edits.seer.internal.rules.IF617.xml Maven / Gradle / Ivy
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Java implemenation of the SEER edits.
<rule id="IF617" name="TNM N, Size Nodes, Site Spec - Ed 7 (COC)" tag="N2244" java-path="lines.line" category="inter-field" depends="Behavior_Code_ICD-O-3,CS_Site-Specific_Factor_1,Histologic_Type_ICD-O-3,Primary_Site,TNM_Clin_N,TNM_Path_N,Type_of_Reporting_Source,Year_of_Diagnosis">
<expression><![CDATA[//Skip conditions 1, 2, 3
if (line.dateOfDiagnosisYear == null || line.dateOfDiagnosisYear < '2016' || line.typeOfReportingSource == '7' || line.histologicTypeIcdO3 == null)
return true
//Skip condition 6
if ((line.tnmClinN == null && line.tnmPathN == null) || (line.tnmClinN == '88' && line.tnmPathN == '88'))
return true
//Skip conditions 4, 7
if (line.behaviorCodeIcdO3 == '0' || line.behaviorCodeIcdO3 == '1' || (line.tnmEditionNumber != '07' && line.tnmEditionNumber != 'U7'))
return true
//If this site group is not in the table, pass edit (skip condition 5)
String siteGroup = (String)((Closure)Context.AJCC7CodeLookup16).call(line)
if (!(siteGroup ==~ /^00[367]|04[ABCD]|05[AB]|029$/))
return true
String ssf = line.csSiteSpecificFactor1
if (siteGroup == '029')
ssf = line.csSiteSpecificFactor16
if (ssf == '988' || ssf == '999')
return true
if (ssf ==~ /^99[0123]$/)
ssf = '030'
else if (ssf ==~ /^99[456]$/)
ssf = '050'
else if (ssf == '997')
ssf = '061'
boolean pathFail = false
Map groupMap = (Map)((Map)Context.IF617_Table).getOrDefault(siteGroup, [:])
if (line.tnmPathN != null ) {
//If Path N value is not in the table for this site group, check Clin N
if (groupMap.containsKey(line.tnmPathN)) {
List validNodes = (List)groupMap.getOrDefault(line.tnmPathN, [])
if (validNodes.contains(Functions.asInt(ssf)))
return true
else
pathFail = true
}
}
if (line.tnmClinN == null && pathFail)
return false
if (line.tnmClinN != null && groupMap.containsKey(line.tnmClinN))
return ((List)groupMap.getOrDefault(line.tnmClinN, [])).contains(Functions.asInt(ssf))
return true]]></expression>
<message>TNM N and Size Nodes conflict for site/hist combination</message>
<description><![CDATA[This edit is skipped if any of the following conditions is true:
1. Year of Date of Diagnosis is less than 2016, blank (unknown), or invalid
2. Type of Reporting Source = 7 (Death Certificate Only)
3. Histologic Type ICD-O-3 is blank
4. Behavior Code ICD-O-3 = 0 (benign) or 1 (borderline)
5. Site/Histology where numeric value for size of nodes is not collected
6. TNM Clin N and TNM Path N are both blank or 88
7. TNM Edition Number not = 07, U7
8. SSF1 for site/histo groups 3-7 = 988, SSF16 for site/histo group 29 = 988
Skip for numbers 5, 8 applied after determination of site/histology group
TNM Clin N and TNM Path N may be blank. If one or both of these are entered, the field(s) will
be edited site-specifically. A cN or pN category will be compared to the appropriate site-
specific factor for the site/histology. The edit will first compare the number of nodes to pN
category entered in TNM Path N, and then to cN category entered in TNM Clin N.The edit
comparisons will proceed as follows:
1. If TNM PATH N is empty:
a. TNM Clin N and Site-Specific Factor: Pass, edit passes
b. TNM Clin N and Site-Specific Factor: Fail, edit fails
2. If TNM Path N is coded:
a. TNM Path N and Site-Specific Factor: Pass, edit passes.
b. TNM Path N and Site-Specific Factor: Fail
1. If TNM Clin N is empty, edit fails
2. If TNM Clin N is coded:
a. TNM Clin N and Site-Specific Factor: Pass, edit passes
b. TNM Clin N and Site-Specific Factor: Fail, edit fails
"980", "980 millimeters or larger", is the largest possible size for nodes. Nonspecific size
values are converted to numeric values for purposes of the edit. The edit passes if size of
nodes is coded "999", unknown.
