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/*
* Copyright (c) 2020 MarkLogic Corporation
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package com.marklogic.contentpump;
import java.io.IOException;
import java.nio.charset.Charset;
import java.util.Random;
import com.marklogic.contentpump.utilities.CommandlineOption;
import com.marklogic.http.HttpChannel;
import com.marklogic.contentpump.utilities.AuditUtil;
import org.apache.commons.cli.CommandLine;
import org.apache.commons.cli.HelpFormatter;
import org.apache.commons.cli.Option;
import org.apache.commons.cli.OptionBuilder;
import org.apache.commons.cli.Options;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;
import org.apache.hadoop.conf.Configuration;
import org.apache.hadoop.fs.Path;
import org.apache.hadoop.mapred.JobContext;
import org.apache.hadoop.mapreduce.Job;
import org.apache.hadoop.mapreduce.Mapper;
import org.apache.hadoop.mapreduce.OutputFormat;
import org.apache.hadoop.mapreduce.lib.input.FileInputFormat;
import com.marklogic.mapreduce.ContentType;
import com.marklogic.mapreduce.DocumentURI;
import com.marklogic.mapreduce.ForestInputFormat;
import com.marklogic.mapreduce.Indentation;
import com.marklogic.mapreduce.MarkLogicConstants;
import com.marklogic.mapreduce.MarkLogicDocument;
import com.marklogic.mapreduce.DatabaseDocument;
import com.marklogic.mapreduce.ForestDocument;
import com.marklogic.mapreduce.utilities.InternalUtilities;
import com.marklogic.xcc.ContentSource;
import com.marklogic.xcc.Session;
/**
* Enum of supported commands.
*
* @author jchen
*/
@SuppressWarnings("static-access")
public enum Command implements ConfigConstants {
IMPORT {
@Override
public void configOptions(Options options) {
configCommonOptions(options);
configConnectionId(options);
configCopyOptions(options);
configCommonOutputOptions(options);
configBatchTxn(options);
configModule(options);
configRDFGraphOutputOptions(options);
Option inputFilePath = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("The file system location for input, as a "
+ "regular expression")
.create(INPUT_FILE_PATH);
inputFilePath.setRequired(true);
options.addOption(inputFilePath);
Option inputFilePattern = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("Matching regex pattern for files found in "
+ "the input file path")
.create(INPUT_FILE_PATTERN);
options.addOption(inputFilePattern);
Option aggregateRecordElement = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("Element name in which each document is "
+ "found")
.create(AGGREGATE_RECORD_ELEMENT);
options.addOption(aggregateRecordElement);
Option aggregateRecordNamespace = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("Element namespace in which each document "
+ "is found")
.create(AGGREGATE_RECORD_NAMESPACE);
options.addOption(aggregateRecordNamespace);
Option aggregateUriId = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("Deprecated. Name of the first element or attribute "
+ "within a record element to be used as document URI."
+ " If omitted, a sequence id will be generated to "
+ " form the document URI.")
.create(AGGREGATE_URI_ID);
options.addOption(aggregateUriId);
Option inputFileType = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("Type of input file. Valid choices are: "
+ "aggregates, archive, delimited_text, documents, forest,"
+ "rdf, sequencefile, delimited_json")
.create(INPUT_FILE_TYPE);
options.addOption(inputFileType);
Option inputCompressed = OptionBuilder
.withArgName("true,false")
.hasOptionalArg()
.withDescription("Whether the input data is compressed")
.create(INPUT_COMPRESSED);
options.addOption(inputCompressed);
Option inputCompressionCodec = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("Codec used for compression: ZIP, GZIP")
.create(INPUT_COMPRESSION_CODEC);
options.addOption(inputCompressionCodec);
Option documentType = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("Type of document content. Valid choices: "
+ "XML, JSON, TEXT, BINARY, and MIXED. Default type for "
+ "document is MIXED, where the type is determined "
+ "from the MIME type mapping configured in MarkLogic "
+ "Server.")
.create(DOCUMENT_TYPE);
options.addOption(documentType);
Option delimiter = OptionBuilder
.withArgName("character")
.hasArg()
.withDescription("Delimiter for delimited text.")
.create(DELIMITER);
options.addOption(delimiter);
Option delimitedUri = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("Deprecated. Delimited uri id for delimited text.")
.create(DELIMITED_URI_ID);
options.addOption(delimitedUri);
Option delimitedRoot = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("Root element local name of the XML " +
"document constructed from one delimited text record.")
.create(DELIMITED_ROOT_NAME);
options.addOption(delimitedRoot);
Option generateUri = OptionBuilder
.withArgName("true,false")
.hasOptionalArg()
.withDescription("Enables automatic URI generation for " +
"delimited text records.")
.create(GENERATE_URI);
options.addOption(generateUri);
Option namespace = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("Namespace used for output document.")
.create(NAMESPACE);
options.addOption(namespace);
Option outputLanguage = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("Language name to associate with output "
+ "documents. A value of \"en\" indicates that the "
+ "documents are in english. The default is null, "
+ "which indicates the server default.")
.create(OUTPUT_LANGUAGE);
options.addOption(outputLanguage);
Option outputCleanDir = OptionBuilder
.withArgName("true,false")
.hasOptionalArg()
.withDescription("Whether to clean dir before output.")
.create(OUTPUT_CLEANDIR);
options.addOption(outputCleanDir);
Option outputDir = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("Output directory in MarkLogic.")
.create(OUTPUT_DIRECTORY);
options.addOption(outputDir);
Option outputFilenameCollection = OptionBuilder
.withArgName("true,false")
.hasOptionalArg()
.withDescription("Filename as collection in output.")
.create(OUTPUT_FILENAME_AS_COLLECTION);
options.addOption(outputFilenameCollection);
Option repairLevel = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("Whether to repair documents to make it well "
+ "formed or throw error.")
.create(XML_REPAIR_LEVEL);
options.addOption(repairLevel);
Option seqKeyClass = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("Name of class to be used as key to read the "
+ " input SequenceFile")
.create(INPUT_SEQUENCEFILE_KEY_CLASS);
options.addOption(seqKeyClass);
Option seqValueClass = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("Name of class to be used as value to read "
+ "the input SequenceFile")
.create(INPUT_SEQUENCEFILE_VALUE_CLASS);
options.addOption(seqValueClass);
Option seqValueType = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("Type of the value data returned by the above"
+ " class. Valid choices are: Text, BytesWritable, "
+ "MarkLogicDocument and Path.")
.create(INPUT_SEQUENCEFILE_VALUE_TYPE);
options.addOption(seqValueType);
Option allowEmptyMeta = OptionBuilder
.withArgName("true,false")
.hasOptionalArg()
.withDescription("Whether to allow empty metadata when "
+ "importing archive")
.create(ARCHIVE_METADATA_OPTIONAL);
options.addOption(allowEmptyMeta);
Option fastLoad = OptionBuilder
.withArgName("true,false")
.hasOptionalArg()
.withDescription("Whether to use the fast load mode to load "
+ "content into MarkLogic")
.create(FAST_LOAD);
options.addOption(fastLoad);
Option streaming = OptionBuilder
.withArgName("true,false")
.hasOptionalArg()
.withDescription("Whether to use streaming to output data to"
+ " MarkLogic")
.create(STREAMING);
options.addOption(streaming);
Option encoding = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription(
"The charset encoding to be used by the MarkLogic when "
+ "loading documents. The default is \"UTF-8\".")
.create(CONTENT_ENCODING);
options.addOption(encoding);
Option uriId = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("A column name in delimited text file "
+ "or an element name in aggregated XML "
+ "or a property name in delimited json, "
+ "whose value will be the document uri in MarkLogic Server.")
.create(URI_ID);
options.addOption(uriId);
Option dataType = OptionBuilder
.withArgName("comma list")
.hasArg()
.withDescription("Comma separated list of column name "
+ " and data type pairs. 1st to match column name,"
+ " case sensitive. 2nd the data type, case insensitive."
+ "Data type can be String, Number or Boolean.")
.create(DATA_TYPE);
options.addOption(dataType);
Option threadsPerSplit = OptionBuilder
.withArgName("number")
.hasArg()
.withDescription("The number of threads per split")
.create(THREADS_PER_SPLIT);
options.addOption(threadsPerSplit);
Option tolerateErrors_opt = OptionBuilder
.withArgName("true,false")
.hasOptionalArg()
.withDescription(
"Whether to tolerate insertion errors and make sure all "
+ "successful inserts are committed")
.create(TOLERATE_ERRORS);
CommandlineOption tolerateErrors = new CommandlineOption(tolerateErrors_opt);
tolerateErrors.setHidden(true);
options.addOption(tolerateErrors);
Option rdfMemoryThreshold_opt = OptionBuilder
.withArgName("number")
.hasArg()
.withDescription("Maximum size of an RDF document to be processed in memory")
.create(RDF_STREAMING_MEMORY_THRESHOLD);
CommandlineOption rdfMemoryThreshold = new CommandlineOption(rdfMemoryThreshold_opt);
rdfMemoryThreshold.setHidden(true);
options.addOption(rdfMemoryThreshold);
Option rdfTriplesPerDoc_opt = OptionBuilder
.withArgName("number")
.hasArg()
.withDescription("Maximum number of triples per sem:triples document")
.create(RDF_TRIPLES_PER_DOCUMENT);
CommandlineOption rdfTriplesPerDoc = new CommandlineOption(rdfTriplesPerDoc_opt);
rdfTriplesPerDoc.setHidden(true);
options.addOption(rdfTriplesPerDoc);
configPartition(options);
Option splitInput = OptionBuilder
.withArgName("true,false")
.hasOptionalArg()
.withDescription(
"Whether to split input files to load into MarkLogic. "
+ " Only available for delimited_text. Default is false.")
