All Downloads are FREE. Search and download functionalities are using the official Maven repository.
Search JAR files by class name

Download mitcr JAR 1.0 with all dependencies


MiTCR is an open source software package aimed at extraction of information on repertoire of T-cell clones from Next Generation Sequencing (NGS) data. It is designed with the knowledge of the critical challenges arising in everyday processing of immunological data.

Files of the artifact mitcr version 1.0 from the group com.milaboratory.

Artifact mitcr
Group com.milaboratory
Version 1.0
Last update 26. March 2013
Tags: clones information challenges with knowledge repertoire cell immunological next package data everyday from sequencing extraction open critical software designed source mitcr processing arising generation aimed
Organization not specified
URL http://mitcr.milaboratory.com/
License GNU General Public License, version 3
Dependencies amount 3
Dependencies micommons, commons-cli, trove4j,
There are maybe transitive dependencies!
There is a newer version: 1.0.3
Show newest version
Show more of this group  Show more artifacts with this name
Show all versions of mitcr Show documentation

Please rate this JAR file. Is it a good library?

1 downloads

Source code of mitcr version 1.0

META-INF
META-INF.META-INF.LICENSE-APACHE-2.0
META-INF.META-INF.LICENSE-LGPL-3.0
META-INF.META-INF.MANIFEST.MF
com.milaboratory.core.clone
com.milaboratory.core.clone.com.milaboratory.core.clone.Clone
com.milaboratory.core.clone.com.milaboratory.core.clone.CloneCluster
com.milaboratory.core.clone.com.milaboratory.core.clone.CloneClusterImpl
com.milaboratory.core.clone.com.milaboratory.core.clone.CloneComparator
com.milaboratory.core.clone.com.milaboratory.core.clone.CloneImpl
com.milaboratory.core.clone.com.milaboratory.core.clone.CloneSet
com.milaboratory.core.clone.com.milaboratory.core.clone.CloneSetClustered
com.milaboratory.core.clone.com.milaboratory.core.clone.CloneSetClusteredImpl
com.milaboratory.core.clone.com.milaboratory.core.clone.CloneSetClusteredImpl.orig
com.milaboratory.core.clone.com.milaboratory.core.clone.CloneSetImpl
com.milaboratory.core.clone.com.milaboratory.core.clone.package-info
com.milaboratory.core.io
com.milaboratory.core.io.com.milaboratory.core.io.AbstractBinaryContainerIO
com.milaboratory.core.io.com.milaboratory.core.io.BinaryContainerIO
com.milaboratory.core.io.com.milaboratory.core.io.BinaryContainerReader
com.milaboratory.core.io.com.milaboratory.core.io.BinaryContainerWriter
com.milaboratory.core.io.com.milaboratory.core.io.DataInputPositioned
com.milaboratory.core.io.com.milaboratory.core.io.DataOutputPositioned
com.milaboratory.core.io.com.milaboratory.core.io.FixedBlockSize
com.milaboratory.core.io.com.milaboratory.core.io.IOUtill
com.milaboratory.core.io.com.milaboratory.core.io.IndexedContainerInput
com.milaboratory.core.io.com.milaboratory.core.io.IndexedContainerOutput
com.milaboratory.core.io.com.milaboratory.core.io.SignatureCheckError
com.milaboratory.core.io.com.milaboratory.core.io.WrongStructureException
com.milaboratory.core.io.impl
com.milaboratory.core.io.impl.com.milaboratory.core.io.impl.AbstractIndexedContainerInput
com.milaboratory.core.io.impl.com.milaboratory.core.io.impl.BBBackedLongArrayList
com.milaboratory.core.io.impl.com.milaboratory.core.io.impl.ByteArrayIndexedContainerInput
com.milaboratory.core.io.impl.com.milaboratory.core.io.impl.ByteBufferHolder
com.milaboratory.core.io.impl.com.milaboratory.core.io.impl.ByteBufferHolderCache
com.milaboratory.core.io.impl.com.milaboratory.core.io.impl.DataInputPositionedStream
