edits.seer.internal.rules.IFN6077.xml Maven / Gradle / Ivy

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Java implemenation of the SEER edits.
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        <rule id="IFN6077" name="SSDIs, Benign Brain and CNS (NAACCR)" tag="N6077" java-path="lines.line" category="inter-field" depends="Year_of_Diagnosis">
            <expression><![CDATA[if (line.dateOfDiagnosisYear == null || line.dateOfDiagnosisYear < '2019' || !['00721','00722','09721','09722'].contains(line.schemaId) || line.behaviorCodeIcdO3 == null)
    return true

String behav = line.behaviorCodeIcdO3
String chrom1p = line.chromosome1pLossHeterozygosity
String chrom19q = line.chromosome19qLossHeterozygosity
String methylation = line.methylationOfO6MGMT
if (chrom1p == '6' && behav != '0' && behav != '1')
    return false
if (chrom19q == '6' && behav != '0' && behav != '1')
    return false
if (methylation == '6' && behav != '0' && behav != '1')
    return false
if (behav == '0' || behav == '1') {
    if (chrom1p != '6' && chrom1p != '8' && chrom1p != null)
        return false
    if (chrom19q != '6' && chrom19q!= '8' && chrom19q != null)
        return false
    if (methylation != '6' && methylation!= '8' && methylation != null)
        return false
}

return true]]></expression>
            <message>Chromosome 1p: Loss of Heterozygosity (LOH) conflicts with Behavior Code ICD-O-3</message>
            <description><![CDATA[This edit verifies that SSDIs for Brain and CNS are coded consistently
with Behavior ICD-O-3 codes 0 and 1 (benign and borderline).

1. The edit is skipped for the following conditions:
    a. Diagnosis date is less than 2019, blank (unknown), or invalid.
    b. Behavior Code ICD-O-3 is blank.
    c. Schema ID not = 00721, 00722, 09721, 09722

3. If Chromosome 1p: Loss of Heterozygosity (LOH) is coded 6 (Benign or
      borderline tumor),
      Behavior Code ICD-O-3 must = 0 (benign) or 1 (borderline).

4. If Chromosome 19q: Loss of Heterozygosity (LOH) is coded 6 (Benign or
      borderline tumor),
      Behavior Code ICD-O-3 must = 0 (benign) or 1 (borderline).

5. If Methylation of O6-Methylguanine-Methyltransferase is coded 6 (Benign or
      borderline tumor),
       Behavior Code ICD-O-3 must = 0 (benign) or 1 (borderline).

6. If Behavior Code ICD-O-3 = 0 (benign) or 1 (borderline),
       Chromosome 1p: Loss of Heterozygosity (LOH) must be coded 6 (benign or
      borderline) or 8 (not applicable), or blank

7. If Behavior Code ICD-O-3 = 0 (benign) or 1 (borderline),
       Chromosome 19q: Loss of Heterozygosity (LOH) must be coded 6 (benign or
      borderline) or 8 (not applicable), or blank

8. If Behavior Code ICD-O-3 = 0 (benign) or 1 (borderline),
       Methylation of O6-Methylguanine-Methyltransferase must be coded 6 (benign or
      borderline) or 8 (not applicable), or blank]]></description>
            <history>
                <event version="SE18-019-02" user="kirbyk" date="2019-05-09" ref="68160">Edit created.</event>
                <event version="SE18-020-01" user="depryf" date="2020-02-04" ref="68281">Changed property names to align with NAACCR XML IDs.</event>
                <event version="SE23-023-01" user="cooki" date="2023-02-21" ref="69150">Added skip conditions for Schema IDs 09721 and 09722.</event>
            </history>
        </rule>