.create(SPLIT_INPUT);
options.addOption(splitInput);
Option df = OptionBuilder
.withArgName("comma list")
.hasArg()
.withDescription("Comma-separated list of directories")
.create(DIRECTORY_FILTER);
options.addOption(df);
Option cf = OptionBuilder
.withArgName("comma list")
.hasArg()
.withDescription("Comma-separated list of collections")
.create(COLLECTION_FILTER);
options.addOption(cf);
Option tf = OptionBuilder
.withArgName("comma list")
.hasArg()
.withDescription("Comma-separated list of document types")
.create(TYPE_FILTER);
options.addOption(tf);
Option tcf = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("temporal collection name")
.create(TEMPORAL_COLLECTION);
options.addOption(tcf);
}
@Override
public Job createJob(Configuration conf, CommandLine cmdline)
throws IOException {
applyConfigOptions(conf, cmdline);
InputType type = getInputType(cmdline);
type.applyConfigOptions(conf, cmdline);
// construct a job
Job job = LocalJob.getInstance(conf);
Class inputFormatClass =
conf.getClass(JobContext.INPUT_FORMAT_CLASS_ATTR, null);
if (inputFormatClass == null) {
job.setInputFormatClass(type.getInputFormatClass(cmdline, conf));
}
Class outputFormatClass =
conf.getClass(JobContext.OUTPUT_FORMAT_CLASS_ATTR, null);
if (outputFormatClass == null) {
job.setOutputFormatClass(type.getOutputFormatClass(cmdline, conf));
}
job.setJobName(getNewJobName(conf));
// set mapper class
Class mapperClass =
conf.getClass(JobContext.MAP_CLASS_ATTR, null);
if (mapperClass == null) {
setMapperClass(job, conf, cmdline);
}
if (cmdline.hasOption(INPUT_FILE_PATH)) {
String path = cmdline.getOptionValue(INPUT_FILE_PATH);
FileInputFormat.setInputPaths(job, path);
}
if (cmdline.hasOption(INPUT_FILE_PATTERN)) {
FileInputFormat.setInputPathFilter(job,
DocumentPathFilter.class);
}
return job;
}
void applyUriId(Configuration conf, InputType inputType, CommandLine cmdline) {
String uriId = null;
if (cmdline.hasOption(DELIMITED_URI_ID)) {
LOG.warn(DELIMITED_URI_ID + " has been depracated, use " + URI_ID);
uriId = cmdline.getOptionValue(DELIMITED_URI_ID);
}
if (cmdline.hasOption(AGGREGATE_URI_ID)) {
LOG.warn(AGGREGATE_URI_ID + " has been depracated, use " + URI_ID);
uriId = cmdline.getOptionValue(AGGREGATE_URI_ID);
}
if (cmdline.hasOption(URI_ID)) {
uriId = cmdline.getOptionValue(URI_ID);
}
String generate = null;
if (cmdline.hasOption(GENERATE_URI)) {
generate = cmdline.getOptionValue(GENERATE_URI);
if (generate == null) {
generate = "true";
}
if (!"true".equalsIgnoreCase(generate) &&
!"false".equalsIgnoreCase(generate)) {
throw new IllegalArgumentException(
"Unrecognized option argument for " +
GENERATE_URI + ": " + generate);
}
}
if (uriId != null) {
if (InputType.AGGREGATES == inputType ||
InputType.DELIMITED_JSON == inputType ||
InputType.DELIMITED_TEXT == inputType) {
conf.set(CONF_INPUT_URI_ID, uriId);
if (InputType.AGGREGATES != inputType &&
generate != null &&
"true".equalsIgnoreCase(generate)) {
throw new IllegalArgumentException("Only one of " + GENERATE_URI
+ " and " + URI_ID + " can be specified");
}
} else {
throw new IllegalArgumentException(
URI_ID +
" is not applicable to " + inputType.name());
}
} else {
if (InputType.DELIMITED_TEXT == inputType) {
if ("true".equalsIgnoreCase(generate)) {
conf.setBoolean(CONF_INPUT_GENERATE_URI, true);
}
} else if (InputType.DELIMITED_JSON == inputType) {
if (generate != null && "false".equalsIgnoreCase(generate)) {
throw new IllegalArgumentException(GENERATE_URI + " must be true if "
+ URI_ID + " not specified");
} else {
conf.setBoolean(CONF_INPUT_GENERATE_URI, true);
}
}
}
}
@Override
public void applyConfigOptions(Configuration conf, CommandLine cmdline) {
applyCopyConfigOptions(conf, cmdline);
applyCommonOutputConfigOptions(conf, cmdline);
applyRDFGraphOutputConfigOptions(conf, cmdline);
InputType inputType = getInputType(cmdline);
ContentType contentType = inputType.getContentType(cmdline);
if (InputType.DELIMITED_TEXT == inputType
&& ContentType.XML != contentType
&& contentType.JSON != contentType) {
throw new IllegalArgumentException("The setting for " + DOCUMENT_TYPE + "is not applicable to " + inputType);
}
applyUriId(conf, inputType, cmdline);
if (cmdline.hasOption(DOCUMENT_TYPE)
&& InputType.DOCUMENTS != inputType
&& InputType.DELIMITED_TEXT != inputType) {
LOG.warn(DOCUMENT_TYPE + " is not supported for " + inputType.name());
}
if (cmdline.hasOption(DATA_TYPE)) {
if (InputType.DELIMITED_TEXT != inputType) {
throw new IllegalArgumentException(DATA_TYPE + " is only applicable to "
+ InputType.DELIMITED_TEXT.name());
}
String type = cmdline.getOptionValue(DOCUMENT_TYPE,
ContentType.XML.name());
if ("XML".equalsIgnoreCase(type)) {
LOG.warn(DATA_TYPE + " is only applicable when "
+ DOCUMENT_TYPE + " is "
+ ContentType.JSON.name());
} else {
String value = cmdline.getOptionValue(DATA_TYPE);
String[] types = value.split(",");
if (types.length%2 != 0) {
throw new IllegalArgumentException("Invalid option argument for "
+ DATA_TYPE + ": " + value);
}
conf.set(CONF_DELIMITED_DATA_TYPE, value);
}
}
conf.set(MarkLogicConstants.CONTENT_TYPE, contentType.name());
if (ContentType.MIXED == contentType) {
LOG.info("Content type is set to MIXED. The format of the " +
" inserted documents will be determined by the MIME " +
" type specification configured on MarkLogic Server.");
} else {
LOG.info("Content type: " + contentType.name());
}
if (Command.isStreaming(cmdline, conf)) {
conf.setBoolean(MarkLogicConstants.OUTPUT_STREAMING, true);
}
if (cmdline.hasOption(ARCHIVE_METADATA_OPTIONAL)) {
String arg = cmdline.getOptionValue(
ARCHIVE_METADATA_OPTIONAL);
if (arg == null || arg.equalsIgnoreCase("true")) {
conf.setBoolean(CONF_INPUT_ARCHIVE_METADATA_OPTIONAL,
true);
} else if (arg.equalsIgnoreCase("false")) {
conf.setBoolean(CONF_INPUT_ARCHIVE_METADATA_OPTIONAL,
false);
} else {
throw new IllegalArgumentException(
"Unrecognized option argument for "
+ ARCHIVE_METADATA_OPTIONAL + ": "+ arg);
}
}
if (cmdline.hasOption(INPUT_COMPRESSION_CODEC)) {
String codec = cmdline.getOptionValue(INPUT_COMPRESSION_CODEC);
conf.set(CONF_INPUT_COMPRESSION_CODEC, codec.toUpperCase());
}
if (cmdline.hasOption(MAX_SPLIT_SIZE)) {
String maxSize = cmdline.getOptionValue(MAX_SPLIT_SIZE);
conf.set(CONF_MAX_SPLIT_SIZE1, maxSize);
conf.set(CONF_MAX_SPLIT_SIZE2, maxSize);
}
if (cmdline.hasOption(MIN_SPLIT_SIZE)) {
String minSize = cmdline.getOptionValue(MIN_SPLIT_SIZE);
conf.set(CONF_MIN_SPLIT_SIZE1, minSize);
conf.set(CONF_MIN_SPLIT_SIZE2, minSize);
}
if (cmdline.hasOption(AGGREGATE_RECORD_ELEMENT)) {
String recElem = cmdline.getOptionValue(
AGGREGATE_RECORD_ELEMENT);
conf.set(CONF_AGGREGATE_RECORD_ELEMENT, recElem);
}
if (cmdline.hasOption(AGGREGATE_RECORD_NAMESPACE)) {
String recNs = cmdline.getOptionValue(
AGGREGATE_RECORD_NAMESPACE);
conf.set(CONF_AGGREGATE_RECORD_NAMESPACE, recNs);
}
if (cmdline.hasOption(DELIMITER)) {
String delim = cmdline.getOptionValue(DELIMITER);
if (delim == null || delim.length() != 1) {
throw new IllegalArgumentException("Invalid delimiter: " +
delim);
}
conf.set(CONF_DELIMITER, delim);
}
if (cmdline.hasOption(DELIMITED_ROOT_NAME)) {
String type = cmdline.getOptionValue(DOCUMENT_TYPE,
ContentType.XML.name());
if ("JSON".equalsIgnoreCase(type)) {
LOG.warn(DELIMITED_ROOT_NAME
+ " is only applicable when "
+ DOCUMENT_TYPE + " is "
+ ContentType.XML.name());
} else {
String delimRoot = cmdline
.getOptionValue(DELIMITED_ROOT_NAME);
conf.set(CONF_DELIMITED_ROOT_NAME, delimRoot);
}
}
if (cmdline.hasOption(OUTPUT_FILENAME_AS_COLLECTION)) {
String arg = cmdline.getOptionValue(
OUTPUT_FILENAME_AS_COLLECTION);
if (arg == null || arg.equalsIgnoreCase("true")) {
conf.setBoolean(CONF_OUTPUT_FILENAME_AS_COLLECTION, true);
} else {
conf.setBoolean(CONF_OUTPUT_FILENAME_AS_COLLECTION, false);
}
}
if (cmdline.hasOption(OUTPUT_DIRECTORY)) {
String outDir = cmdline.getOptionValue(OUTPUT_DIRECTORY);
conf.set(MarkLogicConstants.OUTPUT_DIRECTORY, outDir);
}
if (cmdline.hasOption(OUTPUT_CLEANDIR)) {
String arg = cmdline.getOptionValue(OUTPUT_CLEANDIR);
if (arg == null || arg.equalsIgnoreCase("true")) {
conf.setBoolean(MarkLogicConstants.OUTPUT_CLEAN_DIR, true);
} else if (arg.equalsIgnoreCase("false")) {
conf.setBoolean(MarkLogicConstants.OUTPUT_CLEAN_DIR,
false);
} else {
throw new IllegalArgumentException(
"Unrecognized option argument for " +
OUTPUT_CLEANDIR + ": " + arg);
}
}
if (cmdline.hasOption(NAMESPACE)) {
String ns = cmdline.getOptionValue(NAMESPACE);
conf.set(MarkLogicConstants.OUTPUT_CONTENT_NAMESPACE, ns);
}
if (cmdline.hasOption(OUTPUT_LANGUAGE)) {
String language = cmdline.getOptionValue(OUTPUT_LANGUAGE);
conf.set(MarkLogicConstants.OUTPUT_CONTENT_LANGUAGE, language);
}
if (cmdline.hasOption(INPUT_FILE_PATTERN)) {
if (inputType == InputType.FOREST) {
LOG.warn("The setting for " + INPUT_FILE_PATTERN +
" is ignored for input type " + inputType.name());
} else {
String pattern =
cmdline.getOptionValue(INPUT_FILE_PATTERN);
conf.set(CONF_INPUT_FILE_PATTERN, pattern);
}
}
if (cmdline.hasOption(USERNAME)) {
String username = cmdline.getOptionValue(USERNAME);
conf.set(MarkLogicConstants.OUTPUT_USERNAME, username);
}
if (cmdline.hasOption(PASSWORD)) {
String password = cmdline.getOptionValue(PASSWORD);
conf.set(MarkLogicConstants.OUTPUT_PASSWORD, password);
}
String port = null;
if (cmdline.hasOption(PORT)) {
port = cmdline.getOptionValue(PORT);
conf.set(MarkLogicConstants.OUTPUT_PORT, port);
}
if (cmdline.hasOption(HOST)) {
String hosts = cmdline.getOptionValue(HOST);
InternalUtilities.verifyHosts(hosts, port==null?"8000":port);
conf.set(MarkLogicConstants.OUTPUT_HOST, hosts);
}
if (cmdline.hasOption(RESTRICT_HOSTS)) {
String restrict = cmdline.getOptionValue(RESTRICT_HOSTS);
if (restrict == null || "true".equalsIgnoreCase(restrict)) {
conf.setBoolean(MarkLogicConstants.OUTPUT_RESTRICT_HOSTS, true);