com.milaboratory.core.io.impl.com.milaboratory.core.io.impl.DataOutputPositionedStream
com.milaboratory.core.io.impl.com.milaboratory.core.io.impl.FileIndexedContainerInput
com.milaboratory.core.io.impl.com.milaboratory.core.io.impl.FileIndexedContainerOutput
com.milaboratory.core.io.impl.com.milaboratory.core.io.impl.IByteArrayOutputStream
com.milaboratory.core.io
com.milaboratory.core.io.com.milaboratory.core.io.package-info
com.milaboratory.core.io.serializers
com.milaboratory.core.io.serializers.com.milaboratory.core.io.serializers.Bit2ArrayIO
com.milaboratory.core.io.serializers.com.milaboratory.core.io.serializers.BitArrayIO
com.milaboratory.core.io.serializers.com.milaboratory.core.io.serializers.NucleotideSQPairIO
com.milaboratory.core.io.serializers.com.milaboratory.core.io.serializers.NucleotideSequenceIO
com.milaboratory.core.io.serializers.com.milaboratory.core.io.serializers.SegmentGroupContainerIO
com.milaboratory.core.io.serializers.com.milaboratory.core.io.serializers.SequenceQualityIO
com.milaboratory.core.io.util
com.milaboratory.core.io.util.com.milaboratory.core.io.util.ClassUtils
com.milaboratory.core.io.util.com.milaboratory.core.io.util.PrimitiveArrayIO
com.milaboratory.core.io.util.com.milaboratory.core.io.util.PrimitiveIO
com.milaboratory.core.io.util.com.milaboratory.core.io.util.PrimitiveMapIO
com.milaboratory.core.segment
com.milaboratory.core.segment.com.milaboratory.core.segment.Allele
com.milaboratory.core.segment.com.milaboratory.core.segment.AlleleSet
com.milaboratory.core.segment.com.milaboratory.core.segment.CDR
com.milaboratory.core.segment.com.milaboratory.core.segment.Chain
com.milaboratory.core.segment.com.milaboratory.core.segment.DefaultSegmentLibrary
com.milaboratory.core.segment.com.milaboratory.core.segment.Gene
com.milaboratory.core.segment.com.milaboratory.core.segment.MD5ChecksumTestFail
com.milaboratory.core.segment.com.milaboratory.core.segment.Molecule
com.milaboratory.core.segment.com.milaboratory.core.segment.Segment
com.milaboratory.core.segment.com.milaboratory.core.segment.SegmentFamily
com.milaboratory.core.segment.com.milaboratory.core.segment.SegmentGroup
com.milaboratory.core.segment.com.milaboratory.core.segment.SegmentGroupContainer
com.milaboratory.core.segment.com.milaboratory.core.segment.SegmentGroupType
com.milaboratory.core.segment.com.milaboratory.core.segment.SegmentLibrary
com.milaboratory.core.segment.com.milaboratory.core.segment.SegmentSet
com.milaboratory.core.segment.com.milaboratory.core.segment.SegmentUtils
com.milaboratory.core.segment.com.milaboratory.core.segment.Species
com.milaboratory.core.segment.com.milaboratory.core.segment.SpeciesSegmentGroup
com.milaboratory.core.segment.com.milaboratory.core.segment.package-info
com.milaboratory.core.sequence
com.milaboratory.core.sequence.com.milaboratory.core.sequence.Alphabet
com.milaboratory.core.sequence.com.milaboratory.core.sequence.NucleotideSQPair
com.milaboratory.core.sequence.com.milaboratory.core.sequence.Sequence
com.milaboratory.core.sequence.com.milaboratory.core.sequence.SequenceBuilder
com.milaboratory.core.sequence.com.milaboratory.core.sequence.SequenceBuilderFactory
com.milaboratory.core.sequence.com.milaboratory.core.sequence.SequenceQuality
com.milaboratory.core.sequence.com.milaboratory.core.sequence.SequencingErrorType
com.milaboratory.core.sequence.aminoacid
com.milaboratory.core.sequence.aminoacid.com.milaboratory.core.sequence.aminoacid.AminoAcidAlphabet
com.milaboratory.core.sequence.aminoacid.com.milaboratory.core.sequence.aminoacid.AminoAcidSequence
com.milaboratory.core.sequence.aminoacid.com.milaboratory.core.sequence.aminoacid.AminoAcidSequenceImpl
