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Download mitcr JAR 1.0.3 with all dependencies

MiTCR is an open source software package aimed at extraction of information on repertoire of T-cell clones from Next Generation Sequencing (NGS) data. It is designed with the knowledge of the critical challenges arising in everyday processing of immunological data.

Files of the artifact mitcr version 1.0.3 from the group com.milaboratory.

Artifact mitcr
Group com.milaboratory
Version 1.0.3
Last update 09. October 2013
Tags: clones information challenges with knowledge repertoire cell immunological next package data everyday from sequencing extraction open critical software designed source mitcr processing arising generation aimed
Organization not specified
URL http://mitcr.milaboratory.com/
License GNU General Public License, version 3
Dependencies amount 3
Dependencies micommons, commons-cli, trove4j,
There are maybe transitive dependencies!

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Source code of mitcr version 1.0.3

META-INF

META-INF.META-INF.LICENSE-APACHE-2.0

META-INF.META-INF.LICENSE-LGPL-3.0

META-INF.META-INF.MANIFEST.MF

com.milaboratory.core.clone

com.milaboratory.core.clone.com.milaboratory.core.clone.Clone

com.milaboratory.core.clone.com.milaboratory.core.clone.CloneCluster

com.milaboratory.core.clone.com.milaboratory.core.clone.CloneClusterImpl

com.milaboratory.core.clone.com.milaboratory.core.clone.CloneComparator

com.milaboratory.core.clone.com.milaboratory.core.clone.CloneImpl

com.milaboratory.core.clone.com.milaboratory.core.clone.CloneSet

com.milaboratory.core.clone.com.milaboratory.core.clone.CloneSetClustered

com.milaboratory.core.clone.com.milaboratory.core.clone.CloneSetClusteredImpl

com.milaboratory.core.clone.com.milaboratory.core.clone.CloneSetClusteredImpl.orig

com.milaboratory.core.clone.com.milaboratory.core.clone.CloneSetImpl

com.milaboratory.core.clone.com.milaboratory.core.clone.package-info

com.milaboratory.core.io

com.milaboratory.core.io.com.milaboratory.core.io.CloneSetIO

com.milaboratory.core.segment

com.milaboratory.core.segment.com.milaboratory.core.segment.Allele

com.milaboratory.core.segment.com.milaboratory.core.segment.AlleleSet

com.milaboratory.core.segment.com.milaboratory.core.segment.CDR

com.milaboratory.core.segment.com.milaboratory.core.segment.Chain

com.milaboratory.core.segment.com.milaboratory.core.segment.DefaultSegmentLibrary

com.milaboratory.core.segment.com.milaboratory.core.segment.Gene

com.milaboratory.core.segment.com.milaboratory.core.segment.MD5ChecksumTestFail

com.milaboratory.core.segment.com.milaboratory.core.segment.Molecule

com.milaboratory.core.segment.com.milaboratory.core.segment.Segment

com.milaboratory.core.segment.com.milaboratory.core.segment.SegmentFamily

com.milaboratory.core.segment.com.milaboratory.core.segment.SegmentGroup

com.milaboratory.core.segment.com.milaboratory.core.segment.SegmentGroupContainer

com.milaboratory.core.segment.com.milaboratory.core.segment.SegmentGroupType

com.milaboratory.core.segment.com.milaboratory.core.segment.SegmentLibrary

com.milaboratory.core.segment.com.milaboratory.core.segment.SegmentSet

com.milaboratory.core.segment.com.milaboratory.core.segment.SegmentUtils

com.milaboratory.core.segment.com.milaboratory.core.segment.Species

com.milaboratory.core.segment.com.milaboratory.core.segment.SpeciesSegmentGroup

com.milaboratory.core.segment.com.milaboratory.core.segment.package-info

com.milaboratory.core.util

com.milaboratory.core.util.com.milaboratory.core.util.CloneSetsComparator

com.milaboratory.core.util.com.milaboratory.core.util.CloneSetsComparisonResult

com.milaboratory.core.util.com.milaboratory.core.util.CompareCloneSets

com.milaboratory.mitcr

com.milaboratory.mitcr.com.milaboratory.mitcr.SimpleTest

com.milaboratory.mitcr.com.milaboratory.mitcr.SimpleTest.orig

com.milaboratory.mitcr.cdrextraction

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CDR3ExtractionResult

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CDR3ExtractionResultUtils

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CDR3Extractor

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CDR3ExtractorFactory

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CDR3ExtractorFactoryFromSQPair