HttpChannel.setUseHTTP(true);
} else if (!"false".equalsIgnoreCase(restrict)) {
throw new IllegalArgumentException(
"Unrecognized option argument for " +
RESTRICT_OUTPUT_HOSTS + ": " + restrict);
}
} else { // use HTTP compliant mode to true for initial probing
HttpChannel.setUseHTTP(true);
}
if (cmdline.hasOption(DATABASE)) {
String db = cmdline.getOptionValue(DATABASE);
conf.set(MarkLogicConstants.OUTPUT_DATABASE_NAME, db);
}
if (cmdline.hasOption(SSL)) {
String arg = cmdline.getOptionValue(SSL);
if (arg == null || arg.equalsIgnoreCase("true")){
conf.set(MarkLogicConstants.OUTPUT_USE_SSL, "true");
} else if (!arg.equalsIgnoreCase("false")) {
throw new IllegalArgumentException(
"Unrecognized option argument for " + SSL
+ ": " + arg);
}
}
if (cmdline.hasOption(SSL_PROTOCOL)) {
String arg = cmdline.getOptionValue(SSL_PROTOCOL);
if (arg.equalsIgnoreCase("TLS")) {
conf.set(MarkLogicConstants.OUTPUT_SSL_PROTOCOL, "TLS");
} else if(arg.equalsIgnoreCase("TLSv1")) {
conf.set(MarkLogicConstants.OUTPUT_SSL_PROTOCOL, "TLSv1");
} else if(arg.equalsIgnoreCase("TLSv1.1")) {
conf.set(MarkLogicConstants.OUTPUT_SSL_PROTOCOL, "TLSv1.1");
} else if(arg.equalsIgnoreCase("TLSv1.2")) {
conf.set(MarkLogicConstants.OUTPUT_SSL_PROTOCOL, "TLSv1.2");
} else {
throw new IllegalArgumentException(
"Unrecognized option argument for " + SSL_PROTOCOL
+ ": " + arg);
}
}
if (cmdline.hasOption(TEMPORAL_COLLECTION)) {
String tempColl = cmdline.getOptionValue(TEMPORAL_COLLECTION);
conf.set(MarkLogicConstants.TEMPORAL_COLLECTION, tempColl);
}
String repairLevel = cmdline.getOptionValue(XML_REPAIR_LEVEL,
MarkLogicConstants.DEFAULT_OUTPUT_XML_REPAIR_LEVEL);
conf.set(MarkLogicConstants.OUTPUT_XML_REPAIR_LEVEL,
repairLevel.toUpperCase());
if (cmdline.hasOption(INPUT_SEQUENCEFILE_KEY_CLASS)) {
String keyClass = cmdline.getOptionValue(
INPUT_SEQUENCEFILE_KEY_CLASS);
conf.set(CONF_INPUT_SEQUENCEFILE_KEY_CLASS, keyClass);
}
if (cmdline.hasOption(INPUT_SEQUENCEFILE_VALUE_CLASS)) {
String valueClass = cmdline.getOptionValue(
INPUT_SEQUENCEFILE_VALUE_CLASS);
conf.set(CONF_INPUT_SEQUENCEFILE_VALUE_CLASS, valueClass);
}
if (cmdline.hasOption(INPUT_SEQUENCEFILE_VALUE_TYPE)) {
String valueType = cmdline.getOptionValue(
INPUT_SEQUENCEFILE_VALUE_TYPE,
DEFAULT_SEQUENCEFILE_VALUE_TYPE);
conf.set(CONF_INPUT_SEQUENCEFILE_VALUE_TYPE,
valueType.toUpperCase());
if (valueType.equalsIgnoreCase(
SequenceFileValueType.BYTESWRITABLE.toString())) {
conf.set(MarkLogicConstants.CONTENT_TYPE,
ContentType.BINARY.toString());
}
} else if (conf.get(CONF_INPUT_SEQUENCEFILE_VALUE_TYPE) == null) {
conf.set(CONF_INPUT_SEQUENCEFILE_VALUE_TYPE,
DEFAULT_SEQUENCEFILE_VALUE_TYPE);
}
if (cmdline.hasOption(INPUT_FILE_TYPE)) {
String fileType = cmdline.getOptionValue(INPUT_FILE_TYPE);
if (fileType.equalsIgnoreCase(InputType.ARCHIVE.toString())) {
conf.set(MarkLogicConstants.CONTENT_TYPE,
ContentType.UNKNOWN.toString());
}
}
if (cmdline.hasOption(FAST_LOAD)) {
String arg = cmdline.getOptionValue(FAST_LOAD);
if (arg == null || arg.equalsIgnoreCase("true")) {
conf.setBoolean(MarkLogicConstants.OUTPUT_FAST_LOAD, true);
LOG.info("Option fastload is specified.Please make sure "+
"that all conditions required to run in fastload "+
"mode are satisfied to avoid XDMP-DBDUPURI "+
"errors.");
} else if (arg.equalsIgnoreCase("false")) {
conf.setBoolean(MarkLogicConstants.OUTPUT_FAST_LOAD, false);
} else {
throw new IllegalArgumentException(
"Unrecognized option argument for " + FAST_LOAD
+ ": " + arg);
}
}
if (cmdline.hasOption(CONTENT_ENCODING)) {
String arg = cmdline.getOptionValue(CONTENT_ENCODING).toUpperCase();
if("SYSTEM".equals(arg)) {
arg = Charset.defaultCharset().name();
} else if (!Charset.isSupported(arg)) {
throw new IllegalArgumentException( arg
+ " encoding is not supported");
}
conf.set(MarkLogicConstants.OUTPUT_CONTENT_ENCODING, arg);
}
if (cmdline.hasOption(THREADS_PER_SPLIT)) {
String arg = cmdline.getOptionValue(THREADS_PER_SPLIT);
int threadCnt = Integer.parseInt(arg);
if (threadCnt > 1 && isStreaming(cmdline, conf)) {
LOG.warn("The setting for " + THREADS_PER_SPLIT +
" is ignored because streaming is enabled.");
} else if (threadCnt < inputType.getMinThreads()) {
throw new IllegalArgumentException("Cannot set " +
THREADS_PER_SPLIT +
" to a value less than the minimum required " +
" threads (" + inputType.getMinThreads() +
")for the job.");
} else {
conf.set(CONF_THREADS_PER_SPLIT, arg);
}
}
if (cmdline.hasOption(THREAD_COUNT)) {
String arg = cmdline.getOptionValue(THREAD_COUNT);
int threadCnt = Integer.parseInt(arg);
if (threadCnt < inputType.getMinThreads()) {
throw new IllegalArgumentException("Cannot set " +
THREAD_COUNT +
" to a value less than the minimum required " +
" threads (" + inputType.getMinThreads() +
")for the job.");
}
}
if (cmdline.hasOption(TEMPORAL_COLLECTION)) {
String fileType = cmdline.getOptionValue(INPUT_FILE_TYPE);
if (fileType != null &&
fileType.equalsIgnoreCase(InputType.RDF.toString())) {
throw new IllegalArgumentException(
"Cannot ingest RDF into temporal collection");
}
}
if (cmdline.hasOption(TOLERATE_ERRORS)) {
String arg = cmdline.getOptionValue(TOLERATE_ERRORS);
if (arg == null || arg.equalsIgnoreCase("true")) {
conf.setBoolean(MarkLogicConstants.OUTPUT_TOLERATE_ERRORS, true);
} else if (arg.equalsIgnoreCase("false")) {
conf.setBoolean(MarkLogicConstants.OUTPUT_TOLERATE_ERRORS, false);
} else {
throw new IllegalArgumentException(
"Unrecognized option argument for " + TOLERATE_ERRORS
+ ": " + arg);
}
}
applyPartitionConfigOptions(conf, cmdline);
applyModuleConfigOptions(conf, cmdline);
applyBatchTxn(conf, cmdline, MAX_BATCH_SIZE);
if (cmdline.hasOption(SPLIT_INPUT)) {
String arg = cmdline.getOptionValue(SPLIT_INPUT);
if (arg == null || arg.equalsIgnoreCase("true")) {
if (isInputCompressed(cmdline)) {
LOG.warn(INPUT_COMPRESSED + " disables " + SPLIT_INPUT);
conf.setBoolean(CONF_SPLIT_INPUT, false);
}
if (inputType != InputType.DELIMITED_TEXT) {
throw new IllegalArgumentException("The setting for " +
SPLIT_INPUT + " option is not supported for " +
inputType);
}
conf.setBoolean(CONF_SPLIT_INPUT, true);
} else if (arg.equalsIgnoreCase("false")) {
conf.setBoolean(CONF_SPLIT_INPUT, false);
} else {
throw new IllegalArgumentException(
"Unrecognized option argument for " + SPLIT_INPUT
+ ": " + arg);
}
}
if (cmdline.hasOption(COLLECTION_FILTER)) {
if (inputType == InputType.FOREST) {
String colFilter =
cmdline.getOptionValue(COLLECTION_FILTER);
conf.set(MarkLogicConstants.COLLECTION_FILTER, colFilter);
} else {
LOG.warn("The setting for " + COLLECTION_FILTER +
" is not applicable for " + inputType);
}
}
if (cmdline.hasOption(DIRECTORY_FILTER)) {
if (inputType == InputType.FOREST) {
String dirFilter =
cmdline.getOptionValue(DIRECTORY_FILTER);
conf.set(MarkLogicConstants.DIRECTORY_FILTER, dirFilter);
} else {
LOG.warn("The setting for " + DIRECTORY_FILTER +
" is not applicable for " + inputType);
}
}
if (cmdline.hasOption(TYPE_FILTER)) {
if (inputType == InputType.FOREST) {
String typeFilter =
cmdline.getOptionValue(TYPE_FILTER);
conf.set(MarkLogicConstants.TYPE_FILTER, typeFilter);
} else {
LOG.warn("The setting for " + TYPE_FILTER +
" is not applicable for " + inputType);
}
}
}
@Override
public void setMapperClass(Job job, Configuration conf,
CommandLine cmdline) {
String inputTypeOption = cmdline.getOptionValue(INPUT_FILE_TYPE,
INPUT_FILE_TYPE_DEFAULT);
InputType type = InputType.forName(inputTypeOption);
int minThreads = type.getMinThreads();
if (minThreads > 1) {
conf.setInt(CONF_MIN_THREADS, minThreads);
}
int threadCnt = conf.getInt(CONF_THREADS_PER_SPLIT, 1);
threadCnt = Math.max(threadCnt, minThreads);
Class> internalMapperClass =
type.getMapperClass(cmdline, conf);
if (threadCnt > 1 && !isStreaming(cmdline, conf)) {
job.setMapperClass(MultithreadedMapper.class);
MultithreadedMapper.setMapperClass(job.getConfiguration(),
internalMapperClass);
MultithreadedMapper.setNumberOfThreads(job, threadCnt);
} else {
// thread_count_per_split is not greater than 1
job.setMapperClass(internalMapperClass);
}
}
@SuppressWarnings("unchecked")
@Override
public Class> getRuntimeMapperClass(Job job,
Class> mapper, int threadCnt,
int availableThreads) {
if (threadCnt == 0 && availableThreads > 1 &&
!job.getConfiguration().getBoolean(
MarkLogicConstants.OUTPUT_STREAMING, false)) {
Class> mapperClass =
(Class>) (Class) MultithreadedMapper.class;
MultithreadedMapper.setMapperClass(job.getConfiguration(),
(Class>) mapper);
return mapperClass;
} else {
return mapper;
}
}
},
EXPORT {
@Override
public void configOptions(Options options) {
configCommonOptions(options);
configConnectionId(options);
configCopyOptions(options);
configFilteringOptions(options);
configRedactionOptions(options);
Option outputType = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("export output type")
.create(OUTPUT_TYPE);
options.addOption(outputType);
Option outputFilePath = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("export output file path")
.create(OUTPUT_FILE_PATH);
outputFilePath.setRequired(true);
options.addOption(outputFilePath);
Option exportCompress = OptionBuilder
.withArgName("true,false")
.hasOptionalArg()
.withDescription("Whether to compress the output document")
.create(OUTPUT_COMPRESS);
options.addOption(exportCompress);
Option exportIndented = OptionBuilder
.withArgName("true,false")
.hasOptionalArg()
.withDescription("Whether to format XML data with indentation")
.create(OUTPUT_INDENTED);
options.addOption(exportIndented);
Option snapshot = OptionBuilder
.withArgName("true,false")
.hasOptionalArg()
.withDescription("Whether to use a consistent timestamp to " +
"fetch data from the source database")
.create(SNAPSHOT);
options.addOption(snapshot);
Option encoding = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription(
