com.joliciel.talismane.machineLearning.maxent.custom.GISTrainer Maven / Gradle / Ivy
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*
* http://www.apache.org/licenses/LICENSE-2.0
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package com.joliciel.talismane.machineLearning.maxent.custom;
import java.io.IOException;
import java.util.ArrayList;
import java.util.List;
import java.util.concurrent.Callable;
import java.util.concurrent.ExecutionException;
import java.util.concurrent.ExecutorService;
import java.util.concurrent.Executors;
import java.util.concurrent.Future;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import opennlp.maxent.GISModel;
import opennlp.model.DataIndexer;
import opennlp.model.EvalParameters;
import opennlp.model.EventStream;
import opennlp.model.MutableContext;
import opennlp.model.OnePassDataIndexer;
import opennlp.model.Prior;
import opennlp.model.UniformPrior;
/**
* An implementation of Generalized Iterative Scaling. The reference paper for
* this implementation was Adwait Ratnaparkhi's tech report at the University of
* Pennsylvania's Institute for Research in Cognitive Science, and is available
* at
* ftp://ftp.cis.upenn.edu/pub/ircs/tr/97-08.ps.Z.
*
* The slack parameter used in the above implementation has been removed by
* default from the computation and a method for updating with Gaussian
* smoothing has been added per Investigating GIS and Smoothing for Maximum
* Entropy Taggers, Clark and Curran (2002).
*
* http://acl.ldc.upenn.edu/E/E03/E03-1071.pdf The slack
* parameter can be used by setting useSlackParameter to true.
* Gaussian smoothing can be used by setting useGaussianSmoothing
* to true.
*
* A prior can be used to train models which converge to the distribution which
* minimizes the relative entropy between the distribution specified by the
* empirical constraints of the training data and the specified prior. By
* default, the uniform distribution is used as the prior.
*/
public class GISTrainer {
private static final Logger LOG = LoggerFactory.getLogger(GISTrainer.class);
private String currentMessage = "";
/**
* Specifies whether unseen context/outcome pairs should be estimated as occur
* very infrequently.
*/
private boolean useSimpleSmoothing = false;
/**
* Specified whether parameter updates should prefer a distribution of
* parameters which is gaussian.
*/
private boolean useGaussianSmoothing = false;
private double sigma = 2.0;
// If we are using smoothing, this is used as the "number" of
// times we want the trainer to imagine that it saw a feature that it
// actually didn't see. Defaulted to 0.1.
private double _smoothingObservation = 0.1;
private final boolean printMessages;
/**
* Number of unique events which occured in the event set.
*/
private int numUniqueEvents;
/**
* Number of predicates.
*/
private int numPreds;
/**
* Number of outcomes.
*/
private int numOutcomes;
/**
* Records the array of predicates seen in each event.
*/
private int[][] contexts;
/**
* The value associated with each context. If null then context values are
* assumes to be 1.
*/
private float[][] values;
/**
* List of outcomes for each event i, in context[i].
*/
private int[] outcomeList;
/**
* Records the num of times an event has been seen for each event i, in
* context[i].
*/
private int[] numTimesEventsSeen;
/**
* The number of times a predicate occured in the training data.
*/
private int[] predicateCounts;
private int cutoff;
/**
* Stores the String names of the outcomes. The GIS only tracks outcomes as
* ints, and so this array is needed to save the model to disk and thereby
* allow users to know what the outcome was in human understandable terms.
*/
private String[] outcomeLabels;
/**
* Stores the String names of the predicates. The GIS only tracks predicates
* as ints, and so this array is needed to save the model to disk and thereby
* allow users to know what the outcome was in human understandable terms.
*/
private String[] predLabels;
/**
* Stores the observed expected values of the features based on training data.
*/
private MutableContext[] observedExpects;
/**
* Stores the estimated parameter value of each predicate during iteration
*/
private MutableContext[] params;
/**
* Stores the expected values of the features based on the current models
*/
private MutableContext[][] modelExpects;
/**
* This is the prior distribution that the model uses for training.
