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Flux API for data movement with MarkLogic
/*
* Copyright © 2024 MarkLogic Corporation. All Rights Reserved.
*/
package com.marklogic.flux.impl.reprocess;
import com.marklogic.flux.api.FluxException;
import com.marklogic.flux.api.Reprocessor;
import com.marklogic.flux.impl.AbstractCommand;
import com.marklogic.flux.impl.OptionsUtil;
import com.marklogic.spark.Options;
import org.apache.spark.sql.*;
import picocli.CommandLine;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.List;
import java.util.Map;
import java.util.function.Consumer;
import java.util.function.Supplier;
import java.util.stream.Collectors;
import java.util.stream.Stream;
@CommandLine.Command(
name = "reprocess",
description = "Read any data from MarkLogic via custom code and reprocess it via custom code."
)
public class ReprocessCommand extends AbstractCommand implements Reprocessor {
@CommandLine.Mixin
protected ReadParams readParams = new ReadParams();
@CommandLine.Mixin
protected WriteParams writeParams = new WriteParams();
@Override
protected void validateDuringApiUsage() {
readParams.validateReader();
readParams.validatePartitionReader();
writeParams.validateWriter();
}
@Override
protected Dataset loadDataset(SparkSession session, DataFrameReader reader) {
return reader.format(MARKLOGIC_CONNECTOR)
.options(getConnectionParams().makeOptions())
.options(readParams.get())
.load();
}
@Override
protected void applyWriter(SparkSession session, DataFrameWriter writer) {
writer.format(MARKLOGIC_CONNECTOR)
.options(getConnectionParams().makeOptions())
.options(writeParams.get())
.mode(SaveMode.Append)
.save();
}
@Override
public void validateCommandLineOptions(CommandLine.ParseResult parseResult) {
super.validateCommandLineOptions(parseResult);
validateReadParams(parseResult);
validatePartitionParams(parseResult);
validateWriteParams(parseResult);
}
private void validateReadParams(CommandLine.ParseResult parseResult) {
String[] options = new String[]{
"--read-invoke", "--read-javascript", "--read-xquery", "--read-javascript-file", "--read-xquery-file"
};
if (getCountOfNonNullParams(parseResult, options) != 1) {
throw new FluxException(makeErrorMessage("Must specify one of ", options));
}
}
private void validatePartitionParams(CommandLine.ParseResult parseResult) {
String[] options = new String[]{
"--read-partitions-invoke", "--read-partitions-javascript", "--read-partitions-xquery",
"--read-partitions-javascript-file", "--read-partitions-xquery-file"
};
if (getCountOfNonNullParams(parseResult, options) > 1) {
throw new FluxException(makeErrorMessage("Can only specify one of ", options));
}
}
private void validateWriteParams(CommandLine.ParseResult parseResult) {
String[] options = new String[]{
"--write-invoke", "--write-javascript", "--write-xquery", "--write-javascript-file", "--write-xquery-file"
};
if (getCountOfNonNullParams(parseResult, options) != 1) {
throw new FluxException(makeErrorMessage("Must specify one of ", options));
}
}
private String makeErrorMessage(String preamble, String... args) {
List list = Arrays.asList(args);
String str = list.subList(0, list.size() - 1).stream().collect(Collectors.joining(", "));
return preamble + str + ", or " + list.get(list.size() - 1) + ".";
}
private int getCountOfNonNullParams(CommandLine.ParseResult parseResult, String... options) {
int count = 0;
for (String option : options) {
if (parseResult.subcommand().hasMatchedOption(option)) {
count++;
}
}
return count;
}
public static class ReadParams implements Supplier>, ReadOptions {
@CommandLine.Option(
names = {"--read-invoke"},
description = "The path to a module to invoke for reading data; the module must be in your application’s modules database."
)
private String readInvoke;
@CommandLine.Option(
names = {"--read-javascript"},
description = "JavaScript code to execute for reading data."
)
private String readJavascript;
@CommandLine.Option(
names = {"--read-javascript-file"},
description = "Local file containing JavaScript code to execute for reading data."
)
private String readJavascriptFile;
@CommandLine.Option(
names = {"--read-xquery"},
description = "XQuery code to execute for reading data."
)
private String readXquery;
@CommandLine.Option(
names = {"--read-xquery-file"},
description = "Local file containing XQuery code to execute for reading data."
)
private String readXqueryFile;
@CommandLine.Option(
names = {"--read-partitions-invoke"},
description = "The path to a module to invoke to define partitions that are sent to your custom code for reading; the module must be in your application’s modules database."
)
private String readPartitionsInvoke;
@CommandLine.Option(
names = {"--read-partitions-javascript"},
description = "JavaScript code to execute to define partitions that are sent to your custom code for reading."
)
private String readPartitionsJavascript;
@CommandLine.Option(
names = {"--read-partitions-javascript-file"},
description = "Local file containing JavaScript code to execute to define partitions that are sent to your custom code for reading."