"The charset encoding to be used by the MarkLogic when "
+ "exporting documents").create(CONTENT_ENCODING);
options.addOption(encoding);
}
@Override
public Job createJob(Configuration conf, CommandLine cmdline)
throws IOException {
applyConfigOptions(conf, cmdline);
String type = conf.get(CONF_OUTPUT_TYPE, DEFAULT_OUTPUT_TYPE);
ExportOutputType outputType = ExportOutputType.valueOf(
type.toUpperCase());
if (outputType.equals(ExportOutputType.DOCUMENT)) {
conf.set(MarkLogicConstants.INPUT_VALUE_CLASS,
DatabaseDocument.class.getCanonicalName());
}
if (cmdline.hasOption(SNAPSHOT)) {
String arg = cmdline.getOptionValue(SNAPSHOT);
if (arg == null || arg.equalsIgnoreCase("true")){
setQueryTimestamp(conf);
} else if (!arg.equalsIgnoreCase("false")) {
throw new IllegalArgumentException(
"Unrecognized option argument for " + SNAPSHOT
+ ": " + arg);
}
}
// construct a job
Job job = LocalJob.getInstance(conf);
job.setJarByClass(this.getClass());
Class inputFormatClass =
conf.getClass(JobContext.INPUT_FORMAT_CLASS_ATTR, null);
if (inputFormatClass == null) {
job.setInputFormatClass(outputType.getInputFormatClass());
}
Class mapperClass =
conf.getClass(JobContext.MAP_CLASS_ATTR, null);
if (mapperClass == null) {
setMapperClass(job, conf, cmdline);
}
Class mapOutputKeyClass =
conf.getClass(JobContext.MAP_OUTPUT_KEY_CLASS, null);
if (mapOutputKeyClass == null) {
job.setMapOutputKeyClass(DocumentURI.class);
}
Class mapOutputValueClass =
conf.getClass(JobContext.MAP_OUTPUT_VALUE_CLASS, null);
if (mapOutputValueClass == null) {
job.setMapOutputValueClass(MarkLogicDocument.class);
}
Class outputFormatClass =
conf.getClass(JobContext.OUTPUT_FORMAT_CLASS_ATTR, null);
if (outputFormatClass == null) {
job.setOutputFormatClass(
outputType.getOutputFormatClass(cmdline));
}
Class outputKeyClass =
conf.getClass(JobContext.OUTPUT_KEY_CLASS, null);
if (outputKeyClass == null) {
job.setOutputKeyClass(DocumentURI.class);
}
job.setJobName(getNewJobName(conf));
AuditUtil.prepareAuditMlcpStart(job, this.name(), cmdline);
return job;
}
@Override
public void applyConfigOptions(Configuration conf, CommandLine cmdline) {
applyCopyConfigOptions(conf, cmdline);
applyFilteringConfigOptions(conf, cmdline);
applyRedactionConfigOptions(conf, cmdline);
if (cmdline.hasOption(OUTPUT_TYPE)) {
String outputType = cmdline.getOptionValue(OUTPUT_TYPE);
conf.set(CONF_OUTPUT_TYPE, outputType);
}
if (cmdline.hasOption(OUTPUT_FILE_PATH)) {
String path = cmdline.getOptionValue(OUTPUT_FILE_PATH);
String wkdir = conf.get(CONF_MAPREDUCE_JOB_WORKING_DIR);
if (wkdir != null) {
path = new Path(wkdir, path).toString();
}
conf.set(CONF_OUTPUT_FILEPATH, path);
}
if (cmdline.hasOption(OUTPUT_INDENTED)) {
String isIndented = cmdline.getOptionValue(OUTPUT_INDENTED);
// check value validity
if (isIndented != null) {
Indentation indent = Indentation.forName(isIndented);
conf.set(MarkLogicConstants.INDENTED, indent.name());
}
}
String port = null;
if (cmdline.hasOption(PORT)) {
port = cmdline.getOptionValue(PORT);
conf.set(MarkLogicConstants.INPUT_PORT, port);
}
if (cmdline.hasOption(HOST)) {
String hosts = cmdline.getOptionValue(HOST);
InternalUtilities.verifyHosts(hosts, port==null?"8000":port);
conf.set(MarkLogicConstants.INPUT_HOST, hosts);
}
if (cmdline.hasOption(RESTRICT_HOSTS)) {
String restrict = cmdline.getOptionValue(RESTRICT_HOSTS);
if (restrict == null || "true".equalsIgnoreCase(restrict)) {
conf.setBoolean(MarkLogicConstants.INPUT_RESTRICT_HOSTS, true);
HttpChannel.setUseHTTP(true);
} else if (!"false".equalsIgnoreCase(restrict)) {
throw new IllegalArgumentException(
"Unrecognized option argument for " +
RESTRICT_INPUT_HOSTS + ": " + restrict);
}
} else { // use HTTP compliant mode to true for initial probing
HttpChannel.setUseHTTP(true);
}
if (cmdline.hasOption(USERNAME)) {
String user = cmdline.getOptionValue(USERNAME);
conf.set(MarkLogicConstants.INPUT_USERNAME, user);
}
if (cmdline.hasOption(PASSWORD)) {
String pswd = cmdline.getOptionValue(PASSWORD);
conf.set(MarkLogicConstants.INPUT_PASSWORD, pswd);
}
if (cmdline.hasOption(DATABASE)) {
String db = cmdline.getOptionValue(DATABASE);
conf.set(MarkLogicConstants.INPUT_DATABASE_NAME, db);
}
if (cmdline.hasOption(SSL)) {
String arg = cmdline.getOptionValue(SSL);
if (arg == null || arg.equalsIgnoreCase("true")){
conf.set(MarkLogicConstants.INPUT_USE_SSL, "true");
} else if (!arg.equalsIgnoreCase("false")) {
throw new IllegalArgumentException(
"Unrecognized option argument for " + SSL
+ ": " + arg);
}
}
if (cmdline.hasOption(SSL_PROTOCOL)) {
String arg = cmdline.getOptionValue(SSL_PROTOCOL);
if(arg.equalsIgnoreCase("TLS")) {
conf.set(MarkLogicConstants.INPUT_SSL_PROTOCOL, "TLS");
} else if(arg.equalsIgnoreCase("TLSv1")) {
conf.set(MarkLogicConstants.INPUT_SSL_PROTOCOL, "TLSv1");
} else if(arg.equalsIgnoreCase("TLSv1.1")) {
conf.set(MarkLogicConstants.INPUT_SSL_PROTOCOL, "TLSv1.1");
} else if(arg.equalsIgnoreCase("TLSv1.2")) {
conf.set(MarkLogicConstants.INPUT_SSL_PROTOCOL, "TLSv1.2");
} else {
throw new IllegalArgumentException(
"Unrecognized option argument for " + SSL_PROTOCOL
+ ": " + arg);
}
}
if (cmdline.hasOption(MAX_SPLIT_SIZE)) {
String maxSize = cmdline.getOptionValue(MAX_SPLIT_SIZE);
conf.set(MarkLogicConstants.MAX_SPLIT_SIZE, maxSize);
}
if (cmdline.hasOption(CONTENT_ENCODING)) {
String arg = cmdline.getOptionValue(CONTENT_ENCODING).toUpperCase();
if("SYSTEM".equals(arg)) {
arg = Charset.defaultCharset().name();
} else if (!Charset.isSupported(arg)) {
throw new IllegalArgumentException(arg
+ " encoding is not supported");
}
conf.set(MarkLogicConstants.OUTPUT_CONTENT_ENCODING, arg);
}
}
@Override
public void setMapperClass(Job job, Configuration conf,
CommandLine cmdline) {
job.setMapperClass(DocumentMapper.class);
}
@Override
public Class>
getRuntimeMapperClass(Job job,
Class> mapper, int threadCnt,
int availableThreads) {
return mapper;
}
},
COPY {
@Override
public void configOptions(Options options) {
configCommonOptions(options);
configCopyOptions(options);
configCommonOutputOptions(options);
configFilteringOptions(options);
configBatchTxn(options);
configModule(options);
configRedactionOptions(options);
Option inputUsername = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("User name of the input MarkLogic Server")
.create(INPUT_USERNAME);
options.addOption(inputUsername);
Option inputPassword = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("Password of the input MarkLogic Server")
.create(INPUT_PASSWORD);
options.addOption(inputPassword);
Option inputHost = OptionBuilder
.withArgName("comma list")
.hasArg()
.withDescription("Comma-separated list of hosts of the input "
+ "MarkLogic Server")
.create(INPUT_HOST);
inputHost.setRequired(true);
options.addOption(inputHost);
Option inputPort = OptionBuilder
.withArgName("number")
.hasArg()
.withDescription("Port of the input MarkLogic Server")
.create(INPUT_PORT);
options.addOption(inputPort);
Option inputDB = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("Database of the input MarkLogic Server")
.create(INPUT_DATABASE);
options.addOption(inputDB);
Option restrictInputHosts = OptionBuilder
.withArgName("true,false")
.hasOptionalArg()
.withDescription("Whether to restrict the input hosts mlcp connects to")
.create(RESTRICT_INPUT_HOSTS);
options.addOption(restrictInputHosts);
Option inputSSL = OptionBuilder
.withArgName("true,false")
.hasOptionalArg()
.withDescription(
"Use ssl to encrypt communication with input MarkLogic Server")
.create(INPUT_SSL);
options.addOption(inputSSL);
Option inputSSLProtocol = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription(
"Input ssl protocol, e.g. TLS, TLSv1.2")
.create(INPUT_SSL_PROTOCOL);
options.addOption(inputSSLProtocol);
Option outputUsername = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("User Name of the output MarkLogic Server")
.create(OUTPUT_USERNAME);
options.addOption(outputUsername);
Option outputPassword = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("Password of the output MarkLogic Server")
.create(OUTPUT_PASSWORD);
options.addOption(outputPassword);
Option outputHost = OptionBuilder
.withArgName("comma list")
.hasArg()
.withDescription("Comma-separated list of hosts of the output "
+ "MarkLogic Server")
.create(OUTPUT_HOST);
outputHost.setRequired(true);
options.addOption(outputHost);
Option outputPort = OptionBuilder
.withArgName("number")
.hasArg()
.withDescription("Port of the output MarkLogic Server")
.create(OUTPUT_PORT);
options.addOption(outputPort);
Option outputDB = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("Database of the output MarkLogic Server")
.create(OUTPUT_DATABASE);
options.addOption(outputDB);
Option restrictOutputHosts = OptionBuilder
.withArgName("true,fasle")
.hasOptionalArg()
.withDescription("Whether to the restrict output hosts mlcp connects to")
.create(RESTRICT_OUTPUT_HOSTS);
options.addOption(restrictOutputHosts);
Option outputSSL = OptionBuilder
.withArgName("true,false")
.hasOptionalArg()
.withDescription(
"Use ssl to encryt communication with the output MarkLogic Server")
.create(OUTPUT_SSL);
options.addOption(outputSSL);
Option outputSSLProtocol = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription(
"Output ssl protocol, e.g.TLS, TLSv1")
.create(OUTPUT_SSL_PROTOCOL);
options.addOption(outputSSLProtocol);
Option tcf = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("temporal collection name, used only" +
" for temporal documents")
.create(TEMPORAL_COLLECTION);
options.addOption(tcf);
Option fastLoad = OptionBuilder
.withArgName("true,false")
.hasOptionalArg()
.withDescription("Whether to use the fast load mode to load "
+ "content into MarkLogic")
.create(FAST_LOAD);
options.addOption(fastLoad);
Option outputDir = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("Output directory in MarkLogic.")
