Download mitcr JAR 1.0.3 with all dependencies

Files of the artifact mitcr version 1.0.3 from the group com.milaboratory.

Artifact mitcr
Group com.milaboratory
Version 1.0.3

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1 downloads

Source code of mitcr version 1.0.3

META-INF

META-INF.META-INF.LICENSE-APACHE-2.0

META-INF.META-INF.LICENSE-LGPL-3.0

META-INF.META-INF.MANIFEST.MF

com.milaboratory.core.clone

com.milaboratory.core.clone.com.milaboratory.core.clone.Clone

com.milaboratory.core.clone.com.milaboratory.core.clone.CloneCluster

com.milaboratory.core.clone.com.milaboratory.core.clone.CloneClusterImpl

com.milaboratory.core.clone.com.milaboratory.core.clone.CloneComparator

com.milaboratory.core.clone.com.milaboratory.core.clone.CloneImpl

com.milaboratory.core.clone.com.milaboratory.core.clone.CloneSet

com.milaboratory.core.clone.com.milaboratory.core.clone.CloneSetClustered

com.milaboratory.core.clone.com.milaboratory.core.clone.CloneSetClusteredImpl

com.milaboratory.core.clone.com.milaboratory.core.clone.CloneSetClusteredImpl.orig

com.milaboratory.core.clone.com.milaboratory.core.clone.CloneSetImpl

com.milaboratory.core.clone.com.milaboratory.core.clone.package-info

com.milaboratory.core.io

com.milaboratory.core.io.com.milaboratory.core.io.CloneSetIO

com.milaboratory.core.segment

com.milaboratory.core.segment.com.milaboratory.core.segment.Allele

com.milaboratory.core.segment.com.milaboratory.core.segment.AlleleSet

com.milaboratory.core.segment.com.milaboratory.core.segment.CDR

com.milaboratory.core.segment.com.milaboratory.core.segment.Chain

com.milaboratory.core.segment.com.milaboratory.core.segment.DefaultSegmentLibrary

com.milaboratory.core.segment.com.milaboratory.core.segment.Gene

com.milaboratory.core.segment.com.milaboratory.core.segment.MD5ChecksumTestFail

com.milaboratory.core.segment.com.milaboratory.core.segment.Molecule

com.milaboratory.core.segment.com.milaboratory.core.segment.Segment

com.milaboratory.core.segment.com.milaboratory.core.segment.SegmentFamily

com.milaboratory.core.segment.com.milaboratory.core.segment.SegmentGroup

com.milaboratory.core.segment.com.milaboratory.core.segment.SegmentGroupContainer

com.milaboratory.core.segment.com.milaboratory.core.segment.SegmentGroupType

com.milaboratory.core.segment.com.milaboratory.core.segment.SegmentLibrary

com.milaboratory.core.segment.com.milaboratory.core.segment.SegmentSet

com.milaboratory.core.segment.com.milaboratory.core.segment.SegmentUtils

com.milaboratory.core.segment.com.milaboratory.core.segment.Species

com.milaboratory.core.segment.com.milaboratory.core.segment.SpeciesSegmentGroup

com.milaboratory.core.segment.com.milaboratory.core.segment.package-info

com.milaboratory.core.util

com.milaboratory.core.util.com.milaboratory.core.util.CloneSetsComparator

com.milaboratory.core.util.com.milaboratory.core.util.CloneSetsComparisonResult

com.milaboratory.core.util.com.milaboratory.core.util.CompareCloneSets

com.milaboratory.mitcr

com.milaboratory.mitcr.com.milaboratory.mitcr.SimpleTest

com.milaboratory.mitcr.com.milaboratory.mitcr.SimpleTest.orig

com.milaboratory.mitcr.cdrextraction

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CDR3ExtractionResult

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CDR3ExtractionResultUtils

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CDR3Extractor

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CDR3ExtractorFactory

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CDR3ExtractorFactoryFromSQPair

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CDR3ExtractorFactoryFromSRead

