edits.seer.internal.rules.IFN3069.xml Maven / Gradle / Ivy

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Java implemenation of the SEER edits.
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        <rule id="IFN3069" name="_SYS Schema ID, Site, Histo, Sex (NAACCR)" tag="N3069" java-path="lines.line" category="inter-field" depends="Year_of_Diagnosis">
            <expression><![CDATA[if (line.dateOfDiagnosisYear == null || line.dateOfDiagnosisYear < '2018' || line.sex == null || line.primarySite == null || line.histologicTypeIcdO3 == null)
    return true

String hist = line.histologicTypeIcdO3
String sex = line.sex
String schemaId = line.schemaId

if (!Functions.matches(line.primarySite, /^C48[1-8]$/) || hist == null)
    return true

int histInt = Functions.asInt(hist)
if (histInt == 8806 || histInt == 8930 || histInt == 8931) {
    if (Functions.matches(sex, /^[13459]$/) && schemaId != '00450')
        return false
    if (Functions.matches(sex, /^[26]$/) && schemaId != '00552')
        return false
}
if ((8000 <= histInt && 8700 >= histInt) || (8720 <= histInt && histInt <= 8790) || Functions.matches(hist, /$8822|89(33|[568]0)|90([056789]0|52|71|73|85|91)|91[01]0|970[01]^/)) {
    if (Functions.matches(sex, /^[13459]$/) && schemaId != '00440')
        return false
    if (Functions.matches(sex, /^[26]$/) && schemaId != '00552')
        return false
}

return true]]></expression>
            <message>Primary Site, Histologic Type ICD-O-3, Sex are incompatible with Schema ID.</message>
            <description><![CDATA[_SYS in edit name indicates an edit on system-generated data items.  The edit is
intended for use by software vendors in testing the accuracy of algorithms used
to assign Schema ID, and for use by central registries in verifying the quality
of submitted data.

1. The edit is skipped for the following conditions:
   a. Date of diagnosis before 2018, invalid or blank
   b. Sex is blank.
   c. Primary Site is blank
   d. Histologic Type ICD-O-3 is blank

2. This edit verifies that Schema ID has been assigned correctly where Primary
   Site and Histologic Type ICD-O-3 codes are not sufficient to identify the
   appropriate EOD staging scheme. Sex is required to discriminate between
   histologies assigned to Primary Peritoneal Carcinoma (female),
   Retroperitoneum (male), and Soft Tissue Other.

   The edit checks that Schema ID, Primary Site code, Histologic Type ICD-O-3
   code, and Sex code occur together within the edited record, as shown in the
   following chart.  If there is an edit failure, the problem may be due to a
   software error. If coding is reviewed and correct, the software vendor should
   be consulted for assistance in resolving the issue.


    SCHEMA ID                                 SITE    HISTO         Sex

    00440  Retroperitoneum                    C481-   8000-8700     1,3,4,5,9
                                              C482,   8720-8790
                                              C488    8822, 8933
                                                      8950, 8960
                                                      8980, 9000
                                                      9050, 9052
                                                      9060
                                                      9070-9071
                                                      9073, 9080
                                                      9085
                                                      9090-9091
                                                      9100, 9110
                                                      9700-9701

    00450  Soft Tissue Other                  C481-   8806          1,3,4,5,9
                                              C482,   8930
                                              C488    8931

    00552  Primary Peritoneal Carcinoma       C481-   8000-8700     2,6
                                              C482,   8720-8790
                                              C488    8806, 8822
                                                      8930-8931
                                                      8933, 8950
                                                      8960, 8980
                                                      9000, 9050
                                                      9052, 9060
                                                      9070-9071
                                                      9073, 9080
                                                      9085
                                                      9090-9091
                                                      9100, 9110
                                                      9700-9701


SCHEMA ID   SEX CODES AND DEFINITIONS

00450       1: Male
            3: Other (Hermaphrodite)
            4: Transsexual, NOS
            5: Transsexual, natal male
            9: Not stated, unknown

00552       2: Female
            6: Transsexual, natal female]]></description>
            <history>
                <event version="SE18-018-10" user="kirbyk" date="2018-12-04" ref="68067">Edit created.</event>
                <event version="SE18-020-01" user="depryf" date="2020-02-04" ref="68281">Changed property names to align with NAACCR XML IDs.</event>
                <event version="SE18-020-05" user="beverung" date="2020-07-22" ref="68372">Updated skip conditions.</event>
            </history>
        </rule>