edits.seer.internal.rules.IFN6140.xml Maven / Gradle / Ivy
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Java implemenation of the SEER edits.
<rule id="IFN6140" name="Behavior Code ICDO3, EOD Tumor/Nodes/Mets, Schema ID (SEER)" tag="N6140" java-path="lines.line" category="inter-field">
<expression><![CDATA[if (line.dateOfDiagnosisYear == null || line.dateOfDiagnosisYear < '2021' || line.schemaId == null || line.typeOfReportingSource == '7')
return true
if (line.behaviorCodeIcdO3 == null || ['0','1'].contains(line.behaviorCodeIcdO3))
return true
if (line.eodPrimaryTumor == null && line.eodRegionalNodes == null && line.eodMets == null)
return true
boolean schemaIdInList5To10 =
((List)Context.EOD_SchemaId_List_5).contains(line.schemaId) ||
((List)Context.EOD_SchemaId_List_6).contains(line.schemaId) ||
((List)Context.EOD_SchemaId_List_7).contains(line.schemaId) ||
((List)Context.EOD_SchemaId_List_8).contains(line.schemaId) ||
((List)Context.EOD_SchemaId_List_9).contains(line.schemaId) ||
((List)Context.EOD_SchemaId_List_10).contains(line.schemaId)
if (schemaIdInList5To10 && line.behaviorCodeIcdO3 == '2')
return false
Map eodValuesMap = (Map)((Map)((Map)Context.IFN_6140_Table).get(line.behaviorCodeIcdO3))?.get(line.schemaId)
Map eodPrimaryTumorValues = (Map)eodValuesMap?.get('eodPrimaryTumor')
Map eodRegionalNodesValues = (Map)eodValuesMap?.get('eodRegionalNodes')
Map eodMetsValues = (Map)eodValuesMap?.get('eodMets')
boolean eodPrimaryTumorCondition = line.behaviorCodeIcdO3 == '2'
boolean eodRegionalNodesCondition = line.behaviorCodeIcdO3 == '2'
boolean eodMetsCondition = line.behaviorCodeIcdO3 == '2'
if (eodPrimaryTumorValues != null) {
List eqValues = (List)eodPrimaryTumorValues.get('eq')
List neValues = (List)eodPrimaryTumorValues.get('ne')
eodPrimaryTumorCondition = (eqValues == null || (line.eodPrimaryTumor != null && eqValues.contains(line.eodPrimaryTumor))) &&
(neValues == null || (line.eodPrimaryTumor == null || !neValues.contains(line.eodPrimaryTumor)))
}
if (eodRegionalNodesValues != null) {
List eqValues = (List)eodRegionalNodesValues.get('eq')
List neValues = (List)eodRegionalNodesValues.get('ne')
eodRegionalNodesCondition = (eqValues == null || (line.eodRegionalNodes != null && eqValues.contains(line.eodRegionalNodes))) &&
(neValues == null || (line.eodRegionalNodes == null || !neValues.contains(line.eodRegionalNodes)))
}
if (eodMetsValues != null) {
List eqValues = (List)eodMetsValues.get('eq')
List neValues = (List)eodMetsValues.get('ne')
eodMetsCondition = (eqValues == null || (line.eodMets != null && eqValues.contains(line.eodMets))) &&
(neValues == null || (line.eodMets == null || !neValues.contains(line.eodMets)))
}
if (eodMetsValues == null && eodRegionalNodesValues == null && eodPrimaryTumorValues == null)
return true
if (line.behaviorCodeIcdO3 == '2' && (!(eodPrimaryTumorCondition && eodRegionalNodesCondition && eodMetsCondition)))
return false
if (line.behaviorCodeIcdO3 == '3' && (!(eodPrimaryTumorCondition || eodRegionalNodesCondition || eodMetsCondition)))
return false
return true]]></expression>
<message>Behavior Code ICD-O-3 conflicts with EOD Primary Tumor, EOD Regional Nodes, and EOD Mets</message>
<description><![CDATA[This edit checks consistency of coding between Behavior Code ICD-O-3, codes
2 and 3, and EOD Primary Tumor, EOD Regional Nodes, and EOD Mets by Schema ID,
for all Schema IDs excluding 00580, Prostate.