.create(OUTPUT_DIRECTORY);
options.addOption(outputDir);
Option tolerateErrors_opt = OptionBuilder
.withArgName("tolerate errors")
.hasOptionalArg()
.withDescription(
"Whether to tolerate insertion errors and make sure all "
+ "successful inserts are committed")
.create(TOLERATE_ERRORS);
CommandlineOption tolerateErrors = new CommandlineOption(tolerateErrors_opt);
tolerateErrors.setHidden(true);
options.addOption(tolerateErrors);
configPartition(options);
Option snapshot = OptionBuilder
.withArgName("true,false")
.hasOptionalArg()
.withDescription("Whether to use a consistent timestamp to " +
"fetch data from the source database")
.create(SNAPSHOT);
options.addOption(snapshot);
}
@Override
public Job createJob(Configuration conf, CommandLine cmdline)
throws IOException {
applyConfigOptions(conf, cmdline);
if (cmdline.hasOption(SNAPSHOT)) {
String arg = cmdline.getOptionValue(SNAPSHOT);
if (arg == null || arg.equalsIgnoreCase("true")){
setQueryTimestamp(conf);
} else if (!arg.equalsIgnoreCase("false")) {
throw new IllegalArgumentException(
"Unrecognized option argument for " + SNAPSHOT
+ ": " + arg);
}
}
Job job = LocalJob.getInstance(conf);
job.setJarByClass(this.getClass());
Class inputFormatClass =
conf.getClass(JobContext.INPUT_FORMAT_CLASS_ATTR, null);
if (inputFormatClass == null) {
job.setInputFormatClass(DatabaseContentInputFormat.class);
}
Class mapperClass =
conf.getClass(JobContext.MAP_CLASS_ATTR, null);
if (mapperClass == null) {
job.setMapperClass(DocumentMapper.class);
}
Class mapOutputKeyClass =
conf.getClass(JobContext.MAP_OUTPUT_KEY_CLASS, null);
if (mapOutputKeyClass == null) {
job.setMapOutputKeyClass(DocumentURI.class);
}
Class mapOutputValueClass =
conf.getClass(JobContext.MAP_OUTPUT_VALUE_CLASS, null);
if (mapOutputValueClass == null) {
job.setMapOutputValueClass(MarkLogicDocument.class);
}
Class outputFormatClass =
conf.getClass(JobContext.OUTPUT_FORMAT_CLASS_ATTR, null);
if (outputFormatClass == null) {
if(cmdline.hasOption(TRANSFORM_MODULE)) {
job.setOutputFormatClass(
DatabaseTransformOutputFormat.class);
} else {
job.setOutputFormatClass(
DatabaseContentOutputFormat.class);
}
}
Class outputKeyClass =
conf.getClass(JobContext.OUTPUT_KEY_CLASS, null);
if (outputKeyClass == null) {
job.setOutputKeyClass(DocumentURI.class);
}
job.setJobName(getNewJobName(conf));
AuditUtil.prepareAuditMlcpStart(job, this.name(), cmdline);
return job;
}
@Override
public void applyConfigOptions(Configuration conf, CommandLine cmdline) {
applyCopyConfigOptions(conf, cmdline);
applyFilteringConfigOptions(conf, cmdline);
applyCommonOutputConfigOptions(conf, cmdline);
applyRedactionConfigOptions(conf, cmdline);
if (cmdline.hasOption(OUTPUT_USERNAME)) {
String username = cmdline.getOptionValue(OUTPUT_USERNAME);
conf.set(MarkLogicConstants.OUTPUT_USERNAME, username);
}
if (cmdline.hasOption(OUTPUT_PASSWORD)) {
String password = cmdline.getOptionValue(OUTPUT_PASSWORD);
conf.set(MarkLogicConstants.OUTPUT_PASSWORD, password);
}
String outputPort = null;
if (cmdline.hasOption(OUTPUT_PORT)) {
outputPort = cmdline.getOptionValue(OUTPUT_PORT);
conf.set(MarkLogicConstants.OUTPUT_PORT, outputPort);
}
if (cmdline.hasOption(OUTPUT_HOST)) {
String outputHosts = cmdline.getOptionValue(OUTPUT_HOST);
InternalUtilities.verifyHosts(
outputHosts, outputPort==null?"8000":outputPort);
conf.set(MarkLogicConstants.OUTPUT_HOST, outputHosts);
}
if (cmdline.hasOption(OUTPUT_DATABASE)) {
String db = cmdline.getOptionValue(OUTPUT_DATABASE);
conf.set(MarkLogicConstants.OUTPUT_DATABASE_NAME, db);
}
if (cmdline.hasOption(RESTRICT_OUTPUT_HOSTS)) {
String restrict = cmdline.getOptionValue(RESTRICT_OUTPUT_HOSTS);
if (restrict == null || "true".equalsIgnoreCase(restrict)) {
conf.setBoolean(MarkLogicConstants.OUTPUT_RESTRICT_HOSTS, true);
HttpChannel.setUseHTTP(true);
} else if (!"false".equalsIgnoreCase(restrict)) {
throw new IllegalArgumentException(
"Unrecognized option argument for " +
RESTRICT_OUTPUT_HOSTS + ": " + restrict);
}
} else { // use HTTP compliant mode to true for initial probing
HttpChannel.setUseHTTP(true);
}
if (cmdline.hasOption(OUTPUT_SSL)) {
String arg = cmdline.getOptionValue(OUTPUT_SSL);
if (arg == null || arg.equalsIgnoreCase("true")){
conf.set(MarkLogicConstants.OUTPUT_USE_SSL, "true");
} else if (!arg.equalsIgnoreCase("false")) {
throw new IllegalArgumentException(
"Unrecognized option argument for " + OUTPUT_SSL
+ ": " + arg);
}
}
if (cmdline.hasOption(OUTPUT_SSL_PROTOCOL)) {
String arg = cmdline.getOptionValue(OUTPUT_SSL_PROTOCOL);
if (arg.equalsIgnoreCase("TLS")) {
conf.set(MarkLogicConstants.OUTPUT_SSL_PROTOCOL, "TLS");
} else if(arg.equalsIgnoreCase("TLSv1")) {
conf.set(MarkLogicConstants.OUTPUT_SSL_PROTOCOL, "TLSv1");
} else if(arg.equalsIgnoreCase("TLSv1.1")) {
conf.set(MarkLogicConstants.OUTPUT_SSL_PROTOCOL, "TLSv1.1");
} else if(arg.equalsIgnoreCase("TLSv1.2")) {
conf.set(MarkLogicConstants.OUTPUT_SSL_PROTOCOL, "TLSv1.2");
} else {
throw new IllegalArgumentException(
"Unrecognized option argument for " +
OUTPUT_SSL_PROTOCOL + ": " + arg);
}
}
if (cmdline.hasOption(INPUT_USERNAME)) {
String username = cmdline.getOptionValue(INPUT_USERNAME);
conf.set(MarkLogicConstants.INPUT_USERNAME, username);
}
if (cmdline.hasOption(INPUT_PASSWORD)) {
String password = cmdline.getOptionValue(INPUT_PASSWORD);
conf.set(MarkLogicConstants.INPUT_PASSWORD, password);
}
String inputPort = null;
if (cmdline.hasOption(INPUT_PORT)) {
inputPort = cmdline.getOptionValue(INPUT_PORT);
conf.set(MarkLogicConstants.INPUT_PORT, inputPort);
}
if (cmdline.hasOption(INPUT_HOST)) {
String inputHosts = cmdline.getOptionValue(INPUT_HOST);
InternalUtilities.verifyHosts(
inputHosts, inputPort==null?"8000":inputPort);
conf.set(MarkLogicConstants.INPUT_HOST, inputHosts);
}
if (cmdline.hasOption(INPUT_DATABASE)) {
String db = cmdline.getOptionValue(INPUT_DATABASE);
conf.set(MarkLogicConstants.INPUT_DATABASE_NAME, db);
}
if (cmdline.hasOption(RESTRICT_INPUT_HOSTS)) {
String restrict = cmdline.getOptionValue(RESTRICT_INPUT_HOSTS);
if (restrict == null || "true".equalsIgnoreCase(restrict)) {
conf.setBoolean(MarkLogicConstants.INPUT_RESTRICT_HOSTS, true);
HttpChannel.setUseHTTP(true);
} else if (!"false".equalsIgnoreCase(restrict)) {
throw new IllegalArgumentException(
"Unrecognized option argument for " +
RESTRICT_INPUT_HOSTS + ": " + restrict);
}
} else { // use HTTP compliant mode to true for initial probing
HttpChannel.setUseHTTP(true);
}
if (cmdline.hasOption(INPUT_SSL)) {
String arg = cmdline.getOptionValue(INPUT_SSL);
if (arg == null || arg.equalsIgnoreCase("true")){
conf.set(MarkLogicConstants.INPUT_USE_SSL, "true");
} else if (!arg.equalsIgnoreCase("false")) {
throw new IllegalArgumentException(
"Unrecognized option argument for " + INPUT_SSL
+ ": " + arg);
}
}
if (cmdline.hasOption(INPUT_SSL_PROTOCOL)) {
String arg = cmdline.getOptionValue(INPUT_SSL_PROTOCOL);
if (arg.equalsIgnoreCase("TLS")) {
conf.set(MarkLogicConstants.INPUT_SSL_PROTOCOL, "TLS");
} else if(arg.equalsIgnoreCase("TLSv1")) {
conf.set(MarkLogicConstants.INPUT_SSL_PROTOCOL, "TLSv1");
} else if(arg.equalsIgnoreCase("TLSv1.1")) {
conf.set(MarkLogicConstants.INPUT_SSL_PROTOCOL, "TLSv1.1");
} else if(arg.equalsIgnoreCase("TLSv1.2")) {
conf.set(MarkLogicConstants.INPUT_SSL_PROTOCOL, "TLSv1.2");
} else {
throw new IllegalArgumentException(
"Unrecognized option argument for " +
INPUT_SSL_PROTOCOL + ": " + arg);
}
}
if (cmdline.hasOption(TEMPORAL_COLLECTION)) {
String tempColl = cmdline.getOptionValue(TEMPORAL_COLLECTION);
conf.set(MarkLogicConstants.TEMPORAL_COLLECTION, tempColl);
}
if (cmdline.hasOption(MAX_SPLIT_SIZE)) {
String maxSize = cmdline.getOptionValue(MAX_SPLIT_SIZE);
conf.set(MarkLogicConstants.MAX_SPLIT_SIZE, maxSize);
}
if (cmdline.hasOption(FAST_LOAD)) {
String arg = cmdline.getOptionValue(FAST_LOAD);
if (arg == null || arg.equalsIgnoreCase("true")) {
conf.setBoolean(MarkLogicConstants.OUTPUT_FAST_LOAD, true);
} else {
conf.setBoolean(MarkLogicConstants.OUTPUT_FAST_LOAD,
false);
}
}
if (cmdline.hasOption(OUTPUT_DIRECTORY)) {
String outDir = cmdline.getOptionValue(OUTPUT_DIRECTORY);
conf.set(MarkLogicConstants.OUTPUT_DIRECTORY, outDir);
}
if (cmdline.hasOption(TOLERATE_ERRORS)) {
