edits.seer.internal.rules.IF41_3.xml Maven / Gradle / Ivy
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Java implemenation of the SEER edits.
<rule id="IF41_3" name="Primary Site, Laterality, EOD, ICDO3 (SEER IF41)" tag="N0465" java-path="lines.line" category="inter-field" depends="EOD--Extension,EOD--Old_2_Digit,EOD--Old_4_Digit_Extent,Histologic_Type_ICD-O-3,Primary_Site,Year_of_Diagnosis">
<expression><![CDATA[Integer site = Functions.asInt(line.primarySite.substring(1))
if (line.overRideSiteLatEod == '1' || line.histologicTypeIcdO3 == null || line.dateOfDiagnosisYear > '2003' || line.dateOfDiagnosisYear == null)
return true
String eodOld4DigitExtent = null
if (line.eodOld4Digit != null && line.eodOld4Digit.length() > 2)
eodOld4DigitExtent = line.eodOld4Digit.substring(2, 3)
if (Functions.matches(line.primarySite, /^C(079|080|09[189]|301|31[02]|34[1-9]|384|50\d|569|570|62\d|63[01]|6[456]9|69\d|74\d|754)$/)
|| (line.dateOfDiagnosisYear > '1978' &&
[81,90,400,401,402,403,441,442,446,447,471,472,491,492].contains(site))) {
if ((line.histologicTypeIcdO3 == '9140' && line.dateOfDiagnosisYear > '1987') ||
Functions.between(line.histologicTypeIcdO3, '9590','9989'))
return true
if (line.codingSystemForEod == '0') {
if (line.laterality == '9' && ['0-','4-','5-'].contains(line.eodOld2Digit))
return false
if (line.laterality == '4' && ['0-','4-','5-'].contains(line.eodOld2Digit) &&
! (site == 569 || (site == 649 && line.histologicTypeIcdO3 == '8960')
|| (site == 692 && ['9510','9511','9512','9513','9514'].contains(line.histologicTypeIcdO3))))
return false
}
else if (line.codingSystemForEod == '1') {
if (line.laterality == '9' && Functions.matches(line.eodOld2Digit, /^[01234][-&0-9\s]$/))
return false
if (line.laterality == '4' && Functions.matches(line.eodOld2Digit, /^[01234][-&0-9\s]$/) &&
! (site == 569 || (site == 649 && line.histologicTypeIcdO3 == '8960') ||
(site == 692 && ['9510','9511','9512','9513','9514'].contains(line.histologicTypeIcdO3))))
return false
}
else if (line.codingSystemForEod == '3') {
if (line.laterality == '9' && Functions.matches(eodOld4DigitExtent, /^[0123\s]$/))
return false
if (line.laterality == '4' && Functions.matches(eodOld4DigitExtent, /^[0123\s]$/) &&
! (site == 569 || (site == 649 && line.histologicTypeIcdO3 == '8960')
|| (site == 692 && ['9510','9511','9512','9513','9514'].contains(line.histologicTypeIcdO3))))
return false
}
else if (line.codingSystemForEod == '4') {
if (line.laterality == '9' &&
(Functions.between(site,500,509) && (Functions.matches(line.eodExtension, /^[01]\d$/)) ||
(Functions.matches(line.primarySite, /^C(079|08[01]|09[0189]|301|31[02]|34[1-9]|384|40[0-3]|4[79][12]|569|570|62\d|63[01]|6[456]9|69\d|74\d|754)$/) &&
Functions.matches(line.eodExtension, /^([012]\d|30)$/)) ||
([441,442,446,447].contains(site) && Functions.matches(line.eodExtension, /^([0-3]\d|40)$/))))
return false
if ([90,91,98,99,569].contains(site) ||
(site == 649 && line.histologicTypeIcdO3 == '8960') ||
(site == 692 && ['9510','9511','9512','9513','9514'].contains(line.histologicTypeIcdO3)))
return true
if (line.laterality == '4' &&
((Functions.between(site,500,509) && Functions.matches(line.eodExtension, /^[01]\d$/)) ||
(Functions.matches(line.primarySite, /^C(079|08[01]|09[0189]|301|31[02]|34[1-9]|384|40[0-3]|4[79][12]|569|570|62\d|63[01]|6[456]9|69\d|74\d|754)$/)
&& Functions.matches(line.eodExtension, /^([012]\d|30)$/)) ||
([441,442,446,447].contains(site) && Functions.matches(line.eodExtension, /^([0-3]\d|40)$/))))
return false
}
}
return true]]></expression>
<message>Primary Site, Laterality and EOD conflict (ICD-O-3)</message>
<description><![CDATA[The edit is skipped if any of the following conditions are true:
1) Over-ride Site/Lat/EOD contains a '1' (review complete)
2) Inter-Field edit flag "Date of Diagnosis is not valid." has been triggered
3) Histologic Type ICD-O-3[522] is empty
4) Year of Diagnosis[390] > 2003 or blank
5) Histologic Type ICD-O-3[522] = 9590-9989
6) Histologic Type ICD-O-3[522] = 9140 and Year of Diagnosis[390]
greater than 1987
For all diagnosis years, the following are considered paired organ sites for purposes of this edit:
C079 Parotid gland
C080 Submandibular gland
C091 Tonsillar pillar
C098-C099 Tonsil, NOS
C301 Middle Ear
C310 Maxillary sinus
C312 Frontal sinus
C341-C349 Lung
C384 Pleura
C500-C509 Breast
C569 Ovary
C570 Fallopian tube
C620-C629 Testis
C630 Epididymis
C631 Spermatic cord
C649 Kidney, NOS
C659 Renal pelvis
C669 Ureter
C690-C699 Eye
C740-C749 Adrenal gland
C754 Carotid body
For cases with year of diagnosis[390] > 1978 but not 9999 the following are also considered paired organ sites for purposes of this edit:
C081 Sublingual gland
C090 Tonsillar fossa
C400 Long bones of upper limb, scapula and associated joints
C401 Short bones of upper limb and associated joints
C402 Long bones of lower limb and associated joints
C403 Short bones of lower limb and associated joints
C441 Skin of eyelid
C442 Skin of external ear
C446 Skin of upper limb and shoulder
C447 Skin of lower limb and hip
C471 Peripheral nerves and autonomic nervous system of upper limb and
shoulder
C472 Peripheral nerves and autonomic nervous system of lower limb and hip
C491 Connective, subcutaneous, and other soft tissues of upper limb and
shoulder
C492 Connective, subcutaneous, and other soft tissues of lower limb and
hip
For the above paired organ sites, if Laterality[410] is bilateral involvement, lateral origin unknown (4) or unknown (9), the extent of disease should not specify in situ, localized or regional by direct extension only. The follow are the criteria for each of the extent of disease coding systems.