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CDR3ExtractorFactoryFromSRead

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CDR3ExtractorFromPRead

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CDR3ExtractorFromSQPair

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CDR3ExtractorFromSRead

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CDR3ExtractorListener

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CDR3ExtractorParameters

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CoreCDR3Extractor

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.Strand

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.TargetRead

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.package-info

com.milaboratory.mitcr.cli

com.milaboratory.mitcr.cli.com.milaboratory.mitcr.cli.BuildInformation

com.milaboratory.mitcr.cli.com.milaboratory.mitcr.cli.BuildInformationProvider

com.milaboratory.mitcr.cli.com.milaboratory.mitcr.cli.ExportDetalizationLevel

com.milaboratory.mitcr.cli.com.milaboratory.mitcr.cli.Main

com.milaboratory.mitcr.cli.com.milaboratory.mitcr.cli.ParametersIO

com.milaboratory.mitcr.cli.com.milaboratory.mitcr.cli.ReportExporter

com.milaboratory.mitcr.clonegenerator

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.AccumulatorClone

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.AccumulatorCloneAvrg

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.AccumulatorCloneAvrgCompressed

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.AccumulatorCloneAvrgStrict

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.AccumulatorCloneFactory

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.AccumulatorCloneMax

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.AccumulatorCloneMaxCompressed

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.AccumulatorCloneMaxStrict

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.AccumulatorType

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.AverageQualityCalculator

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.BarcodeAggregator

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.BasicCloneGenerator

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.BasicCloneGeneratorParameters

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.CloneGenerator

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.CloneGeneratorFactory

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.CloneGeneratorListener

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.CloneGeneratorParameters

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.CloneGeneratorParametersDeserializer

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.CountVectorUtils

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.InMemoryResultAccumulator

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.LQFilteringOffCloneGenerator

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.LQFilteringOffCloneGeneratorParameters

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.LQMappingCloneGenerator

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.LQMappingCloneGeneratorParameters

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.OnHDDResultAccumulator

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.ResultsAccumulator

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.SequencingReadLink

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.TreePackingInfo

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.package-info

com.milaboratory.mitcr.clsexport

com.milaboratory.mitcr.clsexport.com.milaboratory.mitcr.clsexport.AbstractCloneSetMetadata

com.milaboratory.mitcr.clsexport.com.milaboratory.mitcr.clsexport.AbstractCloneSetMetadataIO

com.milaboratory.mitcr.clsexport.com.milaboratory.mitcr.clsexport.CloneClusterData

com.milaboratory.mitcr.clsexport.com.milaboratory.mitcr.clsexport.CloneClusterDataIO

com.milaboratory.mitcr.clsexport.com.milaboratory.mitcr.clsexport.CloneIO

com.milaboratory.mitcr.clsexport.com.milaboratory.mitcr.clsexport.ClsExporter

com.milaboratory.mitcr.clsexport.com.milaboratory.mitcr.clsexport.DataSetMetadata

com.milaboratory.mitcr.clsexport.com.milaboratory.mitcr.clsexport.DataSetMetadataIO

com.milaboratory.mitcr.clsexport.com.milaboratory.mitcr.clsexport.SCloneSetMetadata

com.milaboratory.mitcr.clsexport.com.milaboratory.mitcr.clsexport.SCloneSetMetadataIO

com.milaboratory.mitcr.clsexport.io

com.milaboratory.mitcr.clsexport.io.com.milaboratory.mitcr.clsexport.io.AbstractBinaryContainerIO

com.milaboratory.mitcr.clsexport.io.com.milaboratory.mitcr.clsexport.io.BinaryContainerIO

com.milaboratory.mitcr.clsexport.io.com.milaboratory.mitcr.clsexport.io.BinaryContainerReader

com.milaboratory.mitcr.clsexport.io.com.milaboratory.mitcr.clsexport.io.BinaryContainerWriter

com.milaboratory.mitcr.clsexport.io.com.milaboratory.mitcr.clsexport.io.DataInputPositioned

