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    Download micommons JAR 1.0.3 with all dependencies


    Common tools for NGS (next-generation sequencing) data processing.

    Files of the artifact micommons version 1.0.3 from the group com.milaboratory.

    Test

    Download micommons (1.0.3)
    Artifact micommons
    Group com.milaboratory
    Version 1.0.3
    Last update 09. October 2013
    Organization not specified
    URL http://mitcr.milaboratory.com/
    License GNU General Public License, version 3
    Dependencies amount 4
    Dependencies pipe, jdom, commons-compress, commons-math,
    There are maybe transitive dependencies!
    The newest version!
    Show more of this group  Show more artifacts with this name
    Show all versions of micommons Show documentation

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    Source code of micommons version 1.0.3

    META-INF
    META-INF.META-INF.MANIFEST.MF
    com.milaboratory.core.sequence
    com.milaboratory.core.sequence.com.milaboratory.core.sequence.AbstractSequenceBuilder
    com.milaboratory.core.sequence.com.milaboratory.core.sequence.Alphabet
    com.milaboratory.core.sequence.com.milaboratory.core.sequence.NucleotideSQPair
    com.milaboratory.core.sequence.com.milaboratory.core.sequence.Sequence
    com.milaboratory.core.sequence.com.milaboratory.core.sequence.SequenceBuilder
    com.milaboratory.core.sequence.com.milaboratory.core.sequence.SequenceBuilderFactory
    com.milaboratory.core.sequence.com.milaboratory.core.sequence.SequencingErrorType
    com.milaboratory.core.sequence.aminoacid
    com.milaboratory.core.sequence.aminoacid.com.milaboratory.core.sequence.aminoacid.AbstractAASequenceBuilder
    com.milaboratory.core.sequence.aminoacid.com.milaboratory.core.sequence.aminoacid.AminoAcidAlphabet
    com.milaboratory.core.sequence.aminoacid.com.milaboratory.core.sequence.aminoacid.AminoAcidSequence
    com.milaboratory.core.sequence.aminoacid.com.milaboratory.core.sequence.aminoacid.AminoAcidSequenceImpl
    com.milaboratory.core.sequence.aminoacid.com.milaboratory.core.sequence.aminoacid.CDRAminoAcidAlphabet
    com.milaboratory.core.sequence.aminoacid.com.milaboratory.core.sequence.aminoacid.CDRAminoAcidSequence
    com.milaboratory.core.sequence.aminoacid.com.milaboratory.core.sequence.aminoacid.CDRTriplet
    com.milaboratory.core.sequence.aminoacid.com.milaboratory.core.sequence.aminoacid.Util
    com.milaboratory.core.sequence.motif
    com.milaboratory.core.sequence.motif.com.milaboratory.core.sequence.motif.LowQualityIndicator
    com.milaboratory.core.sequence.motif.com.milaboratory.core.sequence.motif.LowQualityIndicatorProvider
    com.milaboratory.core.sequence.motif.com.milaboratory.core.sequence.motif.NucleotideMotif
    com.milaboratory.core.sequence.motif.com.milaboratory.core.sequence.motif.NucleotideMotifBuilder
    com.milaboratory.core.sequence.motif.com.milaboratory.core.sequence.motif.NucleotideMotifSearchAdvanced
    com.milaboratory.core.sequence.motif.com.milaboratory.core.sequence.motif.NucleotideMotifSearchAdvancedWrapper
    com.milaboratory.core.sequence.motif.com.milaboratory.core.sequence.motif.NucleotideMotifSearchParameters
    com.milaboratory.core.sequence.motif.com.milaboratory.core.sequence.motif.NucleotideSQPairProvider
    com.milaboratory.core.sequence.motif.com.milaboratory.core.sequence.motif.NucleotideWildcards
    com.milaboratory.core.sequence.motif.com.milaboratory.core.sequence.motif.SSequencingReadBindings
    com.milaboratory.core.sequence.motif.search
    com.milaboratory.core.sequence.motif.search.com.milaboratory.core.sequence.motif.search.NucleotideMotifSearch
    com.milaboratory.core.sequence.motif.search.com.milaboratory.core.sequence.motif.search.NucleotideMotifSearchOptions
    com.milaboratory.core.sequence.nucleotide