)
private String readPartitionsJavascriptFile;
@CommandLine.Option(
names = {"--read-partitions-xquery"},
description = "XQuery code to execute to define partitions that are sent to your custom code for reading."
)
private String readPartitionsXquery;
@CommandLine.Option(
names = {"--read-partitions-xquery-file"},
description = "Local file containing XQuery code to execute to define partitions that are sent to your custom code for reading."
)
private String readPartitionsXqueryFile;
@CommandLine.Option(
names = "--read-var", arity = "*",
description = "Define variables to be sent to the code for reading data; e.g. '--read-var var1=value1'."
)
private List readVars = new ArrayList<>();
@CommandLine.Option(
names = "--log-read-progress",
description = "Log a count of total items read every time this many items are read."
)
private int progressInterval = 10000;
public void validateReader() {
Map options = get();
if (Stream.of(Options.READ_INVOKE, Options.READ_JAVASCRIPT, Options.READ_JAVASCRIPT_FILE,
Options.READ_XQUERY, Options.READ_XQUERY_FILE).noneMatch(options::containsKey)) {
throw new FluxException("Must specify either JavaScript code, XQuery code, or an invokable module for reading from MarkLogic");
}
}
public void validatePartitionReader() {
Map options = get();
long count = Stream.of(Options.READ_PARTITIONS_JAVASCRIPT, Options.READ_PARTITIONS_JAVASCRIPT_FILE,
Options.READ_PARTITIONS_XQUERY, Options.READ_PARTITIONS_XQUERY_FILE, Options.READ_PARTITIONS_INVOKE)
.filter(options::containsKey).count();
if (count > 1) {
throw new FluxException("Can only specify one approach for defining partitions that are sent to the code for reading from MarkLogic");
}
}
@Override
public Map get() {
Map options = OptionsUtil.makeOptions(
Options.READ_INVOKE, readInvoke,
Options.READ_JAVASCRIPT, readJavascript,
Options.READ_JAVASCRIPT_FILE, readJavascriptFile,
Options.READ_XQUERY, readXquery,
Options.READ_XQUERY_FILE, readXqueryFile,
Options.READ_PARTITIONS_INVOKE, readPartitionsInvoke,
Options.READ_PARTITIONS_JAVASCRIPT, readPartitionsJavascript,
Options.READ_PARTITIONS_JAVASCRIPT_FILE, readPartitionsJavascriptFile,
Options.READ_PARTITIONS_XQUERY, readPartitionsXquery,
Options.READ_PARTITIONS_XQUERY_FILE, readPartitionsXqueryFile,
Options.READ_LOG_PROGRESS, OptionsUtil.intOption(progressInterval)
);
if (readVars != null) {
readVars.forEach(readVar -> {
int pos = readVar.indexOf("=");
if (pos < 0) {
throw new IllegalArgumentException("Value of --read-var argument must be 'varName=varValue'; invalid value: " + readVar);
}
options.put(Options.READ_VARS_PREFIX + readVar.substring(0, pos), readVar.substring(pos + 1));
});
}
return options;
}
@Override
public ReadOptions invoke(String modulePath) {
this.readInvoke = modulePath;
return this;
}
@Override
public ReadOptions javascript(String query) {
this.readJavascript = query;
return this;
}
@Override
public ReadOptions javascriptFile(String path) {
this.readJavascriptFile = path;
return this;
}
@Override
public ReadOptions xquery(String query) {
this.readXquery = query;
return this;
}
@Override
public ReadOptions xqueryFile(String path) {
this.readXqueryFile = path;
return this;
}
@Override
public ReadOptions partitionsInvoke(String modulePath) {
this.readPartitionsInvoke = modulePath;
return this;
}
@Override
public ReadOptions partitionsJavascript(String query) {
this.readPartitionsJavascript = query;
return this;
}
@Override
public ReadOptions partitionsJavascriptFile(String path) {
this.readPartitionsJavascriptFile = path;
return this;
}
@Override
public ReadOptions partitionsXquery(String query) {
this.readPartitionsXquery = query;
return this;
}
@Override
public ReadOptions partitionsXqueryFile(String path) {
this.readPartitionsXqueryFile = path;
return this;
}
@Override
public ReadOptions vars(Map namesAndValues) {
this.readVars = namesAndValues.entrySet().stream()
.map(entry -> entry.getKey() + "=" + entry.getValue())
.collect(Collectors.toList());
return this;
}
@Override
public ReadOptions logProgress(int interval) {
this.progressInterval = interval;
return this;
}
}
public static class WriteParams implements Supplier>, WriteOptions {
@CommandLine.Option(
names = {"--write-invoke"},
description = "The path to a module to invoke for writing data; the module must be in your application’s modules database."
)
private String writeInvoke;
@CommandLine.Option(
names = {"--write-javascript"},
description = "JavaScript code to execute for writing data."