com.milaboratory.mitcr.clsexport.io.com.milaboratory.mitcr.clsexport.io.DataOutputPositioned

com.milaboratory.mitcr.clsexport.io.com.milaboratory.mitcr.clsexport.io.FixedBlockSize

com.milaboratory.mitcr.clsexport.io.com.milaboratory.mitcr.clsexport.io.IOUtill

com.milaboratory.mitcr.clsexport.io.com.milaboratory.mitcr.clsexport.io.IndexedContainerInput

com.milaboratory.mitcr.clsexport.io.com.milaboratory.mitcr.clsexport.io.IndexedContainerOutput

com.milaboratory.mitcr.clsexport.io.com.milaboratory.mitcr.clsexport.io.SignatureCheckError

com.milaboratory.mitcr.clsexport.io.com.milaboratory.mitcr.clsexport.io.WrongStructureException

com.milaboratory.mitcr.clsexport.io.impl

com.milaboratory.mitcr.clsexport.io.impl.com.milaboratory.mitcr.clsexport.io.impl.AbstractIndexedContainerInput

com.milaboratory.mitcr.clsexport.io.impl.com.milaboratory.mitcr.clsexport.io.impl.BBBackedLongArrayList

com.milaboratory.mitcr.clsexport.io.impl.com.milaboratory.mitcr.clsexport.io.impl.ByteArrayIndexedContainerInput

com.milaboratory.mitcr.clsexport.io.impl.com.milaboratory.mitcr.clsexport.io.impl.DataInputPositionedStream

com.milaboratory.mitcr.clsexport.io.impl.com.milaboratory.mitcr.clsexport.io.impl.DataOutputPositionedStream

com.milaboratory.mitcr.clsexport.io.impl.com.milaboratory.mitcr.clsexport.io.impl.FileIndexedContainerInput

com.milaboratory.mitcr.clsexport.io.impl.com.milaboratory.mitcr.clsexport.io.impl.FileIndexedContainerOutput

com.milaboratory.mitcr.clsexport.io.impl.com.milaboratory.mitcr.clsexport.io.impl.IByteArrayOutputStream

com.milaboratory.mitcr.clsexport.io

com.milaboratory.mitcr.clsexport.io.com.milaboratory.mitcr.clsexport.io.package-info

com.milaboratory.mitcr.clsexport.io.serializers

com.milaboratory.mitcr.clsexport.io.serializers.com.milaboratory.mitcr.clsexport.io.serializers.Bit2ArrayIO

com.milaboratory.mitcr.clsexport.io.serializers.com.milaboratory.mitcr.clsexport.io.serializers.BitArrayIO

com.milaboratory.mitcr.clsexport.io.serializers.com.milaboratory.mitcr.clsexport.io.serializers.NucleotideSQPairIO

com.milaboratory.mitcr.clsexport.io.serializers.com.milaboratory.mitcr.clsexport.io.serializers.NucleotideSequenceIO

com.milaboratory.mitcr.clsexport.io.serializers.com.milaboratory.mitcr.clsexport.io.serializers.SegmentGroupContainerIO

com.milaboratory.mitcr.clsexport.io.serializers.com.milaboratory.mitcr.clsexport.io.serializers.SequenceQualityIO

com.milaboratory.mitcr.clsexport.io.util

com.milaboratory.mitcr.clsexport.io.util.com.milaboratory.mitcr.clsexport.io.util.ClassUtils

com.milaboratory.mitcr.clsexport.io.util.com.milaboratory.mitcr.clsexport.io.util.PrimitiveArrayIO

com.milaboratory.mitcr.clsexport.io.util.com.milaboratory.mitcr.clsexport.io.util.PrimitiveIO

com.milaboratory.mitcr.clsexport.io.util.com.milaboratory.mitcr.clsexport.io.util.PrimitiveMapIO

com.milaboratory.mitcr.clusterization

com.milaboratory.mitcr.clusterization.com.milaboratory.mitcr.clusterization.CloneClusterizationType

com.milaboratory.mitcr.clusterization.com.milaboratory.mitcr.clusterization.CloneClusterizer

com.milaboratory.mitcr.clusterization.com.milaboratory.mitcr.clusterization.CloneClusterizerFactory

com.milaboratory.mitcr.clusterization.com.milaboratory.mitcr.clusterization.ClusterizationListener