1. This edit is skipped if any of the following conditions is true:
a. Diagnosis date is invalid, blank (unknown), or before 2021.
b. Schema ID is blank
c. Behavior Code ICD-O-3 is blank or = 0 or 1
d. EOD Primary Tumor, EOD Regional Nodes, and EOD Mets are all blank
e. Type of Reporting Source = 7 (Death Certificate Only)
2. If Behavior Code ICD-O-3 = 2 (in situ)
a. If Schema ID = 00480 (Breast), EOD Primary Tumor must = 000, 050, 070
and EOD Regional Nodes must = 000, 030, 050, 070, and EOD Mets must = 00
or 05
b. If Schema ID = 00553 (Fallopian Tube), EOD Primary Tumor must = 000, 050,
070, or 080 and EOD Regional Nodes must = 000 or 050 and EOD Mets must = 00
c. If Schema ID = 00530 (Corpus Carcinoma) or 00551 (Ovary), EOD Primary
Tumor must = 000 or 050 and EOD Regional Nodes must = 000 or 050 and EOD Mets must = 00
d. If Schema ID = 00723 (Intracranial Gland), or 09723 (Intracranial Gland V9: 2023+),
EOD Primary Tumor must = 000 and EOD mets must = 00
e. If Schema ID is in list 1, EOD Primary Tumor must = 000 or 050 and
EOD Regional Nodes must = 000, and EOD Mets must = 00
f. If Schema ID is in list 2, EOD Primary Tumor must = 000 and
EOD Regional Nodes must = 000, and EOD Mets must = 00
g. If Schema ID is in list 3, EOD Primary Tumor must = 000 and
EOD Regional Nodes must = 000, 040, or 050 and EOD Mets must = 00
h. If Schema ID is in list 4, EOD Primary Tumor must = 000 and
EOD Regional Nodes must = 000 or 050 or 070 and EOD Mets must = 00
3. If Schema ID is in list 5, 6, 7, 8, 9, or 10, Behavior Code ICD-O-3 must not = 2
4. If Behavior Code ICD-O-3 = 3 (invasive)
a. If Schema ID = 00480 (Breast), EOD Primary Tumor must not = 000 or
EOD Regional Nodes must not = 000, 030, 050, or 070 or EOD Mets must not
= 00 or 05
b. If Schema ID = 00553 (Fallopian Tube), EOD Primary Tumor must not = 000,
050, 070, or 080 or EOD Regional Nodes must not = 000 or 050 or EOD Mets
must not = 00
c. If Schema ID = 00530 (Corpus Carcinoma) or 00551 (Ovary), EOD Primary
Tumor must not = 000 or 050 or EOD Regional Nodes must not = 000 or 050 or
EOD Mets must not = 00
d. If Schema ID = 00723 (Intracranial Gland), or 09723 (Intracranial Gland V9: 2023+),
EOD Primary Tumor must not = 000 or 050 or EOD Mets must not = 00
e. If Schema ID is in list 1, EOD Primary Tumor must not = 000 or 050 or
EOD Regional Nodes must not = 000 or EOD Mets must not = 00
f. If Schema ID is in list 2, EOD Primary Tumor must not = 000 or
EOD Regional Nodes must not = 000 or EOD Mets must not = 00
g. If Schema ID is in list 3, EOD Primary Tumor must not = 000 or EOD
Regional Nodes must not = 000, 040 or 050 or EOD Mets must not = 00
h. If Schema ID is in list 4, EOD Primary Tumor must not = 000 or EOD
Regional Nodes must not = 000 or 050 or 070 or EOD Mets must not = 00
i. If Schema ID is in list 8, EOD Primary Tumor must not = 050 or EOD
Mets must not = 00
LIST 1: EOD Primary Tumor with in situ codes 000, 050, regional nodes
code 000
00190 Appendix [8th: 2018-2022]
00570 Penis
00610 Kidney Renal Pelvis
00620 Bladder
00631 Urethra
00633 Urethra Prostatic
00750 Parathyroid
09190 Appendix [V9: 2023+]
LIST 2: EOD Primary Tumor with in situ code 000, regional nodes code 000
00071 Lip
00072 Tongue Anterior
00073 Gum
00074 Floor of Mouth
00075 Palate Hard
00076 Buccal Mucosa
00077 Mouth Other
00080 Major Salivary Gland
00090 Nasopharynx
00100 Oropharynx HPV-Mediated (p16+)
00111 Oropharynx p16-
00112 Hypopharynx
00118 Pharynx Other
00119 Middle Ear
00121 Maxillary Sinus
00122 Nasal Cavity and Ethmoid Sinus
00128 Sinus Other
00130 Larynx Other
00131 Larynx Supraglottic
00132 Larynx Glottic
00133 Larynx Subglottic
00140 Melanoma Head and Neck
00150 Cutaneous Carcinoma Head and Neck
00161 Esophagus Squamous
00169 Esophagus
00170 Stomach
00180 Small Intestine
00200 Colon and Rectum
00210 Anus [8th: 2018-2022]
00220 Liver
00230 Bile Ducts Intrahepatic
00241 Gallbladder
00242 Cystic Duct
00250 Bile Ducts Perihilar