)
private String writeJavascript;
@CommandLine.Option(
names = {"--write-javascript-file"},
description = "Local file containing JavaScript code to execute for writing data."
)
private String writeJavascriptFile;
@CommandLine.Option(
names = {"--write-xquery"},
description = "XQuery code to execute for writing data."
)
private String writeXquery;
@CommandLine.Option(
names = {"--write-xquery-file"},
description = "Local file containing XQuery code to execute for writing data."
)
private String writeXqueryFile;
@CommandLine.Option(
names = {"--external-variable-name"},
description = "Name of the external variable in the custom code for writing that will be populated with each value read from MarkLogic."
)
private String externalVariableName = "URI";
@CommandLine.Option(
names = {"--external-variable-delimiter"},
description = "Delimiter used when multiple values are included in the external variable in the code for writing."
)
private String externalVariableDelimiter = ",";
@CommandLine.Option(
names = "--write-var", arity = "*",
description = "Define variables to be sent to the code for writing data; e.g. '--write-var var1=value1'."
)
private List writeVars = new ArrayList<>();
@CommandLine.Option(
names = "--abort-on-write-failure",
description = "Causes the command to fail when a batch of documents cannot be written to MarkLogic."
)
private boolean abortOnWriteFailure;
@CommandLine.Option(
names = "--batch-size",
description = "The number of values sent to the code for writing data in a single call."
)
private int batchSize = 1;
@CommandLine.Option(
names = "--log-progress",
description = "Log a count of total items processed every time this many items are processed."
)
private int progressInterval = 10000;
public void validateWriter() {
Map options = get();
if (Stream.of(Options.WRITE_INVOKE, Options.WRITE_JAVASCRIPT, Options.WRITE_JAVASCRIPT_FILE,
Options.WRITE_XQUERY, Options.WRITE_XQUERY_FILE).noneMatch(options::containsKey)) {
throw new FluxException("Must specify either JavaScript code, XQuery code, or an invokable module for writing to MarkLogic");
}
}
@Override
public Map get() {
Map options = OptionsUtil.makeOptions(
Options.WRITE_INVOKE, writeInvoke,
Options.WRITE_JAVASCRIPT, writeJavascript,
Options.WRITE_JAVASCRIPT_FILE, writeJavascriptFile,
Options.WRITE_XQUERY, writeXquery,
Options.WRITE_XQUERY_FILE, writeXqueryFile,
Options.WRITE_EXTERNAL_VARIABLE_NAME, externalVariableName,
Options.WRITE_EXTERNAL_VARIABLE_DELIMITER, externalVariableDelimiter,
Options.WRITE_ABORT_ON_FAILURE, abortOnWriteFailure ? "true" : "false",
Options.WRITE_BATCH_SIZE, OptionsUtil.intOption(batchSize),
Options.WRITE_LOG_PROGRESS, OptionsUtil.intOption(progressInterval)
);
if (writeVars != null) {
writeVars.forEach(writeVar -> {
int pos = writeVar.indexOf("=");
if (pos < 0) {
throw new IllegalArgumentException("Value of --write-var argument must be 'varName=varValue'; invalid value: " + writeVar);
}
options.put(Options.WRITE_VARS_PREFIX + writeVar.substring(0, pos), writeVar.substring(pos + 1));
});
}
return options;
}
@Override
public WriteOptions invoke(String modulePath) {
this.writeInvoke = modulePath;
return this;
}
@Override
public WriteOptions javascript(String query) {
this.writeJavascript = query;
return this;
}
@Override
public WriteOptions javascriptFile(String path) {
this.writeJavascriptFile = path;
return this;
}
@Override
public WriteOptions xquery(String query) {
this.writeXquery = query;
return this;
}
@Override
public WriteOptions xqueryFile(String path) {
this.writeXqueryFile = path;
return this;
}
@Override
public WriteOptions externalVariableName(String name) {
this.externalVariableName = name;
return this;
}
@Override
public WriteOptions externalVariableDelimiter(String delimiter) {
this.externalVariableDelimiter = delimiter;
return this;
}
@Override
public WriteOptions vars(Map namesAndValues) {
this.writeVars = namesAndValues.entrySet().stream()
.map(entry -> entry.getKey() + "=" + entry.getValue())
.collect(Collectors.toList());
return this;
}
@Override
public WriteOptions abortOnWriteFailure(boolean value) {
this.abortOnWriteFailure = value;
return this;
}
@Override
public WriteOptions batchSize(int batchSize) {
this.batchSize = batchSize;
return this;
}
@Override
public WriteOptions logProgress(int interval) {
this.progressInterval = interval;
return this;
}
}
@Override
public Reprocessor from(Consumer consumer) {
consumer.accept(readParams);
return this;
}
@Override
public Reprocessor to(Consumer consumer) {
consumer.accept(writeParams);
return this;
}
}
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