Download mitcr JAR 1.0 with all dependencies

Files of the artifact mitcr version 1.0 from the group com.milaboratory.

Artifact mitcr
Group com.milaboratory
Version 1.0

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1 downloads

Source code of mitcr version 1.0

META-INF

META-INF.META-INF.LICENSE-APACHE-2.0

META-INF.META-INF.LICENSE-LGPL-3.0

META-INF.META-INF.MANIFEST.MF

com.milaboratory.core.clone

com.milaboratory.core.clone.com.milaboratory.core.clone.Clone

com.milaboratory.core.clone.com.milaboratory.core.clone.CloneCluster

com.milaboratory.core.clone.com.milaboratory.core.clone.CloneClusterImpl

com.milaboratory.core.clone.com.milaboratory.core.clone.CloneComparator

com.milaboratory.core.clone.com.milaboratory.core.clone.CloneImpl

com.milaboratory.core.clone.com.milaboratory.core.clone.CloneSet

com.milaboratory.core.clone.com.milaboratory.core.clone.CloneSetClustered

com.milaboratory.core.clone.com.milaboratory.core.clone.CloneSetClusteredImpl

com.milaboratory.core.clone.com.milaboratory.core.clone.CloneSetClusteredImpl.orig

com.milaboratory.core.clone.com.milaboratory.core.clone.CloneSetImpl

com.milaboratory.core.clone.com.milaboratory.core.clone.package-info

com.milaboratory.core.io

com.milaboratory.core.io.com.milaboratory.core.io.AbstractBinaryContainerIO

com.milaboratory.core.io.com.milaboratory.core.io.BinaryContainerIO

com.milaboratory.core.io.com.milaboratory.core.io.BinaryContainerReader

com.milaboratory.core.io.com.milaboratory.core.io.BinaryContainerWriter

com.milaboratory.core.io.com.milaboratory.core.io.DataInputPositioned

com.milaboratory.core.io.com.milaboratory.core.io.DataOutputPositioned

com.milaboratory.core.io.com.milaboratory.core.io.FixedBlockSize

com.milaboratory.core.io.com.milaboratory.core.io.IOUtill

com.milaboratory.core.io.com.milaboratory.core.io.IndexedContainerInput

com.milaboratory.core.io.com.milaboratory.core.io.IndexedContainerOutput

com.milaboratory.core.io.com.milaboratory.core.io.SignatureCheckError

com.milaboratory.core.io.com.milaboratory.core.io.WrongStructureException

com.milaboratory.core.io.impl

com.milaboratory.core.io.impl.com.milaboratory.core.io.impl.AbstractIndexedContainerInput

com.milaboratory.core.io.impl.com.milaboratory.core.io.impl.BBBackedLongArrayList

com.milaboratory.core.io.impl.com.milaboratory.core.io.impl.ByteArrayIndexedContainerInput

com.milaboratory.core.io.impl.com.milaboratory.core.io.impl.ByteBufferHolder

com.milaboratory.core.io.impl.com.milaboratory.core.io.impl.ByteBufferHolderCache

com.milaboratory.core.io.impl.com.milaboratory.core.io.impl.DataInputPositionedStream

com.milaboratory.core.io.impl.com.milaboratory.core.io.impl.DataOutputPositionedStream

com.milaboratory.core.io.impl.com.milaboratory.core.io.impl.FileIndexedContainerInput

com.milaboratory.core.io.impl.com.milaboratory.core.io.impl.FileIndexedContainerOutput

com.milaboratory.core.io.impl.com.milaboratory.core.io.impl.IByteArrayOutputStream

com.milaboratory.core.io

com.milaboratory.core.io.com.milaboratory.core.io.package-info

com.milaboratory.core.io.serializers

com.milaboratory.core.io.serializers.com.milaboratory.core.io.serializers.Bit2ArrayIO

com.milaboratory.core.io.serializers.com.milaboratory.core.io.serializers.BitArrayIO

com.milaboratory.core.io.serializers.com.milaboratory.core.io.serializers.NucleotideSQPairIO

com.milaboratory.core.io.serializers.com.milaboratory.core.io.serializers.NucleotideSequenceIO

com.milaboratory.core.io.serializers.com.milaboratory.core.io.serializers.SegmentGroupContainerIO