*/
private Prior prior;
private static final double LLThreshold = 0.0001;
/**
* Initial probability for all outcomes.
*/
private EvalParameters evalParams;
/**
* Creates a new GISTrainer instance which does not print
* progress messages about training to STDOUT.
*
*/
public GISTrainer() {
printMessages = false;
}
/**
* Creates a new GISTrainer instance.
*
* @param printMessages
* sends progress messages about training to STDOUT when true; trains
* silently otherwise.
*/
public GISTrainer(boolean printMessages) {
this.printMessages = printMessages;
}
/**
* Sets whether this trainer will use smoothing while training the model. This
* can improve model accuracy, though training will potentially take longer
* and use more memory. Model size will also be larger.
*
* @param smooth
* true if smoothing is desired, false if not
*/
public void setSmoothing(boolean smooth) {
useSimpleSmoothing = smooth;
}
/**
* Sets whether this trainer will use smoothing while training the model. This
* can improve model accuracy, though training will potentially take longer
* and use more memory. Model size will also be larger.
*
* @param timesSeen
* the "number" of times we want the trainer to imagine it saw a
* feature that it actually didn't see
*/
public void setSmoothingObservation(double timesSeen) {
_smoothingObservation = timesSeen;
}
/**
* Sets whether this trainer will use smoothing while training the model. This
* can improve model accuracy, though training will potentially take longer
* and use more memory. Model size will also be larger.
*/
public void setGaussianSigma(double sigmaValue) {
useGaussianSmoothing = true;
sigma = sigmaValue;
}
/**
* Trains a GIS model on the event in the specified event stream, using the
* specified number of iterations and the specified count cutoff.
*
* @param eventStream
* A stream of all events.
* @param iterations
* The number of iterations to use for GIS.
* @param cutoff
* The number of times a feature must occur to be included.
* @return A GIS model trained with specified
*/
public GISModel trainModel(EventStream eventStream, int iterations, int cutoff) throws IOException {
return trainModel(iterations, new OnePassDataIndexer(eventStream, cutoff), cutoff);
}
/**
* Train a model using the GIS algorithm.
*
* @param iterations
* The number of GIS iterations to perform.
* @param di
* The data indexer used to compress events in memory.
* @return The newly trained model, which can be used immediately or saved to
* disk using an opennlp.maxent.io.GISModelWriter object.
*/
public GISModel trainModel(int iterations, DataIndexer di, int cutoff) {
return trainModel(iterations, di, new UniformPrior(), cutoff, 1);
}
/**
* Train a model using the GIS algorithm.
*
* @param iterations
* The number of GIS iterations to perform.
* @param di
* The data indexer used to compress events in memory.
* @param modelPrior
* The prior distribution used to train this model.
* @return The newly trained model, which can be used immediately or saved to
* disk using an opennlp.maxent.io.GISModelWriter object.
*/
public GISModel trainModel(int iterations, DataIndexer di, Prior modelPrior, int cutoff, int threads) {
if (threads <= 0)
throw new IllegalArgumentException("threads must be at leat one or greater!");
modelExpects = new MutableContext[threads][];
/************** Incorporate all of the needed info ******************/
display("Incorporating indexed data for training... \n");
contexts = di.getContexts();
values = di.getValues();
this.cutoff = cutoff;
predicateCounts = di.getPredCounts();
numTimesEventsSeen = di.getNumTimesEventsSeen();
numUniqueEvents = contexts.length;
this.prior = modelPrior;
// printTable(contexts);
// determine the correction constant and its inverse
double correctionConstant = 0;
for (int ci = 0; ci < contexts.length; ci++) {
if (values == null || values[ci] == null) {
if (contexts[ci].length > correctionConstant) {
correctionConstant = contexts[ci].length;
}
} else {
float cl = values[ci][0];
for (int vi = 1; vi < values[ci].length; vi++) {
cl += values[ci][vi];
}
if (cl > correctionConstant) {
correctionConstant = cl;
}
}
}
display("done.\n");
outcomeLabels = di.getOutcomeLabels();
outcomeList = di.getOutcomeList();
numOutcomes = outcomeLabels.length;
predLabels = di.getPredLabels();
prior.setLabels(outcomeLabels, predLabels);
numPreds = predLabels.length;
display("\tNumber of Event Tokens: " + numUniqueEvents + "\n");
display("\t Number of Outcomes: " + numOutcomes + "\n");
display("\t Number of Predicates: " + numPreds + "\n");
// set up feature arrays
float[][] predCount = new float[numPreds][numOutcomes];
for (int ti = 0; ti < numUniqueEvents; ti++) {
for (int j = 0; j < contexts[ti].length; j++) {
if (values != null && values[ti] != null) {
predCount[contexts[ti][j]][outcomeList[ti]] += numTimesEventsSeen[ti] * values[ti][j];
} else {
predCount[contexts[ti][j]][outcomeList[ti]] += numTimesEventsSeen[ti];
}
}
}
// printTable(predCount);
di = null; // don't need it anymore
// A fake "observation" to cover features which are not detected in
// the data. The default is to assume that we observed "1/10th" of a
// feature during training.
