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Download micommons JAR 1.0.3 with all dependencies


Common tools for NGS (next-generation sequencing) data processing.

Files of the artifact micommons version 1.0.3 from the group com.milaboratory.

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Download micommons (1.0.3)
Artifact micommons
Group com.milaboratory
Version 1.0.3
Last update 09. October 2013
Organization not specified
URL http://mitcr.milaboratory.com/
License GNU General Public License, version 3
Dependencies amount 4
Dependencies pipe, jdom, commons-compress, commons-math,
There are maybe transitive dependencies!
The newest version!
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Source code of micommons version 1.0.3

META-INF
META-INF.META-INF.MANIFEST.MF
com.milaboratory.core.sequence
com.milaboratory.core.sequence.com.milaboratory.core.sequence.AbstractSequenceBuilder
com.milaboratory.core.sequence.com.milaboratory.core.sequence.Alphabet
com.milaboratory.core.sequence.com.milaboratory.core.sequence.NucleotideSQPair
com.milaboratory.core.sequence.com.milaboratory.core.sequence.Sequence
com.milaboratory.core.sequence.com.milaboratory.core.sequence.SequenceBuilder
com.milaboratory.core.sequence.com.milaboratory.core.sequence.SequenceBuilderFactory
com.milaboratory.core.sequence.com.milaboratory.core.sequence.SequencingErrorType
com.milaboratory.core.sequence.aminoacid
com.milaboratory.core.sequence.aminoacid.com.milaboratory.core.sequence.aminoacid.AbstractAASequenceBuilder
com.milaboratory.core.sequence.aminoacid.com.milaboratory.core.sequence.aminoacid.AminoAcidAlphabet
com.milaboratory.core.sequence.aminoacid.com.milaboratory.core.sequence.aminoacid.AminoAcidSequence
com.milaboratory.core.sequence.aminoacid.com.milaboratory.core.sequence.aminoacid.AminoAcidSequenceImpl
com.milaboratory.core.sequence.aminoacid.com.milaboratory.core.sequence.aminoacid.CDRAminoAcidAlphabet
com.milaboratory.core.sequence.aminoacid.com.milaboratory.core.sequence.aminoacid.CDRAminoAcidSequence
com.milaboratory.core.sequence.aminoacid.com.milaboratory.core.sequence.aminoacid.CDRTriplet
com.milaboratory.core.sequence.aminoacid.com.milaboratory.core.sequence.aminoacid.Util
com.milaboratory.core.sequence.motif
com.milaboratory.core.sequence.motif.com.milaboratory.core.sequence.motif.LowQualityIndicator
com.milaboratory.core.sequence.motif.com.milaboratory.core.sequence.motif.LowQualityIndicatorProvider
com.milaboratory.core.sequence.motif.com.milaboratory.core.sequence.motif.NucleotideMotif
com.milaboratory.core.sequence.motif.com.milaboratory.core.sequence.motif.NucleotideMotifBuilder
com.milaboratory.core.sequence.motif.com.milaboratory.core.sequence.motif.NucleotideMotifSearchAdvanced
com.milaboratory.core.sequence.motif.com.milaboratory.core.sequence.motif.NucleotideMotifSearchAdvancedWrapper
com.milaboratory.core.sequence.motif.com.milaboratory.core.sequence.motif.NucleotideMotifSearchParameters
com.milaboratory.core.sequence.motif.com.milaboratory.core.sequence.motif.NucleotideSQPairProvider
com.milaboratory.core.sequence.motif.com.milaboratory.core.sequence.motif.NucleotideWildcards
com.milaboratory.core.sequence.motif.com.milaboratory.core.sequence.motif.SSequencingReadBindings
com.milaboratory.core.sequence.motif.search
com.milaboratory.core.sequence.motif.search.com.milaboratory.core.sequence.motif.search.NucleotideMotifSearch
com.milaboratory.core.sequence.motif.search.com.milaboratory.core.sequence.motif.search.NucleotideMotifSearchOptions
com.milaboratory.core.sequence.nucleotide
com.milaboratory.core.sequence.nucleotide.com.milaboratory.core.sequence.nucleotide.NucleotideAlphabet