1. For Nonspecific Extent of Disease (Coding System for EOD[870] = 0):
A. If Laterality[410] is '9' (no information concerning laterality),
EOD--Old 2 digit[850] cannot be coded '0-' (in situ carcinoma), '4-'
(localized), or '5-' (regional by direct extension only.
B. If Laterality[410] is '4' (bilateral involvement; lateral origin
unknown: stated to be a single primary), then EOD--Old 2 digit[850]
cannot be coded '0-' (in situ carcinoma), '4-' (localized), or '5-'
(regional direct extension only) for site/histology combinations
other than:
C569 Ovary
C649 Kidney 8960 Wilms tumor
C692 Retina 9510-9514 Retinoblastoma,
2. For Two-Digit Extent of Disease (Coding System for EOD[870] = 1):
A. If Laterality[410] is '9' (no information concerning laterality),
then the first digit of EOD--Old 2 digit[850] cannot be '0', '1',
'2', '3', or '4'.
B. If Laterality[410] is '4' (bilateral involvement, lateral origin
unknown: stated to be a single primary), then the first digit of
EOD--Old 2 digit[850] cannot be '0', '1', '2', '3', or
'4' for site histology combinations other than
C569 Ovary
C649 Kidney 8960 Wilms tumor
C692 Retina 9510-9514 Retinoblastoma.
3. For Four Digit Extent of Disease (Coding System for EOD[870] = 3):
A. If Laterality[410] is '9' (no information concerning laterality),
then the third digit of EOD--Old 4 digit[860] must be greater than
'3'.
B. If Laterality[410] is '4' (bilateral involvement, lateral origin
unknown: stated to be a single primary), then the third digit of
EOD--Old 4 digit[860] must be greater than '3' for site/histology
combinations other than
C569 Ovary
C649 Kidney 8960 Wilms tumor
C692 Retina 9510-9514 Retinoblastoma.
4. For Ten Digit Site-specific Extent of Disease(Coding System for
EOD[870]=4):
IF
A. Laterality[410] is '9' (no information concerning laterality)
OR
B. Laterality[410] is '4' (bilateral involvement, lateral origin
unknown: stated to be a single primary), for site/histology
combinations other than
C090 Tonsillar fossa
C091 Tonsillary pillar
C098-C099 Tonsil, NOS
C569 Ovary
C649 Kidney 8960 Wilms tumor
C692 Retina 9510-9514 Retinoblastoma,
THEN the EOD--extension[790] must not be:
'00' thru '19' for sites C500-C509 Breast
'00' thru '30' for all other paired organ sites
'00' thru '40' for sites C441,C442,C446,C447 Skin.]]></description>
<history>
<event version="SE11-001-17" user="greend" date="2003-10-10">For EOD coding system = '4', the following sites are excluded from the edit. C090/Tonsillar fossa; C091/Tonsillar pillar; C098-C099/Tonsil, NOS</event>
<event version="SE11-001-18" user="greend" date="2004-12-29">Edit modified to look at the CS Extension field for diagnosis years 2004+.</event>
<event version="SE11-001-19" user="greend" date="2005-07-12">CS Extension edit check was removed from edit.</event>
<event version="SE11-001-21" user="greend" date="2007-08-02">Definition of localized for breast 1988+ cases modified from 00-10 to 00-19.</event>
<event version="SE12-002-01" user="murphyr" date="2009-12-16">9-filled year of diagnosis no longer recognized.</event>
<event version="SE12-002-01" user="murphyr" date="2009-12-18">Edit now skipped if year of diagnosis is blank.</event>
<event version="SE16-016-08" user="depryf" date="2017-11-22" ref="67674">Edit syntax updated to allow pre-compilation optimization; no change in behavior.</event>
<event version="SE18-020-01" user="depryf" date="2020-02-04" ref="68281">Changed property names to align with NAACCR XML IDs.</event>
<event version="SE18-020-05" user="kirbyk" date="2020-07-27" ref="68443">Replaced EOD--Old 4 Digit Extent sub-field with EOD--Old 4 Digit parent field.</event>
<event version="SE24-024-06" user="kirbyk" date="2024-07-03" ref="69326">Removed some edit dependencies.</event>
</history>
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