com.milaboratory.core.io.serializers.com.milaboratory.core.io.serializers.SequenceQualityIO

com.milaboratory.core.io.util

com.milaboratory.core.io.util.com.milaboratory.core.io.util.ClassUtils

com.milaboratory.core.io.util.com.milaboratory.core.io.util.PrimitiveArrayIO

com.milaboratory.core.io.util.com.milaboratory.core.io.util.PrimitiveIO

com.milaboratory.core.io.util.com.milaboratory.core.io.util.PrimitiveMapIO

com.milaboratory.core.segment

com.milaboratory.core.segment.com.milaboratory.core.segment.Allele

com.milaboratory.core.segment.com.milaboratory.core.segment.AlleleSet

com.milaboratory.core.segment.com.milaboratory.core.segment.CDR

com.milaboratory.core.segment.com.milaboratory.core.segment.Chain

com.milaboratory.core.segment.com.milaboratory.core.segment.DefaultSegmentLibrary

com.milaboratory.core.segment.com.milaboratory.core.segment.Gene

com.milaboratory.core.segment.com.milaboratory.core.segment.MD5ChecksumTestFail

com.milaboratory.core.segment.com.milaboratory.core.segment.Molecule

com.milaboratory.core.segment.com.milaboratory.core.segment.Segment

com.milaboratory.core.segment.com.milaboratory.core.segment.SegmentFamily

com.milaboratory.core.segment.com.milaboratory.core.segment.SegmentGroup

com.milaboratory.core.segment.com.milaboratory.core.segment.SegmentGroupContainer

com.milaboratory.core.segment.com.milaboratory.core.segment.SegmentGroupType

com.milaboratory.core.segment.com.milaboratory.core.segment.SegmentLibrary

com.milaboratory.core.segment.com.milaboratory.core.segment.SegmentSet

com.milaboratory.core.segment.com.milaboratory.core.segment.SegmentUtils

com.milaboratory.core.segment.com.milaboratory.core.segment.Species

com.milaboratory.core.segment.com.milaboratory.core.segment.SpeciesSegmentGroup

com.milaboratory.core.segment.com.milaboratory.core.segment.package-info

com.milaboratory.core.sequence

com.milaboratory.core.sequence.com.milaboratory.core.sequence.Alphabet

com.milaboratory.core.sequence.com.milaboratory.core.sequence.NucleotideSQPair

com.milaboratory.core.sequence.com.milaboratory.core.sequence.Sequence

com.milaboratory.core.sequence.com.milaboratory.core.sequence.SequenceBuilder

com.milaboratory.core.sequence.com.milaboratory.core.sequence.SequenceBuilderFactory

com.milaboratory.core.sequence.com.milaboratory.core.sequence.SequenceQuality

com.milaboratory.core.sequence.com.milaboratory.core.sequence.SequencingErrorType

com.milaboratory.core.sequence.aminoacid

com.milaboratory.core.sequence.aminoacid.com.milaboratory.core.sequence.aminoacid.AminoAcidAlphabet

com.milaboratory.core.sequence.aminoacid.com.milaboratory.core.sequence.aminoacid.AminoAcidSequence

com.milaboratory.core.sequence.aminoacid.com.milaboratory.core.sequence.aminoacid.AminoAcidSequenceImpl

com.milaboratory.core.sequence.aminoacid.com.milaboratory.core.sequence.aminoacid.CDRAminoAcidAlphabet

com.milaboratory.core.sequence.aminoacid.com.milaboratory.core.sequence.aminoacid.CDRAminoAcidSequence

com.milaboratory.core.sequence.aminoacid.com.milaboratory.core.sequence.aminoacid.CDRTriplet

com.milaboratory.core.sequence.motif

com.milaboratory.core.sequence.motif.com.milaboratory.core.sequence.motif.LowQualityIndicator

com.milaboratory.core.sequence.motif.com.milaboratory.core.sequence.motif.LowQualityIndicatorProvider

com.milaboratory.core.sequence.motif.com.milaboratory.core.sequence.motif.NucleotideMotif

com.milaboratory.core.sequence.motif.com.milaboratory.core.sequence.motif.NucleotideMotifBuilder

com.milaboratory.core.sequence.motif.com.milaboratory.core.sequence.motif.NucleotideMotifSearchAdvanced