The site-specific TNM N values with the corresponding size of nodal metastasis/size of nodes,
and the Site-Specific Factor used to collect the information, are listed below. The number next
to each site title indicates the respective chapter in the AJCC Cancer Staging Manual, Edition
7. The list includes only those sites/histology groups where pathologic N is based on the size
of regional nodal metastasis/nodes. The site/histology groups are identified by site and
histology in the edits Primary Site, AJCC Stage Group 2016 - Ed 7 (COC), Primary Site, Stage
Group 2016 - Ed 7 (NPCR), and Primary Site, Stge Group 2016 - Ed 7 (SEER).
NOTE: Size of lymph nodes is also involved in assignment of N category for Vulva, Renal
Pelvis/Ureter, and Urethra, but this information is not collected in a separate site-specific
factor. Node size is collected as a code rather than a numeric value in a site-specific factor
for Testis.
3. Lip and Oral Cavity
SSF 1
TNM N: 0 1 2 2A 2B 2C 3
Size of Nodes 000 001-030 001-060 031-060 001-060 001-060 061-980
4. Pharynx
4A. Oropharynx and Hypopharynx
4D. Oropharynx
SSF 1
TNM N: 0 1 2 2A 2B 2C 3
Size of Nodes 000 001-030 001-060 031-060 001-060 001-060 061-980
4B. Nasopharynx
4C. Nasopharynx
SSF 1
TNM N: 0 1 2 3A
Size of Nodes 000 001-060 001-060 061-980
5. Larynx
5A. Supraglottis, Subglottis, Other
5B. Glottis
SSF 1
TNM N: 0 1 2 2A 2B 2C 3
Size of Nodes 000 001-030 001-060 031-060 001-060 001-060 061-980
6. Nasal Cavity and Paranasal Sinuses
SSF 1
TNM N: 0 1 2 2A 2B 2C 3
Size of Nodes 000 001-030 001-060 031-060 001-060 001-060 061-980
7. Major Salivary Glands
SSF 1
TNM N: 0 1 2 2A 2B 2C 3
Size of Nodes 000 001-030 001-060 031-060 001-060 001-060 061-980
29. Cutaneous Squamous Cell Carcinoma and other Cutaneous Carcinomas
SSF 16
TNM N: 0 1 2 2A 2B 2C 3
Size of Nodes 000 001-030 001-060 031-060 001-060 001-060 061-980]]></description>
<history>
<event version="SE16-015-01" user="kirbyk" date="2016-06-10" ref="67450">Edit created.</event>
<event version="SE16-016-01" user="kirbyk" date="2017-01-18" ref="67596">Added skip condition for TNM Edition Number; updated description.</event>
<event version="SE16-016-08" user="depryf" date="2017-11-22" ref="67674">Edit syntax updated to allow pre-compilation optimization; no change in behavior.</event>
<event version="SE18-018-02" user="schadega" date="2018-05-18" ref="67743">Name change.</event>
<event version="SE18-019-01" user="kirbyk" date="2019-04-01" ref="68134">Added valid combinations; edit will now fail for invalid TNM N values.</event>
<event version="SE18-019-03" user="kirbyk" date="2019-08-07" ref="68211">Edit will not fail for invalid TNM N values; for groups 4B and 4C, changed TNM 3 to TNM 3A.</event>
<event version="SE18-020-01" user="depryf" date="2020-02-04" ref="68281">Changed property names to align with NAACCR XML IDs.</event>
</history>
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