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CDR3ExtractorFromPRead

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CDR3ExtractorFromSQPair

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CDR3ExtractorFromSRead

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CDR3ExtractorListener

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CDR3ExtractorParameters

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CoreCDR3Extractor

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.Strand

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.TargetRead

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.package-info

com.milaboratory.mitcr.cli

com.milaboratory.mitcr.cli.com.milaboratory.mitcr.cli.BuildInformation

com.milaboratory.mitcr.cli.com.milaboratory.mitcr.cli.BuildInformationProvider

com.milaboratory.mitcr.cli.com.milaboratory.mitcr.cli.ExportDetalizationLevel

com.milaboratory.mitcr.cli.com.milaboratory.mitcr.cli.Main

com.milaboratory.mitcr.cli.com.milaboratory.mitcr.cli.ParametersIO

com.milaboratory.mitcr.cli.com.milaboratory.mitcr.cli.ReportExporter

com.milaboratory.mitcr.clonegenerator

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.AccumulatorClone

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.AccumulatorCloneAvrg

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.AccumulatorCloneAvrgCompressed

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.AccumulatorCloneAvrgStrict

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.AccumulatorCloneFactory

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.AccumulatorCloneMax

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.AccumulatorCloneMaxCompressed

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.AccumulatorCloneMaxStrict

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.AccumulatorType

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.AverageQualityCalculator

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.BarcodeAggregator

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.BasicCloneGenerator

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.BasicCloneGeneratorParameters

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.CloneGenerator

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.CloneGeneratorFactory

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.CloneGeneratorListener

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.CloneGeneratorParameters

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.CloneGeneratorParametersDeserializer

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.CountVectorUtils

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.InMemoryResultAccumulator

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.LQFilteringOffCloneGenerator

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.LQFilteringOffCloneGeneratorParameters

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.LQMappingCloneGenerator

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.LQMappingCloneGeneratorParameters

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.OnHDDResultAccumulator

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.ResultsAccumulator

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.SequencingReadLink

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.TreePackingInfo

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.package-info

com.milaboratory.mitcr.clsexport

com.milaboratory.mitcr.clsexport.com.milaboratory.mitcr.clsexport.AbstractCloneSetMetadata

com.milaboratory.mitcr.clsexport.com.milaboratory.mitcr.clsexport.AbstractCloneSetMetadataIO

com.milaboratory.mitcr.clsexport.com.milaboratory.mitcr.clsexport.CloneClusterData

com.milaboratory.mitcr.clsexport.com.milaboratory.mitcr.clsexport.CloneClusterDataIO

com.milaboratory.mitcr.clsexport.com.milaboratory.mitcr.clsexport.CloneIO

com.milaboratory.mitcr.clsexport.com.milaboratory.mitcr.clsexport.ClsExporter

com.milaboratory.mitcr.clsexport.com.milaboratory.mitcr.clsexport.DataSetMetadata

com.milaboratory.mitcr.clsexport.com.milaboratory.mitcr.clsexport.DataSetMetadataIO

com.milaboratory.mitcr.clsexport.com.milaboratory.mitcr.clsexport.SCloneSetMetadata

com.milaboratory.mitcr.clsexport.com.milaboratory.mitcr.clsexport.SCloneSetMetadataIO

com.milaboratory.mitcr.clsexport.io

com.milaboratory.mitcr.clsexport.io.com.milaboratory.mitcr.clsexport.io.AbstractBinaryContainerIO

com.milaboratory.mitcr.clsexport.io.com.milaboratory.mitcr.clsexport.io.BinaryContainerIO

com.milaboratory.mitcr.clsexport.io.com.milaboratory.mitcr.clsexport.io.BinaryContainerReader

com.milaboratory.mitcr.clsexport.io.com.milaboratory.mitcr.clsexport.io.BinaryContainerWriter

com.milaboratory.mitcr.clsexport.io.com.milaboratory.mitcr.clsexport.io.DataInputPositioned

com.milaboratory.mitcr.clsexport.io.com.milaboratory.mitcr.clsexport.io.DataOutputPositioned

com.milaboratory.mitcr.clsexport.io.com.milaboratory.mitcr.clsexport.io.FixedBlockSize

com.milaboratory.mitcr.clsexport.io.com.milaboratory.mitcr.clsexport.io.IOUtill

com.milaboratory.mitcr.clsexport.io.com.milaboratory.mitcr.clsexport.io.IndexedContainerInput

