age > 14
6) Over-ride age/site/morph[1990] is 1 (review complete) or
3 (Reviewed: Conditions 1 and 2 above both apply)
This edit and the edit Age, Primary Site, Morphology ICDO3--Adult
(SEER) replace the edit Age, Primary Site, Morphology ICDO3 (SEER IF15)
for cases diagnosed on or after 01/01/2001. There is no overlap in the
two edits. This edit (Age, Primary Site, Morphology ICDO3--Pediatric
(NPCR)) is for ages 000 - 014 and the edit Age, Primary Site,
Morphology ICDO3--Adult (SEER) is for ages 015 and older. The field
Over-ride age/site/morph [1990] is shared by both edits and contains a "1"
when the case has been reviewed and accepted as is.
This edit is based on the International Classification of Childhood
Cancer (ICCC) CHILD-CHECK program edit of "Unlikely Combinations of Age
and Tumour Type" as specified on page 11 of IARC Technical Report No.
29. It also includes SEER edits for ages 000 - 014 that were formerly
part of the edit Age, Primary Site, Morphology ICDO3 (SEER IF15).
For each specified group in the following list, the Age/Primary Site/
Morphology combinations require review.
Unlikely Combinations of Age and Tumor Type
ICCC Diagnostic Group: IIa Hodgkin Lymphoma
Histologic Type ICD-O-3 [522]: 9650-9667
Primary Site [400]: Any
Age at Diagnosis [230]: 000 - 002
ICCC Diagnostic Group: IVa Neuroblastoma and ganglioneuroblastoma
Histologic Type ICD-O-3 [522]: 9490, 9500
Primary Site [400]: Any
Age at Diagnosis [230]: 010 - 014
ICCC Diagnostic Group: V Retinoblastoma
Histologic Type ICD-O-3 [522]: 9510-9514
Primary Site [400]: Any
Age at Diagnosis [230]: 006 - 014
ICCC Diagnostic Group: VIa Wilms tumor, rhabdoid, and clear cell
sarcoma
Histologic Type ICD-O-3 [522]: 8960, 8964
Primary Site [400]: Any
Histologic Type ICD-O-3 [522]: 8963
Primary Site [400]: C649, C809
Age at Diagnosis [230]: 009 - 014
ICCC Diagnostic Group: VIb Renal carcinoma
Histologic Type ICD-O-3 [522]: 8010-8041, 8050-8075, 8082, 8120-8122,
8130-8141, 8143, 8155, 8190-8201, 8210, 8211, 8221-8231, 8240,
8241, 8244-8246, 8260-8263, 8290, 8310, 8320, 8323, 8401, 8430,
8440, 8480-8490, 8504, 8510, 8550, 8560-8573
Primary Site [400]: C649
Histologic Type ICD-O-3 [522]: 8312
Primary Site [400]: Any
Age at Diagnosis [230]: 000 - 008
ICCC Diagnostic Group: VIIa Hepatoblastoma
Histologic Type ICD-O-3 [522]: 8970
Primary Site [400]: Any
Age at Diagnosis [230]: 006 - 014
ICCC Diagnostic Group: VIIb Hepatic carcinoma
Histologic Type ICD-O-3 [522]: 8010-8041, 8050-8075, 8082, 8120-8122,
8140, 8141, 8143, 8155, 8190-8201, 8210, 8211, 8230, 8231,
8240, 8241, 8244-8246, 8260-8263, 8310, 8320, 8323, 8401, 8430,
8440, 8480-8490, 8504, 8510, 8550, 8560-8573
Primary Site [400]: C220, C221
Histologic Type ICD-O-3 [522]: 8160-8180
Primary Site [400]: Any
Age at Diagnosis [230]: 000 - 008
ICCC Diagnostic Group: VIIIa Osteosarcoma
Histologic Type ICD-O-3 [522]: 9180-9200
Primary Site [400]: Any
Age at Diagnosis [230]: 000 - 005
ICCC Diagnostic Group: VIIIb Chondrosarcoma
Histologic Type ICD-O-3 [522]: 9220-9230
Primary Site [400]: Any
Histologic Type ICD-O-3 [522]: 9231, 9240
Primary Site [400]: C400-C419
Age at Diagnosis [230]: 000 - 005
ICCC Diagnostic Group: VIIIc Ewing sarcoma
Histologic Type ICD-O-3 [522]: 9260
Primary Site [400]: C400-C419, C809
Histologic Type ICD-O-3 [522]: 9363, 9364
Primary Site [400]: C400-C419
Age at Diagnosis [230]: 000 - 003
ICCC Diagnostic Group: Xb Non-gonadal germ cell
Histologic Type ICD-O-3 [522]: 9060-9102
Primary Site [400]: C000-C559, C570-C619, C630-C699, C739-C750,
C754-C809
Age at Diagnosis [230]: 008 - 014
ICCC Diagnostic Group: Xd Gonadal carcinoma
Histologic Type ICD-O-3 [522]: 8010-8041, 8050-8075, 8082, 8120-8122,
8130-8141, 8143, 8155, 8190-8201, 8210, 8211, 8221-8241,
8244-8246, 8260-8263, 8290, 8310, 8320, 8323, 8430, 8440,
8480-8490, 8504, 8510, 8550, 8560-8573
Primary Site [400]: C569, C620-C629
Histologic Type ICD-O-3 [522]: 8380, 8381, 8441-8473
Primary Site [400]: Any
Age at Diagnosis [230]: 000 - 014
ICCC Diagnostic Group: XIb Thyroid carcinoma