com.milaboratory.core.sequence.aminoacid.com.milaboratory.core.sequence.aminoacid.CDRAminoAcidAlphabet
com.milaboratory.core.sequence.aminoacid.com.milaboratory.core.sequence.aminoacid.CDRAminoAcidSequence
com.milaboratory.core.sequence.aminoacid.com.milaboratory.core.sequence.aminoacid.CDRTriplet
com.milaboratory.core.sequence.motif
com.milaboratory.core.sequence.motif.com.milaboratory.core.sequence.motif.LowQualityIndicator
com.milaboratory.core.sequence.motif.com.milaboratory.core.sequence.motif.LowQualityIndicatorProvider
com.milaboratory.core.sequence.motif.com.milaboratory.core.sequence.motif.NucleotideMotif
com.milaboratory.core.sequence.motif.com.milaboratory.core.sequence.motif.NucleotideMotifBuilder
com.milaboratory.core.sequence.motif.com.milaboratory.core.sequence.motif.NucleotideMotifSearchAdvanced
com.milaboratory.core.sequence.motif.com.milaboratory.core.sequence.motif.NucleotideMotifSearchAdvancedWrapper
com.milaboratory.core.sequence.motif.com.milaboratory.core.sequence.motif.NucleotideMotifSearchParameters
com.milaboratory.core.sequence.motif.com.milaboratory.core.sequence.motif.NucleotideSQPairProvider
com.milaboratory.core.sequence.motif.com.milaboratory.core.sequence.motif.NucleotideWildcards
com.milaboratory.core.sequence.motif.com.milaboratory.core.sequence.motif.SSequencingReadBindings
com.milaboratory.core.sequence.nucleotide
com.milaboratory.core.sequence.nucleotide.com.milaboratory.core.sequence.nucleotide.AbstarctNucleotideSequence
com.milaboratory.core.sequence.nucleotide.com.milaboratory.core.sequence.nucleotide.NucleotideAlphabet
com.milaboratory.core.sequence.nucleotide.com.milaboratory.core.sequence.nucleotide.NucleotideAlphabetWithN
com.milaboratory.core.sequence.nucleotide.com.milaboratory.core.sequence.nucleotide.NucleotideSequence
com.milaboratory.core.sequence.nucleotide.com.milaboratory.core.sequence.nucleotide.NucleotideSequenceBuilder
com.milaboratory.core.sequence.nucleotide.com.milaboratory.core.sequence.nucleotide.NucleotideSequenceImpl
com.milaboratory.core.sequence
com.milaboratory.core.sequence.com.milaboratory.core.sequence.package-info
com.milaboratory.core.sequence.quality
com.milaboratory.core.sequence.quality.com.milaboratory.core.sequence.quality.SequenceQualityPhred
com.milaboratory.core.sequence.tree
com.milaboratory.core.sequence.tree.com.milaboratory.core.sequence.tree.LinearMinPenalty
com.milaboratory.core.sequence.tree.com.milaboratory.core.sequence.tree.NucleotideSQPairSet
com.milaboratory.core.sequence.tree.com.milaboratory.core.sequence.tree.NucleotideSQPairSetEvent
com.milaboratory.core.sequence.tree.com.milaboratory.core.sequence.tree.NucleotideSQPairSetEventType
com.milaboratory.core.sequence.tree.com.milaboratory.core.sequence.tree.NucleotideSQPairSetListener
com.milaboratory.core.sequence.tree.com.milaboratory.core.sequence.tree.NucleotideSequencePenaltyTreeSet
com.milaboratory.core.sequence.tree.com.milaboratory.core.sequence.tree.Penalty
com.milaboratory.core.sequence.tree.com.milaboratory.core.sequence.tree.SequenceTreeMap
com.milaboratory.core.sequence.util
com.milaboratory.core.sequence.util.com.milaboratory.core.sequence.util.NucleotideRCSequence
com.milaboratory.core.sequence.util.com.milaboratory.core.sequence.util.NucleotideSequenceGenerator
com.milaboratory.core.sequence.util.com.milaboratory.core.sequence.util.NucleotideSubSequence
com.milaboratory.core.sequence.util.com.milaboratory.core.sequence.util.SequenceMismatch
com.milaboratory.core.sequence.util.com.milaboratory.core.sequence.util.SequenceMismatchCollector