com.milaboratory.mitcr.clsexport.io.com.milaboratory.mitcr.clsexport.io.IndexedContainerOutput

com.milaboratory.mitcr.clsexport.io.com.milaboratory.mitcr.clsexport.io.SignatureCheckError

com.milaboratory.mitcr.clsexport.io.com.milaboratory.mitcr.clsexport.io.WrongStructureException

com.milaboratory.mitcr.clsexport.io.impl

com.milaboratory.mitcr.clsexport.io.impl.com.milaboratory.mitcr.clsexport.io.impl.AbstractIndexedContainerInput

com.milaboratory.mitcr.clsexport.io.impl.com.milaboratory.mitcr.clsexport.io.impl.BBBackedLongArrayList

com.milaboratory.mitcr.clsexport.io.impl.com.milaboratory.mitcr.clsexport.io.impl.ByteArrayIndexedContainerInput

com.milaboratory.mitcr.clsexport.io.impl.com.milaboratory.mitcr.clsexport.io.impl.DataInputPositionedStream

com.milaboratory.mitcr.clsexport.io.impl.com.milaboratory.mitcr.clsexport.io.impl.DataOutputPositionedStream

com.milaboratory.mitcr.clsexport.io.impl.com.milaboratory.mitcr.clsexport.io.impl.FileIndexedContainerInput

com.milaboratory.mitcr.clsexport.io.impl.com.milaboratory.mitcr.clsexport.io.impl.FileIndexedContainerOutput

com.milaboratory.mitcr.clsexport.io.impl.com.milaboratory.mitcr.clsexport.io.impl.IByteArrayOutputStream

com.milaboratory.mitcr.clsexport.io

com.milaboratory.mitcr.clsexport.io.com.milaboratory.mitcr.clsexport.io.package-info

com.milaboratory.mitcr.clsexport.io.serializers

com.milaboratory.mitcr.clsexport.io.serializers.com.milaboratory.mitcr.clsexport.io.serializers.Bit2ArrayIO

com.milaboratory.mitcr.clsexport.io.serializers.com.milaboratory.mitcr.clsexport.io.serializers.BitArrayIO

com.milaboratory.mitcr.clsexport.io.serializers.com.milaboratory.mitcr.clsexport.io.serializers.NucleotideSQPairIO

com.milaboratory.mitcr.clsexport.io.serializers.com.milaboratory.mitcr.clsexport.io.serializers.NucleotideSequenceIO

com.milaboratory.mitcr.clsexport.io.serializers.com.milaboratory.mitcr.clsexport.io.serializers.SegmentGroupContainerIO

com.milaboratory.mitcr.clsexport.io.serializers.com.milaboratory.mitcr.clsexport.io.serializers.SequenceQualityIO

com.milaboratory.mitcr.clsexport.io.util

com.milaboratory.mitcr.clsexport.io.util.com.milaboratory.mitcr.clsexport.io.util.ClassUtils

com.milaboratory.mitcr.clsexport.io.util.com.milaboratory.mitcr.clsexport.io.util.PrimitiveArrayIO

com.milaboratory.mitcr.clsexport.io.util.com.milaboratory.mitcr.clsexport.io.util.PrimitiveIO

com.milaboratory.mitcr.clsexport.io.util.com.milaboratory.mitcr.clsexport.io.util.PrimitiveMapIO

com.milaboratory.mitcr.clusterization

com.milaboratory.mitcr.clusterization.com.milaboratory.mitcr.clusterization.CloneClusterizationType

com.milaboratory.mitcr.clusterization.com.milaboratory.mitcr.clusterization.CloneClusterizer

com.milaboratory.mitcr.clusterization.com.milaboratory.mitcr.clusterization.CloneClusterizerFactory

com.milaboratory.mitcr.clusterization.com.milaboratory.mitcr.clusterization.ClusterizationListener

com.milaboratory.mitcr.clusterization.com.milaboratory.mitcr.clusterization.DummyCloneClusterizer

com.milaboratory.mitcr.clusterization.com.milaboratory.mitcr.clusterization.MonolayerCluster

