edits.seer.internal.rules.IFN6634.xml Maven / Gradle / Ivy

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Java implemenation of the SEER edits.
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        <rule id="IFN6634" name="Diagnostic Confirmation, Histology, Genetics (NAACCR)" tag="N6634" java-path="lines.line" category="inter-field" depends="Year_of_Diagnosis">
            <expression><![CDATA[if (line.dateOfDiagnosisYear == null || line.dateOfDiagnosisYear < '2022' || line.diagnosticConfirmation == null || line.histologicTypeIcdO3 == null)
    return true
if (!['00790','00830'].contains(line.schemaId) || line.typeOfReportingSource == '7')
    return true

if (((List)Context.IFN6634_List_1).contains(line.histologicTypeIcdO3))
    return line.diagnosticConfirmation == '3'
if (((List)Context.IFN6634_List_2).contains(line.histologicTypeIcdO3))
    return line.diagnosticConfirmation != '3'
return true]]></expression>
            <message>Diagnostic Confirmation conflicts with Histologic Type ICD-O-3</message>
            <description><![CDATA[This edit confirms that Diagnostic Confirmation is coded correctly for histologies where
genetics data/immunophenotyping are listed in the HemeDB, and for other histologies where
genetics data/immunophenotyping are listed as "None".

1. This edit is skipped for any of the following:
    a. Diagnosis date is blank (unknown),invalid, or pre-2022.
    b. Schema ID is not 00790 or 00830.
    c. Diagnostic Confirmation is blank
    d. Histologic Type ICD-O-3 is blank
    e. Type of Reporting Source = 7 (Death Certificate Only)

2. If histology is in list 1, Diagnostic Confirmation must = 3.
3. If histology is in list 2, Diagnostic Confirmation must not = 3.

List 1:  Histologies with genetics data/immunophenotyping listed in Heme DB:

9806        Mixed-phenotype acute leukemia with t(9;22)(q34.1;q11.2); BCR-ABL1
9807          Mixed-phenotype acute leukemia with t(v;11q23.3); KMT2A-rearranged
9812        B-lymphoblastic leukemia/lymphoma with t(9;22)(q34.1;q11.2); BCR-ABL1
9813        B-lymphoblastic leukemia/lymphoma with t(v;11q23.3); KMT2A-rearranged
9814        B-lymphoblastic leukemia/lymphoma with t(12;21) (p13.2;q22.1); ETV6-RUNX1
9815        B-lymphoblastic leukemia/lymphoma with hyperdiploidy
9816        B-lymphoblastic leukemia/lymphoma with hypodiploidy
9817        B-lymphoblastic leukemia/lymphoma with t(5;14)(q31.1;q32.1); IGH/IL3
9818        B-lymphoblastic leukemia/lymphoma with t(1;19)(q23;p13.3); TCF3-PBX1
9819        B-lymphoblastic leukemia/lymphoma, BCR-ABL1-like
9865        Acute myeloid leukemia with t(6;9)(p23;q34.1); DEK-NUP214
9866        Acute promyelocytic leukemia with PML-RARA
9869        Acute myeloid leukemia with inv(3)(q21.3q26.2) or t(3;3)(q21.3;q26.2); GATA2, MECOM
9871        Acute myeloid leukemia with inv(16)(p13.1q22) or t(16;16)(p13.1;q22); CBFB-MYH11
9875        Chronic myeloid leukemia, BCR-ABL1-positive
9877        Acute myeloid leukemia with mutated NPM1
9878        Acute myeloid leukemia with biallelic mutation of CEBPA
9879        Acute myeloid leukemia with mutated RUNX1
9896        Acute myeloid leukemia, t(8;21)(q22;q22.1); RUNX1-RUNX1T1
9897        Acute myeloid leukemia with t(9;11)(p21.3;q23.3); KMT2A-MLLT3
9911        Acute myeloid leukemia (megakaryoblastic) with t(1;22)(p13.3;q13.1); RBM15-MKL1
9912        Acute myeloid leukemia with BCR-ABL1
9965        Myeloid/lymphoid neoplasms with PDGFRA rearrangement
9966        Myeloid/lymphoid neoplasms with PDGFRB rearrangement
9967        Myeloid/lymphoid neoplasms with FGFR1 rearrangement
9968        Myeloid/lymphoid neoplasms with PCM1-JAK2
9986        Myelodysplastic syndrome with isolated del(5q)


List 2:  Histologies without genetics data/immunophenotyping listed as "None":

9590        Malignant lymphoma, NOS
9655        Hodgkin lymphoma, lymphocyte depletion, reticular
9800        Leukemia, NOS
9820        Lymphoid leukemia, NOS
9860        Myeloid leukemia, NOS
9863        Chronic myeloid leukemia, NOS
9980        Myelodysplastic syndrome with single lineage dysplasia
9982        Myelodysplastic syndrome with ring sideroblasts and single lineage dysplasia
9989        Myelodysplastic syndrome, unclassifiable]]></description>
            <history>
                <event version="SE22-022-01" user="beverung" date="2022-03-04" ref="68896">Edit Created</event>
            </history>
        </rule>