final double smoothingObservation = _smoothingObservation;
// Get the observed expectations of the features. Strictly speaking,
// we should divide the counts by the number of Tokens, but because of
// the way the model's expectations are approximated in the
// implementation, this is cancelled out when we compute the next
// iteration of a parameter, making the extra divisions wasteful.
params = new MutableContext[numPreds];
for (int i = 0; i < modelExpects.length; i++)
modelExpects[i] = new MutableContext[numPreds];
observedExpects = new MutableContext[numPreds];
// The model does need the correction constant and the correction feature.
// The correction constant
// is only needed during training, and the correction feature is not
// necessary.
// For compatibility reasons the model contains form now on a correction
// constant of 1,
// and a correction param 0.
evalParams = new EvalParameters(params, 0, 1, numOutcomes);
int[] activeOutcomes = new int[numOutcomes];
int[] outcomePattern;
int[] allOutcomesPattern = new int[numOutcomes];
for (int oi = 0; oi < numOutcomes; oi++) {
allOutcomesPattern[oi] = oi;
}
int numActiveOutcomes = 0;
for (int pi = 0; pi < numPreds; pi++) {
numActiveOutcomes = 0;
if (useSimpleSmoothing) {
numActiveOutcomes = numOutcomes;
outcomePattern = allOutcomesPattern;
} else { // determine active outcomes
for (int oi = 0; oi < numOutcomes; oi++) {
if (predCount[pi][oi] > 0 && predicateCounts[pi] >= cutoff) {
activeOutcomes[numActiveOutcomes] = oi;
numActiveOutcomes++;
}
}
if (numActiveOutcomes == numOutcomes) {
outcomePattern = allOutcomesPattern;
} else {
outcomePattern = new int[numActiveOutcomes];
for (int aoi = 0; aoi < numActiveOutcomes; aoi++) {
outcomePattern[aoi] = activeOutcomes[aoi];
}
}
}
params[pi] = new MutableContext(outcomePattern, new double[numActiveOutcomes]);
for (int i = 0; i < modelExpects.length; i++)
modelExpects[i][pi] = new MutableContext(outcomePattern, new double[numActiveOutcomes]);
observedExpects[pi] = new MutableContext(outcomePattern, new double[numActiveOutcomes]);
for (int aoi = 0; aoi < numActiveOutcomes; aoi++) {
int oi = outcomePattern[aoi];
params[pi].setParameter(aoi, 0.0);
for (int i = 0; i < modelExpects.length; i++)
modelExpects[i][pi].setParameter(aoi, 0.0);
if (predCount[pi][oi] > 0) {
observedExpects[pi].setParameter(aoi, predCount[pi][oi]);
} else if (useSimpleSmoothing) {
observedExpects[pi].setParameter(aoi, smoothingObservation);
}
}
}
predCount = null; // don't need it anymore
display("...done.\n");
/***************** Find the parameters ************************/
if (threads == 1)
display("Computing model parameters ...\n");
else
display("Computing model parameters in " + threads + " threads...\n");
findParameters(iterations, correctionConstant);
/*************** Create and return the model ******************/
// To be compatible with old models the correction constant is always 1
return new GISModel(params, predLabels, outcomeLabels, 1, evalParams.getCorrectionParam());
}
/* Estimate and return the model parameters. */
private void findParameters(int iterations, double correctionConstant) {
double prevLL = 0.0;
double currLL = 0.0;
display("Performing " + iterations + " iterations.\n");
for (int i = 1; i <= iterations; i++) {
if (i < 10)