    com.milaboratory.core.sequence.nucleotide.com.milaboratory.core.sequence.nucleotide.NucleotideAlphabet
    com.milaboratory.core.sequence.nucleotide.com.milaboratory.core.sequence.nucleotide.NucleotideAlphabetWithN
    com.milaboratory.core.sequence.nucleotide.com.milaboratory.core.sequence.nucleotide.NucleotideSequence
    com.milaboratory.core.sequence.nucleotide.com.milaboratory.core.sequence.nucleotide.NucleotideSequenceBuilder
    com.milaboratory.core.sequence
    com.milaboratory.core.sequence.com.milaboratory.core.sequence.package-info
    com.milaboratory.core.sequence.quality
    com.milaboratory.core.sequence.quality.com.milaboratory.core.sequence.quality.QualityFormat
    com.milaboratory.core.sequence.quality.com.milaboratory.core.sequence.quality.SequenceQualityPhred
    com.milaboratory.core.sequence.quality.com.milaboratory.core.sequence.quality.SequenceQualityUtils
    com.milaboratory.core.sequence.quality.com.milaboratory.core.sequence.quality.WrongQualityStringException
    com.milaboratory.core.sequence.tree
    com.milaboratory.core.sequence.tree.com.milaboratory.core.sequence.tree.DifferencePenalty
    com.milaboratory.core.sequence.tree.com.milaboratory.core.sequence.tree.LinearMinPenalty
    com.milaboratory.core.sequence.tree.com.milaboratory.core.sequence.tree.MutationGuide
    com.milaboratory.core.sequence.tree.com.milaboratory.core.sequence.tree.NucleotideSQPairSet
    com.milaboratory.core.sequence.tree.com.milaboratory.core.sequence.tree.NucleotideSQPairSetEvent
    com.milaboratory.core.sequence.tree.com.milaboratory.core.sequence.tree.NucleotideSQPairSetEventType
    com.milaboratory.core.sequence.tree.com.milaboratory.core.sequence.tree.NucleotideSQPairSetListener
    com.milaboratory.core.sequence.tree.com.milaboratory.core.sequence.tree.NucleotideSequencePenaltyTreeSet
    com.milaboratory.core.sequence.tree.com.milaboratory.core.sequence.tree.Penalty
    com.milaboratory.core.sequence.tree.com.milaboratory.core.sequence.tree.PenaltyUtils
    com.milaboratory.core.sequence.tree.com.milaboratory.core.sequence.tree.SequenceTreeMap
    com.milaboratory.core.sequence.tree.com.milaboratory.core.sequence.tree.TSSequenceTreeMap
    com.milaboratory.core.sequence.util
    com.milaboratory.core.sequence.util.com.milaboratory.core.sequence.util.NucleotideSequenceAggregator
    com.milaboratory.core.sequence.util.com.milaboratory.core.sequence.util.NucleotideSequenceGenerator
    com.milaboratory.core.sequence.util.com.milaboratory.core.sequence.util.SequenceMismatch
    com.milaboratory.core.sequence.util.com.milaboratory.core.sequence.util.SequenceMismatchCollector
    com.milaboratory.core.sequence.util.com.milaboratory.core.sequence.util.SequencesUtils
    com.milaboratory.core.sequence.util.com.milaboratory.core.sequence.util.Translator
    com.milaboratory.core.sequencing
    com.milaboratory.core.sequencing.com.milaboratory.core.sequencing.SequencingUtils
    com.milaboratory.core.sequencing.com.milaboratory.core.sequencing.WrongStructureException
    com.milaboratory.core.sequencing.io
    com.milaboratory.core.sequencing.io.com.milaboratory.core.sequencing.io.PSequencingDataReader
    com.milaboratory.core.sequencing.io.com.milaboratory.core.sequencing.io.SSequencingDataReader
    com.milaboratory.core.sequencing.io.com.milaboratory.core.sequencing.io.SSequencingDataReaderWithFlowgram
    com.milaboratory.core.sequencing.io.com.milaboratory.core.sequencing.io.SequencingDataReader
    com.milaboratory.core.sequencing.io.fasta
    com.milaboratory.core.sequencing.io.fasta.com.milaboratory.core.sequencing.io.fasta.FastaItem
    com.milaboratory.core.sequencing.io.fasta.com.milaboratory.core.sequencing.io.fasta.FastaItemsReader
    com.milaboratory.core.sequencing.io.fasta.com.milaboratory.core.sequencing.io.fasta.FastaReader
    com.milaboratory.core.sequencing.io.fasta.com.milaboratory.core.sequencing.io.fasta.FastaWriter