com.milaboratory.mitcr.clusterization.com.milaboratory.mitcr.clusterization.DummyCloneClusterizer

com.milaboratory.mitcr.clusterization.com.milaboratory.mitcr.clusterization.MonolayerCluster

com.milaboratory.mitcr.clusterization.com.milaboratory.mitcr.clusterization.PenaltyBasedFastClusterizer

com.milaboratory.mitcr.clusterization.com.milaboratory.mitcr.clusterization.PenaltyCalculator

com.milaboratory.mitcr.clusterization.com.milaboratory.mitcr.clusterization.package-info

com.milaboratory.mitcr.clusterization.penalty

com.milaboratory.mitcr.clusterization.penalty.com.milaboratory.mitcr.clusterization.penalty.NoClusterizationPenalty

com.milaboratory.mitcr.clusterization.penalty.com.milaboratory.mitcr.clusterization.penalty.OneMismatchPenaltyCalculator

com.milaboratory.mitcr.clusterization.penalty.com.milaboratory.mitcr.clusterization.penalty.VDJExplicitPenalty

com.milaboratory.mitcr.clusterization.penalty.com.milaboratory.mitcr.clusterization.penalty.VJMismatchPenalty

com.milaboratory.mitcr.pipeline

com.milaboratory.mitcr.pipeline.com.milaboratory.mitcr.pipeline.AnalysisListener

com.milaboratory.mitcr.pipeline.com.milaboratory.mitcr.pipeline.AnalysisListenerCombiner

com.milaboratory.mitcr.pipeline.com.milaboratory.mitcr.pipeline.DefaultAnalysisListener

com.milaboratory.mitcr.pipeline.com.milaboratory.mitcr.pipeline.FullPipeline

com.milaboratory.mitcr.pipeline.com.milaboratory.mitcr.pipeline.ParameterPresets

com.milaboratory.mitcr.pipeline.com.milaboratory.mitcr.pipeline.Parameters

com.milaboratory.mitcr.pipeline.com.milaboratory.mitcr.pipeline.package-info

com.milaboratory.mitcr.qualitystrategy

com.milaboratory.mitcr.qualitystrategy.com.milaboratory.mitcr.qualitystrategy.DummyQualityInterpretationStrategy

com.milaboratory.mitcr.qualitystrategy.com.milaboratory.mitcr.qualitystrategy.GBNSBothSidesNucleotideInfoProvider

com.milaboratory.mitcr.qualitystrategy.com.milaboratory.mitcr.qualitystrategy.GBNSNucleotideInfoProvider

com.milaboratory.mitcr.qualitystrategy.com.milaboratory.mitcr.qualitystrategy.GBNSUtils

com.milaboratory.mitcr.qualitystrategy.com.milaboratory.mitcr.qualitystrategy.GoodBadNucleotideSequence

com.milaboratory.mitcr.qualitystrategy.com.milaboratory.mitcr.qualitystrategy.GoodBadNucleotideSequenceProvider

com.milaboratory.mitcr.qualitystrategy.com.milaboratory.mitcr.qualitystrategy.IlluminaQualityInterpretationStrategy

com.milaboratory.mitcr.qualitystrategy.com.milaboratory.mitcr.qualitystrategy.QualityInterpretationStrategy

com.milaboratory.mitcr.qualitystrategy.com.milaboratory.mitcr.qualitystrategy.QualityInterpretationStrategyDeserializer

com.milaboratory.mitcr.qualitystrategy.com.milaboratory.mitcr.qualitystrategy.package-info

com.milaboratory.mitcr.statistics

com.milaboratory.mitcr.statistics.com.milaboratory.mitcr.statistics.AnalysisStatisticsAggregator

com.milaboratory.mitcr.statistics.com.milaboratory.mitcr.statistics.CloneSetQualityControl

com.milaboratory.mitcr.util.evolver

com.milaboratory.mitcr.util.evolver.com.milaboratory.mitcr.util.evolver.AbstractGenerator

com.milaboratory.mitcr.util.evolver.com.milaboratory.mitcr.util.evolver.ConditionsProvider

com.milaboratory.mitcr.util.evolver.com.milaboratory.mitcr.util.evolver.Generator