display(" " + i + ": ");
else if (i < 100)
display(" " + i + ": ");
else
display(i + ": ");
currLL = nextIteration(correctionConstant);
if (i > 1) {
if (prevLL > currLL) {
LOG.error("Model Diverging: loglikelihood decreased");
break;
}
if (currLL - prevLL < LLThreshold) {
break;
}
}
prevLL = currLL;
}
// kill a bunch of these big objects now that we don't need them
observedExpects = null;
modelExpects = null;
numTimesEventsSeen = null;
contexts = null;
}
// modeled on implementation in Zhang Le's maxent kit
private double gaussianUpdate(int predicate, int oid, int n, double correctionConstant) {
double param = params[predicate].getParameters()[oid];
double x0 = 0.0;
double modelValue = modelExpects[0][predicate].getParameters()[oid];
double observedValue = observedExpects[predicate].getParameters()[oid];
for (int i = 0; i < 50; i++) {
double tmp = modelValue * Math.exp(correctionConstant * x0);
double f = tmp + (param + x0) / sigma - observedValue;
double fp = tmp * correctionConstant + 1 / sigma;
if (fp == 0) {
break;
}
double x = x0 - f / fp;
if (Math.abs(x - x0) < 0.000001) {
x0 = x;
break;
}
x0 = x;
}
return x0;
}
private class ModelExpactationComputeTask implements Callable {
private final int startIndex;
private final int length;
private double loglikelihood = 0;
private int numEvents = 0;
private int numCorrect = 0;
final private int threadIndex;
// startIndex to compute, number of events to compute
ModelExpactationComputeTask(int threadIndex, int startIndex, int length) {
this.startIndex = startIndex;
this.length = length;
this.threadIndex = threadIndex;
}
@Override
public ModelExpactationComputeTask call() {
final double[] modelDistribution = new double[numOutcomes];
for (int ei = startIndex; ei < startIndex + length; ei++) {
// TODO: check interruption status here, if interrupted set a poisoned
// flag and return
if (values != null) {
prior.logPrior(modelDistribution, contexts[ei], values[ei]);
GISModel.eval(contexts[ei], values[ei], modelDistribution, evalParams);
} else {
prior.logPrior(modelDistribution, contexts[ei]);
GISModel.eval(contexts[ei], modelDistribution, evalParams);
}
for (int j = 0; j < contexts[ei].length; j++) {
int pi = contexts[ei][j];
if (predicateCounts[pi] >= cutoff) {
int[] activeOutcomes = modelExpects[threadIndex][pi].getOutcomes();
for (int aoi = 0; aoi < activeOutcomes.length; aoi++) {
int oi = activeOutcomes[aoi];
// numTimesEventsSeen must also be thread safe
if (values != null && values[ei] != null) {
modelExpects[threadIndex][pi].updateParameter(aoi, modelDistribution[oi] * values[ei][j] * numTimesEventsSeen[ei]);
} else {
modelExpects[threadIndex][pi].updateParameter(aoi, modelDistribution[oi] * numTimesEventsSeen[ei]);
}
}
}
}
loglikelihood += Math.log(modelDistribution[outcomeList[ei]]) * numTimesEventsSeen[ei];
numEvents += numTimesEventsSeen[ei];
if (printMessages) {
int max = 0;
for (int oi = 1; oi < numOutcomes; oi++) {
if (modelDistribution[oi] > modelDistribution[max]) {
max = oi;
}
}
if (max == outcomeList[ei]) {
numCorrect += numTimesEventsSeen[ei];
}
}
}
return this;
}
synchronized int getNumEvents() {
return numEvents;
}
synchronized int getNumCorrect() {
return numCorrect;
}
synchronized double getLoglikelihood() {
return loglikelihood;
}
}