com.milaboratory.core.sequence.util.com.milaboratory.core.sequence.util.SequenceQualityUtils
com.milaboratory.core.sequence.util.com.milaboratory.core.sequence.util.SequencesUtils
com.milaboratory.core.sequence.util.com.milaboratory.core.sequence.util.SubSequenceQuality
com.milaboratory.core.sequence.util.com.milaboratory.core.sequence.util.Translator
com.milaboratory.core.sequencing
com.milaboratory.core.sequencing.com.milaboratory.core.sequencing.SequencingUtils
com.milaboratory.core.sequencing.io
com.milaboratory.core.sequencing.io.com.milaboratory.core.sequencing.io.PSequencingDataReader
com.milaboratory.core.sequencing.io.com.milaboratory.core.sequencing.io.SSequencingDataReader
com.milaboratory.core.sequencing.io.com.milaboratory.core.sequencing.io.SSequencingDataReaderWithFlowgram
com.milaboratory.core.sequencing.io.com.milaboratory.core.sequencing.io.SequencingDataReader
com.milaboratory.core.sequencing.io.fasta
com.milaboratory.core.sequencing.io.fasta.com.milaboratory.core.sequencing.io.fasta.FastaItem
com.milaboratory.core.sequencing.io.fasta.com.milaboratory.core.sequencing.io.fasta.FastaItemsReader
com.milaboratory.core.sequencing.io.fasta.com.milaboratory.core.sequencing.io.fasta.FastaReader
com.milaboratory.core.sequencing.io.fasta.com.milaboratory.core.sequencing.io.fasta.FastaWriter
com.milaboratory.core.sequencing.io.fastq
com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.Casava18InfoProvider
com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.IlluminaInfoProvider
com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.IlluminaInfoProviderFactory
com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.IlluminaReadInfo
com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.IlluminaReadInfoImpl
com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.NucleotideSQPairTrimmer
com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.PFastqReader
com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.PFastqWriter
com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.PSequencingReadsTrimmer
com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.SFastqReader
com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.SFastqWriter
com.milaboratory.core.sequencing.io.fastq.com.milaboratory.core.sequencing.io.fastq.SSequencingReadTrimmer
com.milaboratory.core.sequencing.io.fastq.quality
com.milaboratory.core.sequencing.io.fastq.quality.com.milaboratory.core.sequencing.io.fastq.quality.AbstractSequenceQualityFactory
com.milaboratory.core.sequencing.io.fastq.quality.com.milaboratory.core.sequencing.io.fastq.quality.PhredSequenceQualityFactory
com.milaboratory.core.sequencing.io.fastq.quality.com.milaboratory.core.sequencing.io.fastq.quality.QualityStringFormat
com.milaboratory.core.sequencing.io.fastq.quality.com.milaboratory.core.sequencing.io.fastq.quality.SequenceQualityFactory
com.milaboratory.core.sequencing.io.fastq.quality.com.milaboratory.core.sequencing.io.fastq.quality.WrongQualityStringException
com.milaboratory.core.sequencing.io.sff
com.milaboratory.core.sequencing.io.sff.com.milaboratory.core.sequencing.io.sff.SFFClipper
com.milaboratory.core.sequencing.io.sff.com.milaboratory.core.sequencing.io.sff.SFFHeader
com.milaboratory.core.sequencing.io.sff.com.milaboratory.core.sequencing.io.sff.SFFRAWRead
com.milaboratory.core.sequencing.io.sff.com.milaboratory.core.sequencing.io.sff.SFFReader
com.milaboratory.core.sequencing
com.milaboratory.core.sequencing.com.milaboratory.core.sequencing.package-info
com.milaboratory.core.sequencing.read
com.milaboratory.core.sequencing.read.com.milaboratory.core.sequencing.read.PDataSerRecord