com.milaboratory.mitcr.clusterization.com.milaboratory.mitcr.clusterization.PenaltyBasedFastClusterizer

com.milaboratory.mitcr.clusterization.com.milaboratory.mitcr.clusterization.PenaltyCalculator

com.milaboratory.mitcr.clusterization.com.milaboratory.mitcr.clusterization.package-info

com.milaboratory.mitcr.clusterization.penalty

com.milaboratory.mitcr.clusterization.penalty.com.milaboratory.mitcr.clusterization.penalty.NoClusterizationPenalty

com.milaboratory.mitcr.clusterization.penalty.com.milaboratory.mitcr.clusterization.penalty.OneMismatchPenaltyCalculator

com.milaboratory.mitcr.clusterization.penalty.com.milaboratory.mitcr.clusterization.penalty.VDJExplicitPenalty

com.milaboratory.mitcr.clusterization.penalty.com.milaboratory.mitcr.clusterization.penalty.VJMismatchPenalty

com.milaboratory.mitcr.pipeline

com.milaboratory.mitcr.pipeline.com.milaboratory.mitcr.pipeline.AnalysisListener

com.milaboratory.mitcr.pipeline.com.milaboratory.mitcr.pipeline.AnalysisListenerCombiner

com.milaboratory.mitcr.pipeline.com.milaboratory.mitcr.pipeline.DefaultAnalysisListener

com.milaboratory.mitcr.pipeline.com.milaboratory.mitcr.pipeline.FullPipeline

com.milaboratory.mitcr.pipeline.com.milaboratory.mitcr.pipeline.ParameterPresets

com.milaboratory.mitcr.pipeline.com.milaboratory.mitcr.pipeline.Parameters

com.milaboratory.mitcr.pipeline.com.milaboratory.mitcr.pipeline.package-info

com.milaboratory.mitcr.qualitystrategy

com.milaboratory.mitcr.qualitystrategy.com.milaboratory.mitcr.qualitystrategy.DummyQualityInterpretationStrategy

com.milaboratory.mitcr.qualitystrategy.com.milaboratory.mitcr.qualitystrategy.GBNSBothSidesNucleotideInfoProvider

com.milaboratory.mitcr.qualitystrategy.com.milaboratory.mitcr.qualitystrategy.GBNSNucleotideInfoProvider

com.milaboratory.mitcr.qualitystrategy.com.milaboratory.mitcr.qualitystrategy.GBNSUtils

com.milaboratory.mitcr.qualitystrategy.com.milaboratory.mitcr.qualitystrategy.GoodBadNucleotideSequence

com.milaboratory.mitcr.qualitystrategy.com.milaboratory.mitcr.qualitystrategy.GoodBadNucleotideSequenceProvider

com.milaboratory.mitcr.qualitystrategy.com.milaboratory.mitcr.qualitystrategy.IlluminaQualityInterpretationStrategy

com.milaboratory.mitcr.qualitystrategy.com.milaboratory.mitcr.qualitystrategy.QualityInterpretationStrategy

com.milaboratory.mitcr.qualitystrategy.com.milaboratory.mitcr.qualitystrategy.QualityInterpretationStrategyDeserializer

com.milaboratory.mitcr.qualitystrategy.com.milaboratory.mitcr.qualitystrategy.package-info

com.milaboratory.mitcr.statistics

com.milaboratory.mitcr.statistics.com.milaboratory.mitcr.statistics.AnalysisStatisticsAggregator

com.milaboratory.mitcr.statistics.com.milaboratory.mitcr.statistics.CloneSetQualityControl

com.milaboratory.mitcr.util.evolver

com.milaboratory.mitcr.util.evolver.com.milaboratory.mitcr.util.evolver.AbstractGenerator

com.milaboratory.mitcr.util.evolver.com.milaboratory.mitcr.util.evolver.ConditionsProvider

com.milaboratory.mitcr.util.evolver.com.milaboratory.mitcr.util.evolver.Generator

com.milaboratory.mitcr.util.evolver.com.milaboratory.mitcr.util.evolver.Reactor

com.milaboratory.mitcr.vdjmapping

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.AlignmentDirection

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.DSegmentMapper

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.DSegmentMapperFactory

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.DSegmentMapperParameters

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.PointSegmentMapper

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.SearchDirection

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.SegmentMapper

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.SegmentMappingResult

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.SimplestAlignment

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.VDJSegmentsMapper

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.VDJSegmentsMapperFactory

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.VDJSegmentsMappingResult

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.VJMapperListener

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.VJSegmentMapper

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.VJSegmentMapperFactory

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.VJSegmentMapperParameters

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.VJSegmentMappingResult

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.VJSegmentMappingResultFormatter