com.milaboratory.core.sequence.motif.com.milaboratory.core.sequence.motif.NucleotideMotifSearchAdvancedWrapper

com.milaboratory.core.sequence.motif.com.milaboratory.core.sequence.motif.NucleotideMotifSearchParameters

com.milaboratory.core.sequence.motif.com.milaboratory.core.sequence.motif.NucleotideSQPairProvider

com.milaboratory.core.sequence.motif.com.milaboratory.core.sequence.motif.NucleotideWildcards

com.milaboratory.core.sequence.motif.com.milaboratory.core.sequence.motif.SSequencingReadBindings

com.milaboratory.core.sequence.nucleotide

com.milaboratory.core.sequence.nucleotide.com.milaboratory.core.sequence.nucleotide.AbstarctNucleotideSequence

com.milaboratory.core.sequence.nucleotide.com.milaboratory.core.sequence.nucleotide.NucleotideAlphabet

com.milaboratory.core.sequence.nucleotide.com.milaboratory.core.sequence.nucleotide.NucleotideAlphabetWithN

com.milaboratory.core.sequence.nucleotide.com.milaboratory.core.sequence.nucleotide.NucleotideSequence

com.milaboratory.core.sequence.nucleotide.com.milaboratory.core.sequence.nucleotide.NucleotideSequenceBuilder

com.milaboratory.core.sequence.nucleotide.com.milaboratory.core.sequence.nucleotide.NucleotideSequenceImpl

com.milaboratory.core.sequence

com.milaboratory.core.sequence.com.milaboratory.core.sequence.package-info

com.milaboratory.core.sequence.quality

com.milaboratory.core.sequence.quality.com.milaboratory.core.sequence.quality.SequenceQualityPhred

com.milaboratory.core.sequence.tree

com.milaboratory.core.sequence.tree.com.milaboratory.core.sequence.tree.LinearMinPenalty

com.milaboratory.core.sequence.tree.com.milaboratory.core.sequence.tree.NucleotideSQPairSet

com.milaboratory.core.sequence.tree.com.milaboratory.core.sequence.tree.NucleotideSQPairSetEvent

com.milaboratory.core.sequence.tree.com.milaboratory.core.sequence.tree.NucleotideSQPairSetEventType

com.milaboratory.core.sequence.tree.com.milaboratory.core.sequence.tree.NucleotideSQPairSetListener

com.milaboratory.core.sequence.tree.com.milaboratory.core.sequence.tree.NucleotideSequencePenaltyTreeSet

com.milaboratory.core.sequence.tree.com.milaboratory.core.sequence.tree.Penalty

com.milaboratory.core.sequence.tree.com.milaboratory.core.sequence.tree.SequenceTreeMap

com.milaboratory.core.sequence.util

com.milaboratory.core.sequence.util.com.milaboratory.core.sequence.util.NucleotideRCSequence

com.milaboratory.core.sequence.util.com.milaboratory.core.sequence.util.NucleotideSequenceGenerator

com.milaboratory.core.sequence.util.com.milaboratory.core.sequence.util.NucleotideSubSequence

com.milaboratory.core.sequence.util.com.milaboratory.core.sequence.util.SequenceMismatch

com.milaboratory.core.sequence.util.com.milaboratory.core.sequence.util.SequenceMismatchCollector

com.milaboratory.core.sequence.util.com.milaboratory.core.sequence.util.SequenceQualityUtils

com.milaboratory.core.sequence.util.com.milaboratory.core.sequence.util.SequencesUtils

com.milaboratory.core.sequence.util.com.milaboratory.core.sequence.util.SubSequenceQuality

com.milaboratory.core.sequence.util.com.milaboratory.core.sequence.util.Translator

com.milaboratory.core.sequencing

com.milaboratory.core.sequencing.com.milaboratory.core.sequencing.SequencingUtils

com.milaboratory.core.sequencing.io

com.milaboratory.core.sequencing.io.com.milaboratory.core.sequencing.io.PSequencingDataReader

com.milaboratory.core.sequencing.io.com.milaboratory.core.sequencing.io.SSequencingDataReader

com.milaboratory.core.sequencing.io.com.milaboratory.core.sequencing.io.SSequencingDataReaderWithFlowgram