Histologic Type ICD-O-3 [522]: 8010-8041, 8050-8075, 8082, 8120-8122,
8130-8141, 8155, 8190, 8200, 8201, 8211, 8230, 8231, 8244-8246,
8260-8263, 8290, 8310, 8320, 8323, 8430, 8440, 8480, 8481,
8500-8573
Primary Site [400]: C739
Histologic Type ICD-O-3 [522]: 8330-8350
Primary Site [400]: Any
Age at Diagnosis [230]: 000 - 005
ICCC Diagnostic Group: XIc Nasopharyngeal carcinoma
Histologic Type ICD-O-3 [522]: 8010-8041, 8050-8075, 8082, 8120-8122,
8130-8141, 8155, 8190, 8200, 8201, 8211, 8230, 8231, 8244-8246,
8260-8263, 8290, 8310, 8320, 8323, 8430, 8440, 8480, 8481,8504,
8510, 8550, 8560-8573
Primary Site [400]: C110-C119
Age at Diagnosis [230]: 000 - 005
ICCC Diagnostic Group: XIe Skin carcinoma
Histologic Type ICD-O-3 [522]: 8010-8041, 8050-8075, 8082, 8090-8110,
8140, 8143, 8147, 8190, 8200, 8240, 8246, 8247, 8260, 8310,
8320, 8323, 8390-8420, 8430, 8480, 8542, 8560, 8570-8573, 8940
Primary Site [400]: C440-C449
Age at Diagnosis [230]: 000 - 004
ICCC Diagnostic Group: XIf NOS carcinoma
Histologic Type ICD-O-3 [522]: 8010-8082, 8120-8155, 8190-8263, 8290,
8310, 8314-8323, 8430-8440, 8480-8580, 8940, 8941
Primary Site [400]: C000-C109, C129-C218, C239-C399, C480-C488,
C500-C559, C570-C619, C630-C639, C659-C729, C750-C809
Age at Diagnosis [230]: 000 - 004
ICCC Diagnostic Group: XIIa Mesothelial neoplasms (M905)
Histologic Type ICD-O-3 [522]: 9050-9053
Primary Site [400]: Any
Age at Diagnosis [230]: 000 - 014
Additional SEER Groups:
Cervix Uteri
Histologic Type ICD-O-3 [522]: Any
Behavior Code ICD-O-3 [523]: 2
Primary Site [400]: C530-C539
Age at Diagnosis [230]: 000 - 014
Placenta: choriocarcinoma
Histologic Type ICD-O-3 [522]: 9100
Primary Site [400]: C589
Age at Diagnosis [230]: 000 - 014
Esophagus, Small Intestine, Rectosigmoid, Rectum, Anus, Anal Canal,
Gallbladder, Other Biliary Tract, Pancreas, Pleura, Breast, Uterus,
NOS, Corpus Uteri, Penis
Histologic Type ICD-O-3 [522]: Any
Primary Site [400]: C150-C159, C170-C179, C199, C209, C210-C218,
C239, C240-C249, C250-C259, C384, C500-C509, C559, C540-C549,
C609
Age at Diagnosis [230]: 000 - 014
Colon, Trachea, Lung and Bronchus
Histologic Type ICD-O-3 [522]: Any other than carcinoid (8240-8245)
Primary Site [400]: C180-C189, C339, C340-C349
Age at Diagnosis [230]: 000 - 014
Cervix Uteri
Histologic Type ICD-O-3 [522]: Any with Behavior ICD-O-3 of 3
Primary Site [400]: C530-C539
Age at Diagnosis [230]: 000 - 014
Prostate: adenocarcinoma
Histologic Type ICD-O-3 [522]: 8140
Primary Site [400]: C619
Age at Diagnosis [230]: 000 - 014
Multiple Myeloma
Histologic Type ICD-O-3 [522]: 9732
Primary Site [400]: Any
Age at Diagnosis [230]: 000 - 014
Chronic Myeloid Leukemia
Histologic Type ICD-O-3 [522]: 9863, 9875, 9876, 9945
Primary Site [400]: Any
Age at Diagnosis [230]: 000 - 014
Chronic Lymphocytic Leukemia
Histologic Type ICD-O-3 [522]: 9823
Primary Site [400]: Any
Age at Diagnosis [230]: 000 - 014]]></description>
<history>
<event version="SE11-001-20" user="greend" date="2005-09-21">Juvenile myelomoncytic leukema (9946) was removed from the group of histologies requiring review.</event>
<event version="SE11-001-21" user="greend" date="2007-07-10">Edit is now bypassed if Over-ride Age/Site/Morph [1990] contains a '3' (Reviewed: Conditions 1 and 2 above both apply).</event>
<event version="SE11-001-23" user="greend" date="2009-01-06">Edit changed to accept blank year of diagnosis instead of 9 filled</event>
<event version="SE16-016-08" user="depryf" date="2017-11-22" ref="67674">Edit syntax updated to allow pre-compilation optimization; no change in behavior.</event>
<event version="SE18-020-01" user="depryf" date="2020-02-04" ref="68281">Changed property names to align with NAACCR XML IDs.</event>
<event version="SE22-022-01" user="secristc" date="2022-02-23" ref="68907">Changed maximum age at DX to 14 for gonadal carcinoma.</event>
<event version="SE24-024-04" user="kirbyk" date="2024-04-16" ref="69326">Removed several dependencies.</event>
</history>
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