com.milaboratory.core.sequencing.read.com.milaboratory.core.sequencing.read.PSequencingRead
com.milaboratory.core.sequencing.read.com.milaboratory.core.sequencing.read.PSequencingReadImpl
com.milaboratory.core.sequencing.read.com.milaboratory.core.sequencing.read.SSequencingRead
com.milaboratory.core.sequencing.read.com.milaboratory.core.sequencing.read.SSequencingReadImpl
com.milaboratory.core.sequencing.read.com.milaboratory.core.sequencing.read.SSequencingReadWithFlowgram
com.milaboratory.core.sequencing.read.com.milaboratory.core.sequencing.read.SSequencingReadWithFlowgramImpl
com.milaboratory.core.sequencing.read.com.milaboratory.core.sequencing.read.SequencingRead
com.milaboratory.mitcr
com.milaboratory.mitcr.com.milaboratory.mitcr.SimpleTest
com.milaboratory.mitcr.com.milaboratory.mitcr.SimpleTest.orig
com.milaboratory.mitcr.cdrextraction
com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CDR3ExtractionResult
com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CDR3ExtractionResultUtils
com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CDR3Extractor
com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CDR3ExtractorFactory
com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CDR3ExtractorFactoryFromSQPair
com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CDR3ExtractorFactoryFromSRead
com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CDR3ExtractorFromPRead
com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CDR3ExtractorFromSQPair
com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CDR3ExtractorFromSRead
com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CDR3ExtractorListener
com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CDR3ExtractorParameters
com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.CoreCDR3Extractor
com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.Strand
com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.TargetRead
com.milaboratory.mitcr.cdrextraction.com.milaboratory.mitcr.cdrextraction.package-info
com.milaboratory.mitcr.cli
com.milaboratory.mitcr.cli.com.milaboratory.mitcr.cli.BuildInformation
com.milaboratory.mitcr.cli.com.milaboratory.mitcr.cli.BuildInformationProvider
com.milaboratory.mitcr.cli.com.milaboratory.mitcr.cli.ExportDetalizationLevel
com.milaboratory.mitcr.cli.com.milaboratory.mitcr.cli.Main
com.milaboratory.mitcr.cli.com.milaboratory.mitcr.cli.ParametersIO
com.milaboratory.mitcr.cli.com.milaboratory.mitcr.cli.ReportExporter
com.milaboratory.mitcr.cli.com.milaboratory.mitcr.cli.TabDelimitedExporter
com.milaboratory.mitcr.cli.com.milaboratory.mitcr.cli.TabDelimitedImporter
com.milaboratory.mitcr.clonegenerator
com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.AccumulatorClone
com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.BarcodeAggregator
com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.BasicCloneGenerator
com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.BasicCloneGeneratorParameters
com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.CloneGenerator
com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.CloneGeneratorFactory
com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.CloneGeneratorListener
com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.CloneGeneratorParameters
com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.CloneGeneratorParametersDeserializer
com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.InMemoryResultAccumulator
com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.LQFilteringOffCloneGenerator
com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.LQFilteringOffCloneGeneratorParameters