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.VJSegmentsMapperAdapter

com.milaboratory.mitcr.vdjmapping.ntree

com.milaboratory.mitcr.vdjmapping.ntree.com.milaboratory.mitcr.vdjmapping.ntree.NTreeNode

com.milaboratory.mitcr.vdjmapping.ntree.com.milaboratory.mitcr.vdjmapping.ntree.NTreeNodeGenerator

com.milaboratory.mitcr.vdjmapping.ntree.com.milaboratory.mitcr.vdjmapping.ntree.NTreeNodeGeneratorBadDeletion

com.milaboratory.mitcr.vdjmapping.ntree.com.milaboratory.mitcr.vdjmapping.ntree.NTreeNodeGeneratorBadMismatch

com.milaboratory.mitcr.vdjmapping.ntree.com.milaboratory.mitcr.vdjmapping.ntree.NTreeNodeGeneratorBadMismatch3B

com.milaboratory.mitcr.vdjmapping.ntree.com.milaboratory.mitcr.vdjmapping.ntree.NTreeNodeGeneratorMatchOnly

com.milaboratory.mitcr.vdjmapping.ntree.com.milaboratory.mitcr.vdjmapping.ntree.NTreeSlider

com.milaboratory.mitcr.vdjmapping.ntree.com.milaboratory.mitcr.vdjmapping.ntree.NucleotideInfo

com.milaboratory.mitcr.vdjmapping.ntree.com.milaboratory.mitcr.vdjmapping.ntree.NucleotideInfoProvider

com.milaboratory.mitcr.vdjmapping

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.package-info

com.milaboratory.mitcr.vdjmapping.tree

com.milaboratory.mitcr.vdjmapping.tree.com.milaboratory.mitcr.vdjmapping.tree.CoreVJSegmentMapper

com.milaboratory.mitcr.vdjmapping.tree.com.milaboratory.mitcr.vdjmapping.tree.OneDirectionSegmentMapper

com.milaboratory.mitcr.vdjmapping.tree.com.milaboratory.mitcr.vdjmapping.tree.STree

com.milaboratory.mitcr.vdjmapping.tree.com.milaboratory.mitcr.vdjmapping.tree.STreeResultHolder

com.milaboratory.mitcr.vdjmapping.tree.com.milaboratory.mitcr.vdjmapping.tree.SmartAlignmentSegmentMapper

com.milaboratory.mitcr.vdjmapping.tree.com.milaboratory.mitcr.vdjmapping.tree.SmartAlignmentSegmentMapperV2

com.milaboratory.mitcr.vdjmapping.tree.com.milaboratory.mitcr.vdjmapping.tree.UniDirectionSegmentMapper

com.milaboratory.mitcr.vdjmapping.trivial

com.milaboratory.mitcr.vdjmapping.trivial.com.milaboratory.mitcr.vdjmapping.trivial.OneSideAligner

com.milaboratory.mitcr.vdjmapping.trivial.com.milaboratory.mitcr.vdjmapping.trivial.OneSideAlignmentResult

com.milaboratory.mitcr.vdjmapping.trivial.com.milaboratory.mitcr.vdjmapping.trivial.TrivialSegmentMapper

com.milaboratory.mitcr.vdjmapping.trivial.com.milaboratory.mitcr.vdjmapping.trivial.TrivialSegmentMapperFactory

com.milaboratory.util

com.milaboratory.util.com.milaboratory.util.NullOutputStream

com.milaboratory.util.com.milaboratory.util.TablePrintStreamAdapter

com.milaboratory.util.com.milaboratory.util.XMLException

.mitcr

.parameters.xsd

.segments.gsl