com.milaboratory.mitcr.util.evolver.com.milaboratory.mitcr.util.evolver.Reactor

com.milaboratory.mitcr.vdjmapping

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.AlignmentDirection

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.DSegmentMapper

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.DSegmentMapperFactory

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.DSegmentMapperParameters

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.PointSegmentMapper

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.SearchDirection

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.SegmentMapper

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.SegmentMappingResult

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.SimplestAlignment

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.VDJSegmentsMapper

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.VDJSegmentsMapperFactory

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.VDJSegmentsMappingResult

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.VJMapperListener

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.VJSegmentMapper

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.VJSegmentMapperFactory

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.VJSegmentMapperParameters

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.VJSegmentMappingResult

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.VJSegmentMappingResultFormatter

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.VJSegmentsMapperAdapter

com.milaboratory.mitcr.vdjmapping.ntree

com.milaboratory.mitcr.vdjmapping.ntree.com.milaboratory.mitcr.vdjmapping.ntree.NTreeNode

com.milaboratory.mitcr.vdjmapping.ntree.com.milaboratory.mitcr.vdjmapping.ntree.NTreeNodeGenerator

com.milaboratory.mitcr.vdjmapping.ntree.com.milaboratory.mitcr.vdjmapping.ntree.NTreeNodeGeneratorBadDeletion

com.milaboratory.mitcr.vdjmapping.ntree.com.milaboratory.mitcr.vdjmapping.ntree.NTreeNodeGeneratorBadMismatch

com.milaboratory.mitcr.vdjmapping.ntree.com.milaboratory.mitcr.vdjmapping.ntree.NTreeNodeGeneratorBadMismatch3B

com.milaboratory.mitcr.vdjmapping.ntree.com.milaboratory.mitcr.vdjmapping.ntree.NTreeNodeGeneratorMatchOnly

com.milaboratory.mitcr.vdjmapping.ntree.com.milaboratory.mitcr.vdjmapping.ntree.NTreeSlider

com.milaboratory.mitcr.vdjmapping.ntree.com.milaboratory.mitcr.vdjmapping.ntree.NucleotideInfo

com.milaboratory.mitcr.vdjmapping.ntree.com.milaboratory.mitcr.vdjmapping.ntree.NucleotideInfoProvider

com.milaboratory.mitcr.vdjmapping

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.package-info

com.milaboratory.mitcr.vdjmapping.tree

com.milaboratory.mitcr.vdjmapping.tree.com.milaboratory.mitcr.vdjmapping.tree.CoreVJSegmentMapper

com.milaboratory.mitcr.vdjmapping.tree.com.milaboratory.mitcr.vdjmapping.tree.OneDirectionSegmentMapper

com.milaboratory.mitcr.vdjmapping.tree.com.milaboratory.mitcr.vdjmapping.tree.STree

com.milaboratory.mitcr.vdjmapping.tree.com.milaboratory.mitcr.vdjmapping.tree.STreeResultHolder

com.milaboratory.mitcr.vdjmapping.tree.com.milaboratory.mitcr.vdjmapping.tree.SmartAlignmentSegmentMapper

com.milaboratory.mitcr.vdjmapping.tree.com.milaboratory.mitcr.vdjmapping.tree.SmartAlignmentSegmentMapperV2

com.milaboratory.mitcr.vdjmapping.tree.com.milaboratory.mitcr.vdjmapping.tree.UniDirectionSegmentMapper

com.milaboratory.mitcr.vdjmapping.trivial

com.milaboratory.mitcr.vdjmapping.trivial.com.milaboratory.mitcr.vdjmapping.trivial.OneSideAligner

com.milaboratory.mitcr.vdjmapping.trivial.com.milaboratory.mitcr.vdjmapping.trivial.OneSideAlignmentResult

com.milaboratory.mitcr.vdjmapping.trivial.com.milaboratory.mitcr.vdjmapping.trivial.TrivialSegmentMapper

com.milaboratory.mitcr.vdjmapping.trivial.com.milaboratory.mitcr.vdjmapping.trivial.TrivialSegmentMapperFactory

com.milaboratory.util

com.milaboratory.util.com.milaboratory.util.NullOutputStream

com.milaboratory.util.com.milaboratory.util.TablePrintStreamAdapter

com.milaboratory.util.com.milaboratory.util.XMLException

.parameters.xsd

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