00260 Bile Duct Distal
00270 Ampulla of Vater
00278 Biliary Other
00280 Pancreas
00288 Digestive Other
00290 NET Stomach [8th: 2018-2023]
09290 NET Stomach [V9: 2024+]
00301 NET Duodenum [8th: 2018-2023]
09301 NET Duodenum [V9: 2024+]
00302 NET Ampulla of Vater [8th: 2018-2023]
09302 NET Ampulla of Vater [V9: 2024+]
00310 NET Jejunum and Ileum [8th: 2018-2023]
09310 NET Jejunum and Ileum [V9: 2024+]
00320 NET Appendix [8th: 2018-2023]
09320 NET Appendix [V9: 2024+]
00330 NET Colon and Rectum [8th: 2018-2023]
09330 NET Colon and Rectum [V9:2024+]
00340 NET Pancreas [8th: 2018-2023]
09340 NET Pancreas [V9: 2024+]
00350 Thymus
00358 Trachea
00360 Lung
00370 Pleural Mesothelioma
00378 Respiratory Other
00430 GIST
00460 Merkel Cell Skin
00470 Melanoma Skin
00478 Skin Other
00558 Adnexa Uterine Other
00559 Genital Female Other
00560 Placenta
00590 Testis
00598 Genital Male Other
00600 Kidney Parenchyma
00638 Urinary Other
00640 Skin Eyelid
00650 Conjunctiva
00660 Melanoma Conjunctiva
00671 Melanoma Iris
00672 Melanoma Choroid and Ciliary Body
00690 Lacrimal Gland
00698 Lacrimal Sac
00700 Orbital Sarcoma
00718 Eye Other
00760 Adrenal Gland
00770 NET Adrenal
00778 Endocrine Other
09210 Anus [V9: 2023+]
LIST 3: EOD Primary Tumor with in situ code 000, regional nodes codes
000, 050
00500 Vulva [8th: 2018-2023]
09500 Vulva [V9: 2024+] [regional nodes codes 000 and 040]
00510 Vagina
00520 Cervix [8th: 2018-2020]
09520 Cervix [9th: 2021+]
00552 Primary Peritoneal Carcinoma
LIST 4: EOD Primary Tumor with in situ code 000, regional nodes codes
000, 050, 070
00730 Thyroid
00740 Thyroid Medullary
LIST 5: EOD Primary Tumor with no in situ code, regional nodes code 000
00381 Bone Appendicular Skeleton
00382 Bone Spine
00383 Bone Pelvis
00400 Soft Tissue Head and Neck
00410 Soft Tissue Trunk and Extremities
00421 Soft Tissue Abdomen and Thorax
00422 Heart, Mediastinum, Pleura
00440 Retroperitoneum
00450 Soft Tissue Rare
00459 Soft Tissue Other
00680 Retinoblastoma
00710 Lymphoma Ocular Adnexa
00811 Mycosis Fungoides
00812 Primary Cutaneous Lymphoma
LIST 6: EOD Primary Tumor with no in situ code, regional nodes codes
000, 050
00528 Cervix Sarcoma [2021+]
00541 Corpus Sarcoma
00542 Corpus Adenosarcoma
LIST 7: EOD Primary Tumor with no in situ code, EOD Regional Nodes
coded, EOD Mets = 88
00458 Kaposi Sarcoma
00822 Plasma Cell Disorder (EOD Regional Nodes code 987 = NA)
LIST 8: EOD Primary Tumor with no in situ code, EOD Regional Nodes =
888, EOD Mets coded
00721 Brain [8th: 2018-2022]
00722 CNS Other [8th: 2018-2022]
09721 Brain (V9: 2023+]
09722 CNS Other [V9: 2023+]
09724 Medulloblastoma [V9: 2023+]
LIST 9: EOD Primary Tumor with no in situ code, EOD Regional Nodes
with no code 000, EOD Mets
00060 Cervical Nodes, Unknown Primary
LIST 10: EOD Primary Tumor with no in situ code, EOD Regional Nodes =
888, EOD Mets = 88
00790 Lymphoma
00795 Lymphoma (CLL/SLL)
00821 Plasma Cell Myeloma
00830 HemeRetic
99999 Ill-Defined]]></description>
<history>
<event version="SE21-021-04" user="beverung" date="2021-03-23" ref="68600">Edit created.</event>
<event version="SE21-021-06" user="kirbyk" date="2021-06-02" ref="68675">Fixing edit for schema IDs that are not in any of the edit lists.</event>
<event version="SE22-022-01" user="beverung" date="2022-02-07" ref="68810">Update/add description and logic for Schema IDs 00528, 00530, 00060, 00450 and 00459.</event>
<event version="SE23-023-01" user="cooki" date="2023-02-10" ref="69123">Updated lists for Schema IDs 00190, 00210, 00721, 00722, 09190, 09210, 09721, 09722, and 09724.</event>
<event version="SE23-023-03" user="cooki" date="2023-05-24" ref="69252">Moved Schema ID 00370 from List 5 to List 2.</event>
<event version="SE24-024-01" user="shearerw" date="2024-02-20" ref="69387">Add schema IDs to list 2, 3, and steps 2d and 4d and add EOD Regional Nodes 040 to steps 2g and 4g.</event>
</history>
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