    com.milaboratory.core.sequencing.io.fastq
    com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.Casava18InfoProvider
    com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.NucleotideSQPairTrimmer
    com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.PFastqReader
    com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.PFastqWriter
    com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.PSequencingReadsTrimmer
    com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.PairedFiles
    com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.QualityFormatChecker
    com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.ReadInfo
    com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.ReadInfoImpl
    com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.ReadInfoProvider
    com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.SFastqReader
    com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.SFastqWriter
    com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.SSequencingReadTrimmer
    com.milaboratory.core.sequencing.io.sff
    com.milaboratory.core.sequencing.io.sff.com.milaboratory.core.sequencing.io.sff.SFFClipper
    com.milaboratory.core.sequencing.io.sff.com.milaboratory.core.sequencing.io.sff.SFFHeader
    com.milaboratory.core.sequencing.io.sff.com.milaboratory.core.sequencing.io.sff.SFFRAWRead
    com.milaboratory.core.sequencing.io.sff.com.milaboratory.core.sequencing.io.sff.SFFReader
    com.milaboratory.core.sequencing
    com.milaboratory.core.sequencing.com.milaboratory.core.sequencing.package-info
    com.milaboratory.core.sequencing.read
    com.milaboratory.core.sequencing.read.com.milaboratory.core.sequencing.read.PSequencingRead
    com.milaboratory.core.sequencing.read.com.milaboratory.core.sequencing.read.PSequencingReadImpl
    com.milaboratory.core.sequencing.read.com.milaboratory.core.sequencing.read.SSequencingRead
    com.milaboratory.core.sequencing.read.com.milaboratory.core.sequencing.read.SSequencingReadImpl
    com.milaboratory.core.sequencing.read.com.milaboratory.core.sequencing.read.SSequencingReadWithFlowgram
    com.milaboratory.core.sequencing.read.com.milaboratory.core.sequencing.read.SSequencingReadWithFlowgramImpl
    com.milaboratory.core.sequencing.read.com.milaboratory.core.sequencing.read.SequencingRead
    com.milaboratory.util
    com.milaboratory.util.com.milaboratory.util.Bit2Array
    com.milaboratory.util.com.milaboratory.util.BitArray
    com.milaboratory.util.com.milaboratory.util.ByteBufferHolder
    com.milaboratory.util.com.milaboratory.util.ByteBufferHolderCache
    com.milaboratory.util.com.milaboratory.util.CanReportProgress
    com.milaboratory.util.com.milaboratory.util.CanReportProgressAndStage
    com.milaboratory.util.com.milaboratory.util.CompressionType
    com.milaboratory.util.com.milaboratory.util.CoordProxy
    com.milaboratory.util.com.milaboratory.util.CountingInputStream
    com.milaboratory.util.com.milaboratory.util.Factory
    com.milaboratory.util.com.milaboratory.util.HashFunctions
    com.milaboratory.util.com.milaboratory.util.IndexRange
    com.milaboratory.util.com.milaboratory.util.InfiniteLongArray
    com.milaboratory.util.com.milaboratory.util.IntArrayList
    com.milaboratory.util.com.milaboratory.util.LongArrayList
    com.milaboratory.util.com.milaboratory.util.Math
    com.milaboratory.util.com.milaboratory.util.NullOutputStream
    com.milaboratory.util.com.milaboratory.util.ProgressReporter
    com.milaboratory.util.com.milaboratory.util.ProgressReporterFactory
    com.milaboratory.util.com.milaboratory.util.SmartProgressReporter
    com.milaboratory.util.com.milaboratory.util.TablePrintStreamAdapter
    com.milaboratory.util.com.milaboratory.util.XMLException




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