com.milaboratory.core.sequence.nucleotide.com.milaboratory.core.sequence.nucleotide.NucleotideAlphabetWithN
com.milaboratory.core.sequence.nucleotide.com.milaboratory.core.sequence.nucleotide.NucleotideSequence
com.milaboratory.core.sequence.nucleotide.com.milaboratory.core.sequence.nucleotide.NucleotideSequenceBuilder
com.milaboratory.core.sequence
com.milaboratory.core.sequence.com.milaboratory.core.sequence.package-info
com.milaboratory.core.sequence.quality
com.milaboratory.core.sequence.quality.com.milaboratory.core.sequence.quality.QualityFormat
com.milaboratory.core.sequence.quality.com.milaboratory.core.sequence.quality.SequenceQualityPhred
com.milaboratory.core.sequence.quality.com.milaboratory.core.sequence.quality.SequenceQualityUtils
com.milaboratory.core.sequence.quality.com.milaboratory.core.sequence.quality.WrongQualityStringException
com.milaboratory.core.sequence.tree
com.milaboratory.core.sequence.tree.com.milaboratory.core.sequence.tree.DifferencePenalty
com.milaboratory.core.sequence.tree.com.milaboratory.core.sequence.tree.LinearMinPenalty
com.milaboratory.core.sequence.tree.com.milaboratory.core.sequence.tree.MutationGuide
com.milaboratory.core.sequence.tree.com.milaboratory.core.sequence.tree.NucleotideSQPairSet
com.milaboratory.core.sequence.tree.com.milaboratory.core.sequence.tree.NucleotideSQPairSetEvent
com.milaboratory.core.sequence.tree.com.milaboratory.core.sequence.tree.NucleotideSQPairSetEventType
com.milaboratory.core.sequence.tree.com.milaboratory.core.sequence.tree.NucleotideSQPairSetListener
com.milaboratory.core.sequence.tree.com.milaboratory.core.sequence.tree.NucleotideSequencePenaltyTreeSet
com.milaboratory.core.sequence.tree.com.milaboratory.core.sequence.tree.Penalty
com.milaboratory.core.sequence.tree.com.milaboratory.core.sequence.tree.PenaltyUtils
com.milaboratory.core.sequence.tree.com.milaboratory.core.sequence.tree.SequenceTreeMap
com.milaboratory.core.sequence.tree.com.milaboratory.core.sequence.tree.TSSequenceTreeMap
com.milaboratory.core.sequence.util
com.milaboratory.core.sequence.util.com.milaboratory.core.sequence.util.NucleotideSequenceAggregator
com.milaboratory.core.sequence.util.com.milaboratory.core.sequence.util.NucleotideSequenceGenerator
com.milaboratory.core.sequence.util.com.milaboratory.core.sequence.util.SequenceMismatch
com.milaboratory.core.sequence.util.com.milaboratory.core.sequence.util.SequenceMismatchCollector
com.milaboratory.core.sequence.util.com.milaboratory.core.sequence.util.SequencesUtils
com.milaboratory.core.sequence.util.com.milaboratory.core.sequence.util.Translator
com.milaboratory.core.sequencing
com.milaboratory.core.sequencing.com.milaboratory.core.sequencing.SequencingUtils
com.milaboratory.core.sequencing.com.milaboratory.core.sequencing.WrongStructureException
com.milaboratory.core.sequencing.io
com.milaboratory.core.sequencing.io.com.milaboratory.core.sequencing.io.PSequencingDataReader
com.milaboratory.core.sequencing.io.com.milaboratory.core.sequencing.io.SSequencingDataReader
com.milaboratory.core.sequencing.io.com.milaboratory.core.sequencing.io.SSequencingDataReaderWithFlowgram
com.milaboratory.core.sequencing.io.com.milaboratory.core.sequencing.io.SequencingDataReader
com.milaboratory.core.sequencing.io.fasta
com.milaboratory.core.sequencing.io.fasta.com.milaboratory.core.sequencing.io.fasta.FastaItem
com.milaboratory.core.sequencing.io.fasta.com.milaboratory.core.sequencing.io.fasta.FastaItemsReader
com.milaboratory.core.sequencing.io.fasta.com.milaboratory.core.sequencing.io.fasta.FastaReader
com.milaboratory.core.sequencing.io.fasta.com.milaboratory.core.sequencing.io.fasta.FastaWriter