com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.LQMappingCloneGenerator
com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.LQMappingCloneGeneratorParameters
com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.OnHDDResultAccumulator
com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.ResultsAccumulator
com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.SequencingReadLink
com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.TreePackingInfo
com.milaboratory.mitcr.clonegenerator.com.milaboratory.mitcr.clonegenerator.package-info
com.milaboratory.mitcr.clsexport
com.milaboratory.mitcr.clsexport.com.milaboratory.mitcr.clsexport.AbstractCloneSetMetadata
com.milaboratory.mitcr.clsexport.com.milaboratory.mitcr.clsexport.AbstractCloneSetMetadataIO
com.milaboratory.mitcr.clsexport.com.milaboratory.mitcr.clsexport.CloneClusterData
com.milaboratory.mitcr.clsexport.com.milaboratory.mitcr.clsexport.CloneClusterDataIO
com.milaboratory.mitcr.clsexport.com.milaboratory.mitcr.clsexport.CloneIO
com.milaboratory.mitcr.clsexport.com.milaboratory.mitcr.clsexport.ClsExporter
com.milaboratory.mitcr.clsexport.com.milaboratory.mitcr.clsexport.DataSetMetadata
com.milaboratory.mitcr.clsexport.com.milaboratory.mitcr.clsexport.DataSetMetadataIO
com.milaboratory.mitcr.clsexport.com.milaboratory.mitcr.clsexport.SCloneSetMetadata
com.milaboratory.mitcr.clsexport.com.milaboratory.mitcr.clsexport.SCloneSetMetadataIO
com.milaboratory.mitcr.clusterization
com.milaboratory.mitcr.clusterization.com.milaboratory.mitcr.clusterization.CloneClusterizationType
com.milaboratory.mitcr.clusterization.com.milaboratory.mitcr.clusterization.CloneClusterizer
com.milaboratory.mitcr.clusterization.com.milaboratory.mitcr.clusterization.CloneClusterizerFactory
com.milaboratory.mitcr.clusterization.com.milaboratory.mitcr.clusterization.ClusterizationListener
com.milaboratory.mitcr.clusterization.com.milaboratory.mitcr.clusterization.DummyCloneClusterizer
com.milaboratory.mitcr.clusterization.com.milaboratory.mitcr.clusterization.MonolayerCluster
com.milaboratory.mitcr.clusterization.com.milaboratory.mitcr.clusterization.PenaltyBasedFastClusterizer
com.milaboratory.mitcr.clusterization.com.milaboratory.mitcr.clusterization.PenaltyCalculator
com.milaboratory.mitcr.clusterization.com.milaboratory.mitcr.clusterization.package-info
com.milaboratory.mitcr.clusterization.penalty
com.milaboratory.mitcr.clusterization.penalty.com.milaboratory.mitcr.clusterization.penalty.NoClusterizationPenalty
com.milaboratory.mitcr.clusterization.penalty.com.milaboratory.mitcr.clusterization.penalty.OneMismatchPenaltyCalculator
com.milaboratory.mitcr.clusterization.penalty.com.milaboratory.mitcr.clusterization.penalty.VDJExplicitPenalty
com.milaboratory.mitcr.clusterization.penalty.com.milaboratory.mitcr.clusterization.penalty.VJMismatchPenalty
com.milaboratory.mitcr.pipeline
com.milaboratory.mitcr.pipeline.com.milaboratory.mitcr.pipeline.AnalysisListener
com.milaboratory.mitcr.pipeline.com.milaboratory.mitcr.pipeline.AnalysisListenerCombiner
com.milaboratory.mitcr.pipeline.com.milaboratory.mitcr.pipeline.DefaultAnalysisListener
com.milaboratory.mitcr.pipeline.com.milaboratory.mitcr.pipeline.FullPipeline
com.milaboratory.mitcr.pipeline.com.milaboratory.mitcr.pipeline.ParameterPresets
com.milaboratory.mitcr.pipeline.com.milaboratory.mitcr.pipeline.Parameters
com.milaboratory.mitcr.pipeline.com.milaboratory.mitcr.pipeline.package-info
com.milaboratory.mitcr.qualitystrategy
com.milaboratory.mitcr.qualitystrategy.com.milaboratory.mitcr.qualitystrategy.DummyQualityInterpretationStrategy