/* Compute one iteration of GIS and retutn log-likelihood. */
private double nextIteration(double correctionConstant) {
// compute contribution of p(a|b_i) for each feature and the new
// correction parameter
double loglikelihood = 0.0;
int numEvents = 0;
int numCorrect = 0;
int numberOfThreads = modelExpects.length;
ExecutorService executor = Executors.newFixedThreadPool(numberOfThreads);
int taskSize = numUniqueEvents / numberOfThreads;
int leftOver = numUniqueEvents % numberOfThreads;
List> futures = new ArrayList>();
for (int i = 0; i < numberOfThreads; i++) {
if (i != numberOfThreads - 1)
futures.add(executor.submit(new ModelExpactationComputeTask(i, i * taskSize, taskSize)));
else
futures.add(executor.submit(new ModelExpactationComputeTask(i, i * taskSize, taskSize + leftOver)));
}
for (Future future : futures) {
ModelExpactationComputeTask finishedTask = null;
try {
finishedTask = (ModelExpactationComputeTask) future.get();
} catch (InterruptedException e) {
// TODO: We got interrupted, but that is currently not really supported!
// For now we just print the exception and fail hard. We hopefully soon
// handle this case properly!
e.printStackTrace();
throw new IllegalStateException("Interruption is not supported!", e);
} catch (ExecutionException e) {
// Only runtime exception can be thrown during training, if one was
// thrown
// it should be re-thrown. That could for example be a
// NullPointerException
// which is caused through a bug in our implementation.
throw new RuntimeException(e.getCause());
}
// When they are done, retrieve the results ...
numEvents += finishedTask.getNumEvents();
numCorrect += finishedTask.getNumCorrect();
loglikelihood += finishedTask.getLoglikelihood();
}
executor.shutdown();
display(".");
// merge the results of the two computations
for (int pi = 0; pi < numPreds; pi++) {
int[] activeOutcomes = params[pi].getOutcomes();
for (int aoi = 0; aoi < activeOutcomes.length; aoi++) {
for (int i = 1; i < modelExpects.length; i++) {
modelExpects[0][pi].updateParameter(aoi, modelExpects[i][pi].getParameters()[aoi]);
}
}
}
display(".");
// compute the new parameter values
for (int pi = 0; pi < numPreds; pi++) {
double[] observed = observedExpects[pi].getParameters();
double[] model = modelExpects[0][pi].getParameters();
int[] activeOutcomes = params[pi].getOutcomes();
for (int aoi = 0; aoi < activeOutcomes.length; aoi++) {
if (useGaussianSmoothing) {
params[pi].updateParameter(aoi, gaussianUpdate(pi, aoi, numEvents, correctionConstant));
} else {
if (model[aoi] == 0) {
LOG.error("Model expects == 0 for " + predLabels[pi] + " " + outcomeLabels[aoi]);
}
// params[pi].updateParameter(aoi,(Math.log(observed[aoi]) -
// Math.log(model[aoi])));
params[pi].updateParameter(aoi, ((Math.log(observed[aoi]) - Math.log(model[aoi])) / correctionConstant));
}
for (int i = 0; i < modelExpects.length; i++)
modelExpects[i][pi].setParameter(aoi, 0.0); // re-initialize to 0.0's
}
}
display(". loglikelihood=" + loglikelihood + "\t" + ((double) numCorrect / numEvents) + "\n");
return loglikelihood;
}
private void display(String s) {
if (printMessages) {
currentMessage += s;
if (s.endsWith("\n")) {
LOG.debug(currentMessage.substring(0, currentMessage.length() - 1));
currentMessage = "";
}
}
}
}
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