edits.seer.internal.rules.IFN6634.xml Maven / Gradle / Ivy
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Java implemenation of the SEER edits.
<rule id="IFN6634" name="Diagnostic Confirmation, Histology, Genetics (NAACCR)" tag="N6634" java-path="lines.line" category="inter-field" depends="Year_of_Diagnosis"> <expression><![CDATA[if (line.dateOfDiagnosisYear == null || line.dateOfDiagnosisYear < '2022' || line.diagnosticConfirmation == null || line.histologicTypeIcdO3 == null) return true if (!['00790','00830'].contains(line.schemaId) || line.typeOfReportingSource == '7') return true if (((List)Context.IFN6634_List_1).contains(line.histologicTypeIcdO3)) return line.diagnosticConfirmation == '3' if (((List)Context.IFN6634_List_2).contains(line.histologicTypeIcdO3)) return line.diagnosticConfirmation != '3' return true]]></expression> <message>Diagnostic Confirmation conflicts with Histologic Type ICD-O-3</message> <description><![CDATA[This edit confirms that Diagnostic Confirmation is coded correctly for histologies where genetics data/immunophenotyping are listed in the HemeDB, and for other histologies where genetics data/immunophenotyping are listed as "None". 1. This edit is skipped for any of the following: a. Diagnosis date is blank (unknown),invalid, or pre-2022. b. Schema ID is not 00790 or 00830. c. Diagnostic Confirmation is blank d. Histologic Type ICD-O-3 is blank e. Type of Reporting Source = 7 (Death Certificate Only) 2. If histology is in list 1, Diagnostic Confirmation must = 3. 3. If histology is in list 2, Diagnostic Confirmation must not = 3. List 1: Histologies with genetics data/immunophenotyping listed in Heme DB: 9806 Mixed-phenotype acute leukemia with t(9;22)(q34.1;q11.2); BCR-ABL1 9807 Mixed-phenotype acute leukemia with t(v;11q23.3); KMT2A-rearranged 9812 B-lymphoblastic leukemia/lymphoma with t(9;22)(q34.1;q11.2); BCR-ABL1 9813 B-lymphoblastic leukemia/lymphoma with t(v;11q23.3); KMT2A-rearranged 9814 B-lymphoblastic leukemia/lymphoma with t(12;21) (p13.2;q22.1); ETV6-RUNX1 9815 B-lymphoblastic leukemia/lymphoma with hyperdiploidy 9816 B-lymphoblastic leukemia/lymphoma with hypodiploidy 9817 B-lymphoblastic leukemia/lymphoma with t(5;14)(q31.1;q32.1); IGH/IL3 9818 B-lymphoblastic leukemia/lymphoma with t(1;19)(q23;p13.3); TCF3-PBX1 9819 B-lymphoblastic leukemia/lymphoma, BCR-ABL1-like 9865 Acute myeloid leukemia with t(6;9)(p23;q34.1); DEK-NUP214 9866 Acute promyelocytic leukemia with PML-RARA 9869 Acute myeloid leukemia with inv(3)(q21.3q26.2) or t(3;3)(q21.3;q26.2); GATA2, MECOM 9871 Acute myeloid leukemia with inv(16)(p13.1q22) or t(16;16)(p13.1;q22); CBFB-MYH11 9875 Chronic myeloid leukemia, BCR-ABL1-positive 9877 Acute myeloid leukemia with mutated NPM1 9878 Acute myeloid leukemia with biallelic mutation of CEBPA 9879 Acute myeloid leukemia with mutated RUNX1 9896 Acute myeloid leukemia, t(8;21)(q22;q22.1); RUNX1-RUNX1T1 9897 Acute myeloid leukemia with t(9;11)(p21.3;q23.3); KMT2A-MLLT3 9911 Acute myeloid leukemia (megakaryoblastic) with t(1;22)(p13.3;q13.1); RBM15-MKL1 9912 Acute myeloid leukemia with BCR-ABL1 9965 Myeloid/lymphoid neoplasms with PDGFRA rearrangement 9966 Myeloid/lymphoid neoplasms with PDGFRB rearrangement 9967 Myeloid/lymphoid neoplasms with FGFR1 rearrangement 9968 Myeloid/lymphoid neoplasms with PCM1-JAK2 9986 Myelodysplastic syndrome with isolated del(5q) List 2: Histologies without genetics data/immunophenotyping listed as "None": 9590 Malignant lymphoma, NOS 9655 Hodgkin lymphoma, lymphocyte depletion, reticular 9800 Leukemia, NOS 9820 Lymphoid leukemia, NOS 9860 Myeloid leukemia, NOS 9863 Chronic myeloid leukemia, NOS 9980 Myelodysplastic syndrome with single lineage dysplasia 9982 Myelodysplastic syndrome with ring sideroblasts and single lineage dysplasia 9989 Myelodysplastic syndrome, unclassifiable]]></description> <history> <event version="SE22-022-01" user="beverung" date="2022-03-04" ref="68896">Edit Created</event> </history> </rule>
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