com.kotmol.pdbParser.PdbBetaSheet.kt Maven / Gradle / Ivy

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Parser for RCSB PDB files
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/*
 *  Copyright 2020 James Andreas
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *       http://www.apache.org/licenses/LICENSE-2.0
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License
 */

@file:Suppress(
       "unused",
      /*  "unused_variable",
        "unused_parameter",
        "unused_property",
        "deprecation",
        "ConstantConditionIf",
        "LocalVariableName",
        "PropertyName"*/)
package com.kotmol.pdbParser

class PdbBetaSheet {

    var strandNumber: Int = 0
    var sheetIdentification: String? = null
    var numStrandsInSheet: Int = 0
    var initialResidueName: String? = null
    var initialChainIdChar: Char = ' '
    var initialResidueNumber: Int = 0
    var initialInsertionCodeChar: Char = ' '
    var terminalResidueName: String? = null
    var terminalChainIdChar: Char = ' '
    var terminalResidueNumber: Int = 0
    var terminalInsertionCodeChar: Char = ' '
    var parallelSenseCode: Int = 0  // see SENSE_CODE, pulled from PDB data (don't enum covert!)

    var registrationCurrentAtomName: String? = null
    var registrationCurrentResidueName: String? = null
    var registrationCurrentChainChar: Char = ' '
    var registrationCurrentSeqNumber: Int = 0
    var registrationCurrentInsertionCodeChar: Char = ' '

    var registrationPreviousAtomName: String? = null
    var registrationPreviousResidueName: String? = null
    var registrationPreviousChainChar: Char = ' '
    var registrationPreviousSeqNumber: Int = 0
    var registrationPreviousInsertionCodeChar: Char = ' '

    companion object {
        const val SENSE_CODE_FIRST_STRAND = 0
        const val SENSE_CODE_PARALLEL = 1
        const val SENSE_CODE_ANIT_PARALLEL = -1
    }
}