com.milaboratory.core.sequencing.io.fastq
com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.Casava18InfoProvider
com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.NucleotideSQPairTrimmer
com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.PFastqReader
com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.PFastqWriter
com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.PSequencingReadsTrimmer
com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.PairedFiles
com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.QualityFormatChecker
com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.ReadInfo
com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.ReadInfoImpl
com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.ReadInfoProvider
com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.SFastqReader
com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.SFastqWriter
com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.SSequencingReadTrimmer
com.milaboratory.core.sequencing.io.sff
com.milaboratory.core.sequencing.io.sff.com.milaboratory.core.sequencing.io.sff.SFFClipper
com.milaboratory.core.sequencing.io.sff.com.milaboratory.core.sequencing.io.sff.SFFHeader
com.milaboratory.core.sequencing.io.sff.com.milaboratory.core.sequencing.io.sff.SFFRAWRead
com.milaboratory.core.sequencing.io.sff.com.milaboratory.core.sequencing.io.sff.SFFReader
com.milaboratory.core.sequencing
com.milaboratory.core.sequencing.com.milaboratory.core.sequencing.package-info
com.milaboratory.core.sequencing.read
com.milaboratory.core.sequencing.read.com.milaboratory.core.sequencing.read.PSequencingRead
com.milaboratory.core.sequencing.read.com.milaboratory.core.sequencing.read.PSequencingReadImpl
com.milaboratory.core.sequencing.read.com.milaboratory.core.sequencing.read.SSequencingRead
com.milaboratory.core.sequencing.read.com.milaboratory.core.sequencing.read.SSequencingReadImpl
com.milaboratory.core.sequencing.read.com.milaboratory.core.sequencing.read.SSequencingReadWithFlowgram
com.milaboratory.core.sequencing.read.com.milaboratory.core.sequencing.read.SSequencingReadWithFlowgramImpl
com.milaboratory.core.sequencing.read.com.milaboratory.core.sequencing.read.SequencingRead
com.milaboratory.util
com.milaboratory.util.com.milaboratory.util.Bit2Array
com.milaboratory.util.com.milaboratory.util.BitArray
com.milaboratory.util.com.milaboratory.util.ByteBufferHolder
com.milaboratory.util.com.milaboratory.util.ByteBufferHolderCache
com.milaboratory.util.com.milaboratory.util.CanReportProgress
com.milaboratory.util.com.milaboratory.util.CanReportProgressAndStage
com.milaboratory.util.com.milaboratory.util.CompressionType
com.milaboratory.util.com.milaboratory.util.CoordProxy
com.milaboratory.util.com.milaboratory.util.CountingInputStream
com.milaboratory.util.com.milaboratory.util.Factory
com.milaboratory.util.com.milaboratory.util.HashFunctions
com.milaboratory.util.com.milaboratory.util.IndexRange
com.milaboratory.util.com.milaboratory.util.InfiniteLongArray
com.milaboratory.util.com.milaboratory.util.IntArrayList
com.milaboratory.util.com.milaboratory.util.LongArrayList
com.milaboratory.util.com.milaboratory.util.Math
com.milaboratory.util.com.milaboratory.util.NullOutputStream
com.milaboratory.util.com.milaboratory.util.ProgressReporter
com.milaboratory.util.com.milaboratory.util.ProgressReporterFactory
com.milaboratory.util.com.milaboratory.util.SmartProgressReporter
com.milaboratory.util.com.milaboratory.util.TablePrintStreamAdapter
com.milaboratory.util.com.milaboratory.util.XMLException




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