String arg = cmdline.getOptionValue(TOLERATE_ERRORS);
conf.set(MarkLogicConstants.OUTPUT_TOLERATE_ERRORS, arg);
}
if (cmdline.hasOption(TEMPORAL_COLLECTION)) {
InputType inputType = getInputType(cmdline);
String fileType = cmdline.getOptionValue(INPUT_FILE_TYPE);
ContentType contentType = inputType.getContentType(cmdline);
if (fileType != null &&
fileType.equalsIgnoreCase(InputType.RDF.toString())) {
throw new IllegalArgumentException(
"Cannot ingest RDF into temporal collection");
}
if (contentType != null && ContentType.BINARY == contentType) {
throw new IllegalArgumentException(
"Cannot ingest BINARY into temporal collection");
}
}
applyPartitionConfigOptions(conf, cmdline);
applyModuleConfigOptions(conf, cmdline);
applyBatchTxn(conf, cmdline, MAX_BATCH_SIZE);
}
@Override
public void setMapperClass(Job job, Configuration conf,
CommandLine cmdline) {
job.setMapperClass(DocumentMapper.class);
}
@Override
public Class> getRuntimeMapperClass(Job job,
Class> mapper, int threadCnt,
int availableThreads) {
return mapper;
}
},
EXTRACT {
@Override
public void applyConfigOptions(Configuration conf, CommandLine cmdline) {
if (cmdline.hasOption(OUTPUT_FILE_PATH)) {
String path = cmdline.getOptionValue(OUTPUT_FILE_PATH);
String wkdir = conf.get(CONF_MAPREDUCE_JOB_WORKING_DIR);
if (wkdir != null) {
path = new Path(wkdir, path).toString();
}
conf.set(CONF_OUTPUT_FILEPATH, path);
}
if (cmdline.hasOption(MIN_SPLIT_SIZE)) {
String minSize = cmdline.getOptionValue(MIN_SPLIT_SIZE);
conf.set(CONF_MIN_SPLIT_SIZE1, minSize);
conf.set(CONF_MIN_SPLIT_SIZE2, minSize);
}
if (cmdline.hasOption(MAX_SPLIT_SIZE)) {
String maxSize = cmdline.getOptionValue(MAX_SPLIT_SIZE);
conf.set(CONF_MAX_SPLIT_SIZE1, maxSize);
conf.set(CONF_MAX_SPLIT_SIZE2, maxSize);
}
if (cmdline.hasOption(COLLECTION_FILTER)) {
String colFilter = cmdline.getOptionValue(COLLECTION_FILTER);
conf.set(MarkLogicConstants.COLLECTION_FILTER, colFilter);
}
if (cmdline.hasOption(DIRECTORY_FILTER)) {
String dirFilter = cmdline.getOptionValue(DIRECTORY_FILTER);
conf.set(MarkLogicConstants.DIRECTORY_FILTER, dirFilter);
}
if (cmdline.hasOption(TYPE_FILTER)) {
String typeFilter = cmdline.getOptionValue(TYPE_FILTER);
conf.set(MarkLogicConstants.TYPE_FILTER, typeFilter);
}
}
@Override
public void configOptions(Options options) {
configCommonOptions(options);
Option inputFilePath = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("The file system location for input, as a "
+ "regular expression")
.create(INPUT_FILE_PATH);
inputFilePath.setRequired(true);
options.addOption(inputFilePath);
Option outputFilePath = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("export output file path")
.create(OUTPUT_FILE_PATH);
outputFilePath.setRequired(true);
options.addOption(outputFilePath);
Option exportCompress = OptionBuilder
.withArgName("true,false")
.hasOptionalArg()
.withDescription("Whether to compress the output document")
.create(OUTPUT_COMPRESS);
options.addOption(exportCompress);
Option df = OptionBuilder
.withArgName("comma list")
.hasArg()
.withDescription("Comma-separated list of directories")
.create(DIRECTORY_FILTER);
options.addOption(df);
Option cf = OptionBuilder
.withArgName("comma list")
.hasArg()
.withDescription("Comma-separated list of collections")
.create(COLLECTION_FILTER);
options.addOption(cf);
Option tf = OptionBuilder
.withArgName("comma list")
.hasArg()
.withDescription("Comma-separated list of document types")
.create(TYPE_FILTER);
options.addOption(tf);
}
@Override
public Job createJob(Configuration conf, CommandLine cmdline)
throws IOException {
applyConfigOptions(conf, cmdline);
// construct a job
Job job = LocalJob.getInstance(conf);
job.setInputFormatClass(ForestInputFormat.class);
Class outputFormatClass =
Command.isOutputCompressed(cmdline) ?
ArchiveOutputFormat.class :
SingleDocumentOutputFormat.class;
job.setOutputFormatClass(outputFormatClass);
setMapperClass(job, conf, cmdline);
job.setMapOutputKeyClass(DocumentURI.class);
job.setMapOutputValueClass(ForestDocument.class);
job.setJobName(getNewJobName(conf));
if (cmdline.hasOption(INPUT_FILE_PATH)) {
String path = cmdline.getOptionValue(INPUT_FILE_PATH);
FileInputFormat.setInputPaths(job, path);
}
return job;
}
@Override
public Class> getRuntimeMapperClass(
Job job, Class> mapper,
int threadCnt, int availableThreads) {
return mapper;
}
@Override
public void setMapperClass(Job job, Configuration conf,
CommandLine cmdline) {
job.setMapperClass(DocumentMapper.class);
}
};
public static final Log LOG = LogFactory.getLog(LocalJobRunner.class);
private static int jobid = 0;
private static Random rand = new Random();
public static Command forName(String cmd) {
if (cmd.equalsIgnoreCase(IMPORT.name())) {
return IMPORT;
} else if (cmd.equalsIgnoreCase(EXPORT.name())) {
return EXPORT;
} else if (cmd.equalsIgnoreCase(COPY.name())) {
return COPY;
} else if (cmd.equalsIgnoreCase(EXTRACT.name())) {
return EXTRACT;
} else {
throw new IllegalArgumentException("Unknown command: " + cmd);
}
}
protected static boolean isInputCompressed(CommandLine cmdline) {
if (cmdline.hasOption(INPUT_COMPRESSED)) {
String isCompress = cmdline.getOptionValue(INPUT_COMPRESSED);
if (isCompress == null || isCompress.equalsIgnoreCase("true")) {
return true;
}
}
return false;
}
protected static boolean isOutputCompressed(CommandLine cmdline) {
if (cmdline.hasOption(OUTPUT_COMPRESS)) {
String isCompress = cmdline.getOptionValue(OUTPUT_COMPRESS);
if (isCompress == null || isCompress.equalsIgnoreCase("true")) {
return true;
}
}
return false;
}
protected static boolean isStreaming(CommandLine cmdline,
Configuration conf) {
if (conf.get(MarkLogicConstants.OUTPUT_STREAMING) != null) {
return conf.getBoolean(MarkLogicConstants.OUTPUT_STREAMING, false);
}
String arg = null;
if (cmdline.hasOption(STREAMING)) {
arg = cmdline.getOptionValue(STREAMING);
if (arg == null || arg.equalsIgnoreCase("true")) {
InputType inputType = getInputType(cmdline);
if (inputType != InputType.DOCUMENTS) {
LOG.warn("Streaming option is not applicable to input " +
"type " + inputType);
conf.setBoolean(MarkLogicConstants.OUTPUT_STREAMING, false);
return false;
} else {
conf.setBoolean(MarkLogicConstants.OUTPUT_STREAMING, true);
return true;
}
}
}
conf.setBoolean(MarkLogicConstants.OUTPUT_STREAMING, false);
return false;
}
/**
* Add supported config options.
*
* @param options
*/
public abstract void configOptions(Options options);
/**
* Create a job based on Hadoop configuration and options.
*
* @param conf
* Hadoop configuration
* @param options
* options
* @return a Hadoop job
* @throws Exception
*/
public abstract Job createJob(Configuration conf, CommandLine cmdline)
throws IOException;
/**
* Apply config options set from the command-line to the configuration.
*
* @param conf
* configuration
* @param cmdline
* command line options
*/
public abstract void applyConfigOptions(Configuration conf,
CommandLine cmdline);
/**
* Set Mapper class for a job. If the minimum threads required is more
* than 1 and threads_per_split is not set, also set the minimum threads in
* the configuration for the job scheduler.
*
* @param job the Hadoop job
* @param conf Hadoop configuration
* @param CommandLine command line
*/
public abstract void setMapperClass(Job job, Configuration conf,
CommandLine cmdline);
public abstract Class> getRuntimeMapperClass(
Job job, Class> mapper, int threadCnt,
int availableThreads);
static void setQueryTimestamp(Configuration conf)
throws IOException {
try {
ContentSource cs = InternalUtilities.getInputContentSource(conf);
Session session = cs.newSession();
conf.set(MarkLogicConstants.INPUT_QUERY_TIMESTAMP,
session.getCurrentServerPointInTime().toString());
} catch (Exception ex) {
throw new IOException("Error getting query timestamp", ex);
}
}
static void configRedactionOptions(Options options) {
Option redaction = OptionBuilder
.withArgName("comma list")
.hasArg()
.withDescription("Comma separated list of redaction rule collection URIs")
.create(REDACTION);
options.addOption(redaction);
}
static void configCommonOptions(Options options) {
Option mode = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("Whether to run in local or distributed mode.")