com.milaboratory.core.sequencing.io.com.milaboratory.core.sequencing.io.SequencingDataReader

com.milaboratory.core.sequencing.io.fasta

com.milaboratory.core.sequencing.io.fasta.com.milaboratory.core.sequencing.io.fasta.FastaItem

com.milaboratory.core.sequencing.io.fasta.com.milaboratory.core.sequencing.io.fasta.FastaItemsReader

com.milaboratory.core.sequencing.io.fasta.com.milaboratory.core.sequencing.io.fasta.FastaReader

com.milaboratory.core.sequencing.io.fasta.com.milaboratory.core.sequencing.io.fasta.FastaWriter

com.milaboratory.core.sequencing.io.fastq

com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.Casava18InfoProvider

com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.IlluminaInfoProvider

com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.IlluminaInfoProviderFactory

com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.IlluminaReadInfo

com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.IlluminaReadInfoImpl

com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.NucleotideSQPairTrimmer

com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.PFastqReader

com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.PFastqWriter

com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.PSequencingReadsTrimmer

com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.SFastqReader

com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.SFastqWriter

com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.SSequencingReadTrimmer

com.milaboratory.core.sequencing.io.fastq.quality

com.milaboratory.core.sequencing.io.fastq.quality.com.milaboratory.core.sequencing.io.fastq.quality.AbstractSequenceQualityFactory

com.milaboratory.core.sequencing.io.fastq.quality.com.milaboratory.core.sequencing.io.fastq.quality.PhredSequenceQualityFactory

com.milaboratory.core.sequencing.io.fastq.quality.com.milaboratory.core.sequencing.io.fastq.quality.QualityStringFormat

com.milaboratory.core.sequencing.io.fastq.quality.com.milaboratory.core.sequencing.io.fastq.quality.SequenceQualityFactory

com.milaboratory.core.sequencing.io.fastq.quality.com.milaboratory.core.sequencing.io.fastq.quality.WrongQualityStringException

com.milaboratory.core.sequencing.io.sff

com.milaboratory.core.sequencing.io.sff.com.milaboratory.core.sequencing.io.sff.SFFClipper

com.milaboratory.core.sequencing.io.sff.com.milaboratory.core.sequencing.io.sff.SFFHeader

com.milaboratory.core.sequencing.io.sff.com.milaboratory.core.sequencing.io.sff.SFFRAWRead

com.milaboratory.core.sequencing.io.sff.com.milaboratory.core.sequencing.io.sff.SFFReader

com.milaboratory.core.sequencing

com.milaboratory.core.sequencing.com.milaboratory.core.sequencing.package-info

com.milaboratory.core.sequencing.read

com.milaboratory.core.sequencing.read.com.milaboratory.core.sequencing.read.PDataSerRecord

com.milaboratory.core.sequencing.read.com.milaboratory.core.sequencing.read.PSequencingRead

com.milaboratory.core.sequencing.read.com.milaboratory.core.sequencing.read.PSequencingReadImpl

com.milaboratory.core.sequencing.read.com.milaboratory.core.sequencing.read.SSequencingRead

com.milaboratory.core.sequencing.read.com.milaboratory.core.sequencing.read.SSequencingReadImpl

com.milaboratory.core.sequencing.read.com.milaboratory.core.sequencing.read.SSequencingReadWithFlowgram

com.milaboratory.core.sequencing.read.com.milaboratory.core.sequencing.read.SSequencingReadWithFlowgramImpl

com.milaboratory.core.sequencing.read.com.milaboratory.core.sequencing.read.SequencingRead

com.milaboratory.mitcr

com.milaboratory.mitcr.com.milaboratory.mitcr.SimpleTest

com.milaboratory.mitcr.com.milaboratory.mitcr.SimpleTest.orig

com.milaboratory.mitcr.cdrextraction

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CDR3ExtractionResult

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CDR3ExtractionResultUtils

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CDR3Extractor

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CDR3ExtractorFactory

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CDR3ExtractorFactoryFromSQPair

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CDR3ExtractorFactoryFromSRead