.create(MODE);
options.addOption(mode);
Option hadoopConfDir = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("Override $HADOOP_CONF_DIR")
.create(HADOOP_CONF_DIR);
options.addOption(hadoopConfDir);
Option threadCount = OptionBuilder
.withArgName("number")
.hasArg()
.withDescription("Number of threads")
.create(THREAD_COUNT);
options.addOption(threadCount);
Option maxSplitSize = OptionBuilder
.withArgName("number")
.hasArg()
.withDescription("Maximum number of MarkLogic documents per each "
+ "input split in export or copy, or maximum number of "
+ "bytes in file per each split in import")
.create(MAX_SPLIT_SIZE);
options.addOption(maxSplitSize);
Option minSplitSize = OptionBuilder
.withArgName("number")
.hasArg()
.withDescription("Minimum number of bytes in file per each split "
+ "in import")
.create(MIN_SPLIT_SIZE);
options.addOption(minSplitSize);
}
static void configRDFGraphOutputOptions(Options options) {
Option outputGraph = OptionBuilder.withArgName("string").hasArg()
.withDescription("Default graph for quad").create(OUTPUT_GRAPH);
options.addOption(outputGraph);
Option outputOverrideGraph = OptionBuilder.withArgName("string")
.hasArg().withDescription("Graph overrided for quad")
.create(OUTPUT_OVERRIDE_GRAPH);
options.addOption(outputOverrideGraph);
}
static void configCommonOutputOptions(Options options) {
Option outputUriReplace = OptionBuilder
.withArgName("comma list")
.hasArg()
.withDescription("Comma separated list of regex pattern and "
+ "string pairs, 1st to match a uri segment, 2nd the "
+ "string to replace with, with the 2nd one in ''")
.create(OUTPUT_URI_REPLACE);
options.addOption(outputUriReplace);
Option outputUriPrefix = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("String to prepend to all document URIs")
.create(OUTPUT_URI_PREFIX);
options.addOption(outputUriPrefix);
Option outputUriSuffix = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("String to append to all document URIs")
.create(OUTPUT_URI_SUFFIX);
options.addOption(outputUriSuffix);
Option outputCollections = OptionBuilder
.withArgName("comma list")
.hasArg()
.withDescription("Comma separated list of collection to be applied"
+ " to output documents")
.create(OUTPUT_COLLECTIONS);
options.addOption(outputCollections);
Option outputPermissions = OptionBuilder
.withArgName("comma list")
.hasArg()
.withDescription("Comma separated list of user-privilege pairs to "
+ "be applied to output documents")
.create(OUTPUT_PERMISSIONS);
options.addOption(outputPermissions);
Option outputQuantity = OptionBuilder
.withArgName("number")
.hasArg()
.withDescription("Quality to be applied to output documents")
.create(OUTPUT_QUALITY);
options.addOption(outputQuantity);
}
static void configConnectionId(Options options) {
Option username = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("User name of MarkLogic Server")
.create(USERNAME);
options.addOption(username);
Option password = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("Password of MarkLogic Server")
.create(PASSWORD);
options.addOption(password);
Option host = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("Comma-separated list of hosts of MarkLogic Server")
.create(HOST);
host.setRequired(true);
options.addOption(host);
Option port = OptionBuilder
.withArgName("number")
.hasArg()
.withDescription("Port of MarkLogic Server")
.create(PORT);
options.addOption(port);
Option db = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("Database of MarkLogic Server")
.create(DATABASE);
options.addOption(db);
Option restricHosts = OptionBuilder
.withArgName("true,false")
.hasOptionalArg()
.withDescription("Whether to restrict the hosts mlcp connects to")
.create(RESTRICT_HOSTS);
options.addOption(restricHosts);
Option ssl = OptionBuilder
.withArgName("true,false")
.hasOptionalArg()
.withDescription("Use SSL for encryted communication")
.create(SSL);
options.addOption(ssl);
Option ssl_protocol = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("SSL protocol, e.g. TLS, TLSv1")
.create(SSL_PROTOCOL);
options.addOption(ssl_protocol);
}
static void configCopyOptions(Options options) {
Option cpcol = OptionBuilder
.withArgName("true,false")
.hasOptionalArg()
.withDescription("Whether to copy document collections from source"
+ " to destination")
.create(COPY_COLLECTIONS);
options.addOption(cpcol);
Option cppm = OptionBuilder
.withArgName("true,false")
.hasOptionalArg()
.withDescription("Whether to copy document permissions from source"
+ " to destination")
.create(COPY_PERMISSIONS);
options.addOption(cppm);
Option cppt = OptionBuilder
.withArgName("true,false")
.hasOptionalArg()
.withDescription("Whether to copy document properties from source"
+ " to destination")
.create(COPY_PROPERTIES);
options.addOption(cppt);
Option cpqt = OptionBuilder
.withArgName("true,false")
.hasOptionalArg()
.withDescription("Whether to copy document quality from source"
+ " to destination")
.create(COPY_QUALITY);
options.addOption(cpqt);
Option cpmeta = OptionBuilder
.withArgName("true,false")
.hasOptionalArg()
.withDescription("Whether to copy document metadata from source"
+ " to destination")
.create(COPY_METADATA);
options.addOption(cpmeta);
}
static void configBatchTxn(Options options) {
Option batchSize = OptionBuilder
.withArgName("number")
.hasArg()
.withDescription(
"Number of documents in one request (default 100)")
.create(BATCH_SIZE);
options.addOption(batchSize);
Option txnSize = OptionBuilder
.withArgName("number")
.hasArg()
.withDescription(
"Number of requests in one transaction (default 1)")
.create(TRANSACTION_SIZE);
options.addOption(txnSize);
}
static void configModule(Options options) {
Option moduleUri = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription(
"Path to the module containing the transform function")
.create(TRANSFORM_MODULE);
options.addOption(moduleUri);
Option ns = OptionBuilder.withArgName("string").hasArg()
.withDescription("Namespace of the transform function")
.create(TRANSFORM_NAMESPACE);
options.addOption(ns);
Option func = OptionBuilder.withArgName("string").hasArg()
.withDescription("Name of the transform function")
.create(TRANSFORM_FUNCTION);
options.addOption(func);
Option param = OptionBuilder.withArgName("string").hasArg()
.withDescription("Parameters of the transform function")
.create(TRANSFORM_PARAM);
options.addOption(param);
Option modules = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("The database that contains application modules")
.create(MODULES);
options.addOption(modules);
Option root = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("The root document directory pathname")
.create(MODULES_ROOT);
options.addOption(root);
}
static void configPartition(Options options) {
Option partition = OptionBuilder.withArgName("string")
.hasArg().withDescription("The partition where docs are inserted")
.create(OUTPUT_PARTITION);
options.addOption(partition);
}
static void configFilteringOptions(Options options) {
Option df = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("Comma-separated list of directories")
.create(DIRECTORY_FILTER);
options.addOption(df);
Option cf = OptionBuilder
.withArgName("comma list")
.hasArg()
.withDescription("Comma-separated list of collections")
.create(COLLECTION_FILTER);
options.addOption(cf);
Option ds = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("Path expression used to retrieve documents or " +
"element nodes from the server")
.create(DOCUMENT_SELECTOR);
options.addOption(ds);
Option ns = OptionBuilder
.withArgName("comma list")
.hasArg()
.withDescription("Comma-separated list of alias-URI bindings " +
"used in document_selector")
.create(PATH_NAMESPACE);
options.addOption(ns);
Option qf = OptionBuilder
.withArgName("string")
.hasArg()
.withDescription("cts query to retrieve documents with")
.create(QUERY_FILTER);
options.addOption(qf);
}
static void applyModuleConfigOptions(Configuration conf,
CommandLine cmdline) {
if (cmdline.hasOption(TRANSFORM_MODULE)) {
if (conf.getBoolean(MarkLogicConstants.OUTPUT_STREAMING, false) == true) {
throw new UnsupportedOperationException(
"Server-side transformation can't work with streaming");
}
String arg = cmdline.getOptionValue(TRANSFORM_MODULE);
conf.set(CONF_TRANSFORM_MODULE, arg);
if (cmdline.hasOption(TRANSFORM_NAMESPACE)) {
arg = cmdline.getOptionValue(TRANSFORM_NAMESPACE);
conf.set(CONF_TRANSFORM_NAMESPACE, arg);
}
if (cmdline.hasOption(TRANSFORM_FUNCTION)) {
arg = cmdline.getOptionValue(TRANSFORM_FUNCTION);
conf.set(CONF_TRANSFORM_FUNCTION, arg);
}
if (cmdline.hasOption(TRANSFORM_PARAM)) {
arg = cmdline.getOptionValue(TRANSFORM_PARAM);
conf.set(CONF_TRANSFORM_PARAM, arg);
}
if (cmdline.hasOption(MODULES)){
arg = cmdline.getOptionValue(MODULES);
conf.set(CONF_INPUT_MODULES_DATABASE, arg);
}
if (cmdline.hasOption(MODULES_ROOT)){
arg = cmdline.getOptionValue(MODULES_ROOT);
conf.set(CONF_INPUT_MODULES_ROOT, arg);
}
}
}
static void applyPartitionConfigOptions(Configuration conf,
CommandLine cmdline) {
if (cmdline.hasOption(OUTPUT_PARTITION)) {
String arg = cmdline.getOptionValue(OUTPUT_PARTITION);
conf.set(MarkLogicConstants.OUTPUT_PARTITION, arg);
}
}
static void applyCopyConfigOptions(Configuration conf, CommandLine cmdline) {
if (cmdline.hasOption(COPY_COLLECTIONS)) {
String arg = cmdline.getOptionValue(COPY_COLLECTIONS);