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CDR3ExtractorFromPRead

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CDR3ExtractorFromSQPair

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CDR3ExtractorFromSRead

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CDR3ExtractorListener

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CDR3ExtractorParameters

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CoreCDR3Extractor

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.Strand

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.TargetRead

com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.package-info

com.milaboratory.mitcr.cli

com.milaboratory.mitcr.cli.com.milaboratory.mitcr.cli.BuildInformation

com.milaboratory.mitcr.cli.com.milaboratory.mitcr.cli.BuildInformationProvider

com.milaboratory.mitcr.cli.com.milaboratory.mitcr.cli.ExportDetalizationLevel

com.milaboratory.mitcr.cli.com.milaboratory.mitcr.cli.Main

com.milaboratory.mitcr.cli.com.milaboratory.mitcr.cli.ParametersIO

com.milaboratory.mitcr.cli.com.milaboratory.mitcr.cli.ReportExporter

com.milaboratory.mitcr.cli.com.milaboratory.mitcr.cli.TabDelimitedExporter

com.milaboratory.mitcr.cli.com.milaboratory.mitcr.cli.TabDelimitedImporter

com.milaboratory.mitcr.clonegenerator

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.AccumulatorClone

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.BarcodeAggregator

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.BasicCloneGenerator

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.BasicCloneGeneratorParameters

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.CloneGenerator

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.CloneGeneratorFactory

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.CloneGeneratorListener

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.CloneGeneratorParameters

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.CloneGeneratorParametersDeserializer

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.InMemoryResultAccumulator

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.LQFilteringOffCloneGenerator

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.LQFilteringOffCloneGeneratorParameters

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.LQMappingCloneGenerator

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.LQMappingCloneGeneratorParameters

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.OnHDDResultAccumulator

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.ResultsAccumulator

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.SequencingReadLink

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.TreePackingInfo

com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.package-info

com.milaboratory.mitcr.clsexport

com.milaboratory.mitcr.clsexport.com.milaboratory.mitcr.clsexport.AbstractCloneSetMetadata

com.milaboratory.mitcr.clsexport.com.milaboratory.mitcr.clsexport.AbstractCloneSetMetadataIO

com.milaboratory.mitcr.clsexport.com.milaboratory.mitcr.clsexport.CloneClusterData

com.milaboratory.mitcr.clsexport.com.milaboratory.mitcr.clsexport.CloneClusterDataIO

com.milaboratory.mitcr.clsexport.com.milaboratory.mitcr.clsexport.CloneIO

com.milaboratory.mitcr.clsexport.com.milaboratory.mitcr.clsexport.ClsExporter

com.milaboratory.mitcr.clsexport.com.milaboratory.mitcr.clsexport.DataSetMetadata

com.milaboratory.mitcr.clsexport.com.milaboratory.mitcr.clsexport.DataSetMetadataIO

com.milaboratory.mitcr.clsexport.com.milaboratory.mitcr.clsexport.SCloneSetMetadata

com.milaboratory.mitcr.clsexport.com.milaboratory.mitcr.clsexport.SCloneSetMetadataIO

com.milaboratory.mitcr.clusterization

com.milaboratory.mitcr.clusterization.com.milaboratory.mitcr.clusterization.CloneClusterizationType

com.milaboratory.mitcr.clusterization.com.milaboratory.mitcr.clusterization.CloneClusterizer

com.milaboratory.mitcr.clusterization.com.milaboratory.mitcr.clusterization.CloneClusterizerFactory

com.milaboratory.mitcr.clusterization.com.milaboratory.mitcr.clusterization.ClusterizationListener

com.milaboratory.mitcr.clusterization.com.milaboratory.mitcr.clusterization.DummyCloneClusterizer

com.milaboratory.mitcr.clusterization.com.milaboratory.mitcr.clusterization.MonolayerCluster

com.milaboratory.mitcr.clusterization.com.milaboratory.mitcr.clusterization.PenaltyBasedFastClusterizer

com.milaboratory.mitcr.clusterization.com.milaboratory.mitcr.clusterization.PenaltyCalculator

com.milaboratory.mitcr.clusterization.com.milaboratory.mitcr.clusterization.package-info

com.milaboratory.mitcr.clusterization.penalty

com.milaboratory.mitcr.clusterization.penalty.com.milaboratory.mitcr.clusterization.penalty.NoClusterizationPenalty

com.milaboratory.mitcr.clusterization.penalty.com.milaboratory.mitcr.clusterization.penalty.OneMismatchPenaltyCalculator

com.milaboratory.mitcr.clusterization.penalty.com.milaboratory.mitcr.clusterization.penalty.VDJExplicitPenalty

com.milaboratory.mitcr.clusterization.penalty.com.milaboratory.mitcr.clusterization.penalty.VJMismatchPenalty

com.milaboratory.mitcr.pipeline

com.milaboratory.mitcr.pipeline.com.milaboratory.mitcr.pipeline.AnalysisListener

com.milaboratory.mitcr.pipeline.com.milaboratory.mitcr.pipeline.AnalysisListenerCombiner

com.milaboratory.mitcr.pipeline.com.milaboratory.mitcr.pipeline.DefaultAnalysisListener

com.milaboratory.mitcr.pipeline.com.milaboratory.mitcr.pipeline.FullPipeline

com.milaboratory.mitcr.pipeline.com.milaboratory.mitcr.pipeline.ParameterPresets

com.milaboratory.mitcr.pipeline.com.milaboratory.mitcr.pipeline.Parameters

com.milaboratory.mitcr.pipeline.com.milaboratory.mitcr.pipeline.package-info

com.milaboratory.mitcr.qualitystrategy

com.milaboratory.mitcr.qualitystrategy.com.milaboratory.mitcr.qualitystrategy.DummyQualityInterpretationStrategy

com.milaboratory.mitcr.qualitystrategy.com.milaboratory.mitcr.qualitystrategy.GBNSBothSidesNucleotideInfoProvider

com.milaboratory.mitcr.qualitystrategy.com.milaboratory.mitcr.qualitystrategy.GBNSNucleotideInfoProvider

com.milaboratory.mitcr.qualitystrategy.com.milaboratory.mitcr.qualitystrategy.GBNSUtils

com.milaboratory.mitcr.qualitystrategy.com.milaboratory.mitcr.qualitystrategy.GoodBadNucleotideSequence

com.milaboratory.mitcr.qualitystrategy.com.milaboratory.mitcr.qualitystrategy.GoodBadNucleotideSequenceProvider

com.milaboratory.mitcr.qualitystrategy.com.milaboratory.mitcr.qualitystrategy.IlluminaQualityInterpretationStrategy

com.milaboratory.mitcr.qualitystrategy.com.milaboratory.mitcr.qualitystrategy.QualityInterpretationStrategy

com.milaboratory.mitcr.qualitystrategy.com.milaboratory.mitcr.qualitystrategy.QualityInterpretationStrategyDeserializer

com.milaboratory.mitcr.qualitystrategy.com.milaboratory.mitcr.qualitystrategy.package-info

com.milaboratory.mitcr.statistics

com.milaboratory.mitcr.statistics.com.milaboratory.mitcr.statistics.AnalysisStatisticsAggregator

com.milaboratory.mitcr.statistics.com.milaboratory.mitcr.statistics.CloneSetQualityControl

com.milaboratory.mitcr.util.evolver

com.milaboratory.mitcr.util.evolver.com.milaboratory.mitcr.util.evolver.AbstractGenerator

com.milaboratory.mitcr.util.evolver.com.milaboratory.mitcr.util.evolver.ConditionsProvider

com.milaboratory.mitcr.util.evolver.com.milaboratory.mitcr.util.evolver.Generator

com.milaboratory.mitcr.util.evolver.com.milaboratory.mitcr.util.evolver.Reactor

com.milaboratory.mitcr.vdjmapping

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.AlignmentDirection

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.DSegmentMapper

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.DSegmentMapperFactory

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.DSegmentMapperParameters

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.PointSegmentMapper

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.SearchDirection

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.SegmentMapper

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.SegmentMappingResult

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.SimplestAlignment

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.VDJSegmentsMapper

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.VDJSegmentsMapperFactory

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.VDJSegmentsMappingResult

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.VJMapperListener

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.VJSegmentMapper

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.VJSegmentMapperFactory

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.VJSegmentMapperParameters

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.VJSegmentMappingResult

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.VJSegmentMappingResultFormatter