if (arg == null || arg.equalsIgnoreCase("true")) {
conf.setBoolean(MarkLogicConstants.COPY_COLLECTIONS, true);
} else if (arg.equalsIgnoreCase("false")) {
conf.setBoolean(MarkLogicConstants.COPY_COLLECTIONS, false);
} else {
throw new IllegalArgumentException(
"Unrecognized option argument for " + COPY_COLLECTIONS
+ ": " + arg);
}
} else {
conf.set(MarkLogicConstants.COPY_COLLECTIONS,
DEFAULT_COPY_COLLECTIONS);
}
if (cmdline.hasOption(COPY_PERMISSIONS)) {
String arg = cmdline.getOptionValue(COPY_PERMISSIONS);
if (arg == null || arg.equalsIgnoreCase("true")) {
conf.setBoolean(CONF_COPY_PERMISSIONS, true);
} else if (arg.equalsIgnoreCase("false")) {
conf.setBoolean(CONF_COPY_PERMISSIONS, false);
} else {
throw new IllegalArgumentException(
"Unrecognized option argument for " + COPY_PERMISSIONS
+ ": " + arg);
}
} else {
conf.set(CONF_COPY_PERMISSIONS, DEFAULT_COPY_PERMISSIONS);
}
if (cmdline.hasOption(COPY_PROPERTIES)) {
String arg = cmdline.getOptionValue(COPY_PROPERTIES);
if (arg == null || arg.equalsIgnoreCase("true")) {
conf.setBoolean(CONF_COPY_PROPERTIES, true);
} else {
conf.setBoolean(CONF_COPY_PROPERTIES, false);
}
} else {
conf.set(CONF_COPY_PROPERTIES, DEFAULT_COPY_PROPERTIES);
}
if (cmdline.hasOption(COPY_QUALITY)) {
String arg = cmdline.getOptionValue(COPY_QUALITY);
if (arg == null || arg.equalsIgnoreCase("true")) {
conf.setBoolean(MarkLogicConstants.COPY_QUALITY, true);
} else if (arg.equalsIgnoreCase("false")) {
conf.setBoolean(MarkLogicConstants.COPY_QUALITY, false);
} else {
throw new IllegalArgumentException(
"Unrecognized option argument for " + COPY_QUALITY
+ ": " + arg);
}
} else {
conf.set(MarkLogicConstants.COPY_QUALITY, DEFAULT_COPY_QUALITY);
}
if (cmdline.hasOption(COPY_METADATA)) {
String arg = cmdline.getOptionValue(COPY_METADATA);
if (arg == null || arg.equalsIgnoreCase("true")) {
conf.setBoolean(MarkLogicConstants.COPY_METADATA, true);
} else if (arg.equalsIgnoreCase("false")) {
conf.setBoolean(MarkLogicConstants.COPY_METADATA, false);
} else {
throw new IllegalArgumentException(
"Unrecognized option argument for " + COPY_METADATA
+ ": " + arg);
}
} else {
conf.set(MarkLogicConstants.COPY_METADATA, DEFAULT_COPY_METADATA);
}
}
static void applyFilteringConfigOptions(Configuration conf,
CommandLine cmdline) {
int filters = cmdline.hasOption(COLLECTION_FILTER) ? 1 : 0;
filters += cmdline.hasOption(DIRECTORY_FILTER) ? 1 : 0;
filters += cmdline.hasOption(DOCUMENT_SELECTOR) ? 1 : 0;
if (filters > 1) {
LOG.error("Only one of " + COLLECTION_FILTER + ", " +
DIRECTORY_FILTER + " and " +
DOCUMENT_SELECTOR +
" can be specified.");
throw new IllegalArgumentException(
"Only one of " + COLLECTION_FILTER + ", " +
DIRECTORY_FILTER + ", " + QUERY_FILTER + " and " +
DOCUMENT_SELECTOR +
" can be specified.");
}
if (cmdline.hasOption(COLLECTION_FILTER)) {
String c = cmdline.getOptionValue(COLLECTION_FILTER);
String[] cf = c.split(",");
if (cf.length > 1) {
StringBuilder sb = new StringBuilder("(");
for (int i = 0; i < cf.length; i++) {
if (i > 0) {
sb.append(",");
}
sb.append("\"");
sb.append(cf[i]);
sb.append("\"");
}
sb.append(")");
conf.set(MarkLogicConstants.COLLECTION_FILTER, sb.toString());
conf.set(MarkLogicConstants.DOCUMENT_SELECTOR,
"fn:collection(" + sb.toString() + ")");
} else {
conf.set(MarkLogicConstants.COLLECTION_FILTER, "\"" + c + "\"");
conf.set(MarkLogicConstants.DOCUMENT_SELECTOR,
"fn:collection(\"" + c + "\")");
}
}
if (cmdline.hasOption(DIRECTORY_FILTER)) {
String d = cmdline.getOptionValue(DIRECTORY_FILTER);
String[] df = d.split(",");
if (df.length > 1) {
StringBuilder sb = new StringBuilder("(");
for (int i = 0; i < df.length; i++) {
if (i > 0) {
sb.append(",");
}
if (!df[i].endsWith("/")) {
LOG.warn("directory_filter: Directory does not end "
+ "with a forward slash (/): " + df[i]);
}
sb.append("\"");
sb.append(df[i]);
sb.append("\"");
}
sb.append(")");
conf.set(MarkLogicConstants.DIRECTORY_FILTER, sb.toString());
conf.set(MarkLogicConstants.DOCUMENT_SELECTOR,
"xdmp:directory(" + sb.toString() + ",\"infinity\")");
} else {
if (!d.endsWith("/")) {
LOG.warn("directory_filter: Directory does not end "
+ "with a forward slash (/): " + d);
}
conf.set(MarkLogicConstants.DIRECTORY_FILTER, "\"" + d
+ "\"");
conf.set(MarkLogicConstants.DOCUMENT_SELECTOR,
"xdmp:directory(\"" + d + "\",\"infinity\")");
}
}
if (cmdline.hasOption(DOCUMENT_SELECTOR)) {
conf.set(MarkLogicConstants.DOCUMENT_SELECTOR,
cmdline.getOptionValue(DOCUMENT_SELECTOR));
}
if (cmdline.hasOption(PATH_NAMESPACE)) {
conf.set(MarkLogicConstants.PATH_NAMESPACE,
cmdline.getOptionValue(PATH_NAMESPACE));
}
if (cmdline.hasOption(QUERY_FILTER)) {
conf.set(MarkLogicConstants.QUERY_FILTER,
cmdline.getOptionValue(QUERY_FILTER));
}
}
static void applyBatchTxn(Configuration conf, CommandLine cmdline,
int maxBatch) {
String batchSize = cmdline.getOptionValue(BATCH_SIZE);
int batch;
if (batchSize != null) {
batch = Integer.decode(batchSize);
if (batch > maxBatch) {
LOG.warn("The setting for " + BATCH_SIZE +
" is changed to " + maxBatch);
batch = maxBatch;
}
} else {
batch = MarkLogicConstants.DEFAULT_BATCH_SIZE > maxBatch ?
maxBatch : MarkLogicConstants.DEFAULT_BATCH_SIZE;
}
conf.setInt(MarkLogicConstants.BATCH_SIZE, batch);
String txnSize = cmdline.getOptionValue(TRANSACTION_SIZE);
if (txnSize != null) {
int txn = Integer.decode(txnSize);
if (txn * batch > MAX_TXN_SIZE) {
txn = MAX_TXN_SIZE / batch;
LOG.warn("The setting for " + TRANSACTION_SIZE +
" is changed to " + txn);
}
conf.setInt(MarkLogicConstants.TXN_SIZE, txn);
}
}
static void applyRDFGraphOutputConfigOptions(Configuration conf,
CommandLine cmdline) {
if (cmdline.hasOption(OUTPUT_GRAPH) && cmdline.hasOption(OUTPUT_OVERRIDE_GRAPH)) {
throw new IllegalArgumentException(
"Only one of " + OUTPUT_GRAPH + ", " +
OUTPUT_OVERRIDE_GRAPH + " can be specified.");
}
if (cmdline.hasOption(OUTPUT_GRAPH)) {
String graph = cmdline.getOptionValue(OUTPUT_GRAPH);
conf.set(MarkLogicConstants.OUTPUT_GRAPH, graph);
}
if (cmdline.hasOption(OUTPUT_OVERRIDE_GRAPH)) {
String graph = cmdline.getOptionValue(OUTPUT_OVERRIDE_GRAPH);
conf.set(MarkLogicConstants.OUTPUT_OVERRIDE_GRAPH, graph);
}
}
static void applyRedactionConfigOptions(Configuration conf,
CommandLine cmdline) {
if (cmdline.hasOption(REDACTION)) {
String value = cmdline.getOptionValue(REDACTION);
conf.set(MarkLogicConstants.REDACTION_RULE_COLLECTION, value);
}
}
static void applyCommonOutputConfigOptions(Configuration conf,
CommandLine cmdline) {
if (cmdline.hasOption(OUTPUT_URI_REPLACE)) {
String uriReplace = cmdline.getOptionValue(OUTPUT_URI_REPLACE);
if (uriReplace == null) {
throw new IllegalArgumentException("Missing option argument: "
+ OUTPUT_URI_REPLACE);
} else {
String[] replace = uriReplace.split(",");
// URI replace comes in pattern and replacement pairs.
if (replace.length % 2 != 0) {
throw new IllegalArgumentException(
"Invalid option argument for "
+ OUTPUT_URI_REPLACE + " :" + uriReplace);
}
// Replacement string is expected to be in ''
for (int i = 0; i < replace.length - 1; i++) {
String replacement = replace[++i].trim();
if (!replacement.startsWith("'") ||
!replacement.endsWith("'")) {
throw new IllegalArgumentException(
"Invalid option argument for "
+ OUTPUT_URI_REPLACE + " :" + uriReplace);
}
}
conf.setStrings(MarkLogicConstants.OUTPUT_URI_REPLACE,
uriReplace);
}
}
if (cmdline.hasOption(OUTPUT_URI_PREFIX)) {
String outPrefix = cmdline.getOptionValue(OUTPUT_URI_PREFIX);
conf.set(MarkLogicConstants.OUTPUT_URI_PREFIX, outPrefix);
}
if (cmdline.hasOption(OUTPUT_URI_SUFFIX)) {
String outSuffix = cmdline.getOptionValue(OUTPUT_URI_SUFFIX);
conf.set(MarkLogicConstants.OUTPUT_URI_SUFFIX, outSuffix);
}
if (cmdline.hasOption(OUTPUT_COLLECTIONS)) {
String collectionsString = cmdline.getOptionValue(
OUTPUT_COLLECTIONS);
conf.set(MarkLogicConstants.OUTPUT_COLLECTION, collectionsString);
}
if (cmdline.hasOption(OUTPUT_PERMISSIONS)) {
String permissionString = cmdline.getOptionValue(
OUTPUT_PERMISSIONS);
conf.set(MarkLogicConstants.OUTPUT_PERMISSION, permissionString);
}
if (cmdline.hasOption(OUTPUT_QUALITY)) {
String quantity = cmdline.getOptionValue(OUTPUT_QUALITY);
conf.set(MarkLogicConstants.OUTPUT_QUALITY, quantity);
}
if (cmdline.hasOption(RDF_STREAMING_MEMORY_THRESHOLD)) {
String thresh = cmdline.getOptionValue(RDF_STREAMING_MEMORY_THRESHOLD);
conf.set(RDF_STREAMING_MEMORY_THRESHOLD, thresh);
}
if (cmdline.hasOption(RDF_TRIPLES_PER_DOCUMENT)) {
String count = cmdline.getOptionValue(RDF_TRIPLES_PER_DOCUMENT);
conf.set(RDF_TRIPLES_PER_DOCUMENT, count);
}
}
static InputType getInputType(CommandLine cmdline) {
String inputTypeOption = cmdline.getOptionValue(INPUT_FILE_TYPE,
INPUT_FILE_TYPE_DEFAULT);
return InputType.forName(inputTypeOption);
}
static String getNewJobName(Configuration conf) {
String mode = conf.get(MarkLogicConstants.EXECUTION_MODE,
MarkLogicConstants.MODE_LOCAL);
StringBuilder jobNameBuf = new StringBuilder();
jobNameBuf.append(mode);
jobNameBuf.append('_');
jobNameBuf.append(rand.nextInt(Integer.MAX_VALUE));
jobNameBuf.append('_');
jobNameBuf.append(++jobid);
return jobNameBuf.toString();
}
public void printUsage(Command cmd, Options options) {
HelpFormatter formatter = new HelpFormatter();
formatter.printHelp(HelpFormatter.DEFAULT_WIDTH,
cmd.name(), null, options, null, true);
}
}