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.VJSegmentsMapperAdapter

com.milaboratory.mitcr.vdjmapping.ntree

com.milaboratory.mitcr.vdjmapping.ntree.com.milaboratory.mitcr.vdjmapping.ntree.NTreeNode

com.milaboratory.mitcr.vdjmapping.ntree.com.milaboratory.mitcr.vdjmapping.ntree.NTreeNodeGenerator

com.milaboratory.mitcr.vdjmapping.ntree.com.milaboratory.mitcr.vdjmapping.ntree.NTreeNodeGeneratorBadDeletion

com.milaboratory.mitcr.vdjmapping.ntree.com.milaboratory.mitcr.vdjmapping.ntree.NTreeNodeGeneratorBadMismatch

com.milaboratory.mitcr.vdjmapping.ntree.com.milaboratory.mitcr.vdjmapping.ntree.NTreeNodeGeneratorBadMismatch3B

com.milaboratory.mitcr.vdjmapping.ntree.com.milaboratory.mitcr.vdjmapping.ntree.NTreeNodeGeneratorMatchOnly

com.milaboratory.mitcr.vdjmapping.ntree.com.milaboratory.mitcr.vdjmapping.ntree.NTreeSlider

com.milaboratory.mitcr.vdjmapping.ntree.com.milaboratory.mitcr.vdjmapping.ntree.NucleotideInfo

com.milaboratory.mitcr.vdjmapping.ntree.com.milaboratory.mitcr.vdjmapping.ntree.NucleotideInfoProvider

com.milaboratory.mitcr.vdjmapping

com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.package-info

com.milaboratory.mitcr.vdjmapping.tree

com.milaboratory.mitcr.vdjmapping.tree.com.milaboratory.mitcr.vdjmapping.tree.CoreVJSegmentMapper

com.milaboratory.mitcr.vdjmapping.tree.com.milaboratory.mitcr.vdjmapping.tree.OneDirectionSegmentMapper

com.milaboratory.mitcr.vdjmapping.tree.com.milaboratory.mitcr.vdjmapping.tree.STree

com.milaboratory.mitcr.vdjmapping.tree.com.milaboratory.mitcr.vdjmapping.tree.STreeResultHolder

com.milaboratory.mitcr.vdjmapping.tree.com.milaboratory.mitcr.vdjmapping.tree.SmartAlignmentSegmentMapper

com.milaboratory.mitcr.vdjmapping.tree.com.milaboratory.mitcr.vdjmapping.tree.SmartAlignmentSegmentMapperV2

com.milaboratory.mitcr.vdjmapping.tree.com.milaboratory.mitcr.vdjmapping.tree.UniDirectionSegmentMapper

com.milaboratory.mitcr.vdjmapping.trivial

com.milaboratory.mitcr.vdjmapping.trivial.com.milaboratory.mitcr.vdjmapping.trivial.OneSideAligner

com.milaboratory.mitcr.vdjmapping.trivial.com.milaboratory.mitcr.vdjmapping.trivial.OneSideAlignmentResult

com.milaboratory.mitcr.vdjmapping.trivial.com.milaboratory.mitcr.vdjmapping.trivial.TrivialSegmentMapper

com.milaboratory.mitcr.vdjmapping.trivial.com.milaboratory.mitcr.vdjmapping.trivial.TrivialSegmentMapperFactory

com.milaboratory.util

com.milaboratory.util.com.milaboratory.util.Bit2Array

com.milaboratory.util.com.milaboratory.util.BitArray

com.milaboratory.util.com.milaboratory.util.CanReportProgress

com.milaboratory.util.com.milaboratory.util.CanReportProgressAndStage

com.milaboratory.util.com.milaboratory.util.CompressionType

com.milaboratory.util.com.milaboratory.util.CoordProxy

com.milaboratory.util.com.milaboratory.util.Factory

com.milaboratory.util.com.milaboratory.util.HashFunctions

com.milaboratory.util.com.milaboratory.util.IndexRange

com.milaboratory.util.com.milaboratory.util.IntArrayList

com.milaboratory.util.com.milaboratory.util.LongArrayList

com.milaboratory.util.com.milaboratory.util.Math

com.milaboratory.util.com.milaboratory.util.NullOutputStream

com.milaboratory.util.com.milaboratory.util.ProgressReporter

com.milaboratory.util.com.milaboratory.util.ProgressReporterFactory

com.milaboratory.util.com.milaboratory.util.TablePrintStreamAdapter

com.milaboratory.util.com.milaboratory.util.XMLException

.mitcr

.segments.gsl