com.milaboratory.mitcr.qualitystrategy.com.milaboratory.mitcr.qualitystrategy.GBNSBothSidesNucleotideInfoProvider
com.milaboratory.mitcr.qualitystrategy.com.milaboratory.mitcr.qualitystrategy.GBNSNucleotideInfoProvider
com.milaboratory.mitcr.qualitystrategy.com.milaboratory.mitcr.qualitystrategy.GBNSUtils
com.milaboratory.mitcr.qualitystrategy.com.milaboratory.mitcr.qualitystrategy.GoodBadNucleotideSequence
com.milaboratory.mitcr.qualitystrategy.com.milaboratory.mitcr.qualitystrategy.GoodBadNucleotideSequenceProvider
com.milaboratory.mitcr.qualitystrategy.com.milaboratory.mitcr.qualitystrategy.IlluminaQualityInterpretationStrategy
com.milaboratory.mitcr.qualitystrategy.com.milaboratory.mitcr.qualitystrategy.QualityInterpretationStrategy
com.milaboratory.mitcr.qualitystrategy.com.milaboratory.mitcr.qualitystrategy.QualityInterpretationStrategyDeserializer
com.milaboratory.mitcr.qualitystrategy.com.milaboratory.mitcr.qualitystrategy.package-info
com.milaboratory.mitcr.statistics
com.milaboratory.mitcr.statistics.com.milaboratory.mitcr.statistics.AnalysisStatisticsAggregator
com.milaboratory.mitcr.statistics.com.milaboratory.mitcr.statistics.CloneSetQualityControl
com.milaboratory.mitcr.util.evolver
com.milaboratory.mitcr.util.evolver.com.milaboratory.mitcr.util.evolver.AbstractGenerator
com.milaboratory.mitcr.util.evolver.com.milaboratory.mitcr.util.evolver.ConditionsProvider
com.milaboratory.mitcr.util.evolver.com.milaboratory.mitcr.util.evolver.Generator
com.milaboratory.mitcr.util.evolver.com.milaboratory.mitcr.util.evolver.Reactor
com.milaboratory.mitcr.vdjmapping
com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.AlignmentDirection
com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.DSegmentMapper
com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.DSegmentMapperFactory
com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.DSegmentMapperParameters
com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.PointSegmentMapper
com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.SearchDirection
com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.SegmentMapper
com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.SegmentMappingResult
com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.SimplestAlignment
com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.VDJSegmentsMapper
com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.VDJSegmentsMapperFactory
com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.VDJSegmentsMappingResult
com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.VJMapperListener
com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.VJSegmentMapper
com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.VJSegmentMapperFactory
com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.VJSegmentMapperParameters
com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.VJSegmentMappingResult
com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.VJSegmentMappingResultFormatter
com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.VJSegmentsMapperAdapter
com.milaboratory.mitcr.vdjmapping.ntree
com.milaboratory.mitcr.vdjmapping.ntree.com.milaboratory.mitcr.vdjmapping.ntree.NTreeNode
com.milaboratory.mitcr.vdjmapping.ntree.com.milaboratory.mitcr.vdjmapping.ntree.NTreeNodeGenerator
com.milaboratory.mitcr.vdjmapping.ntree.com.milaboratory.mitcr.vdjmapping.ntree.NTreeNodeGeneratorBadDeletion
com.milaboratory.mitcr.vdjmapping.ntree.com.milaboratory.mitcr.vdjmapping.ntree.NTreeNodeGeneratorBadMismatch
com.milaboratory.mitcr.vdjmapping.ntree.com.milaboratory.mitcr.vdjmapping.ntree.NTreeNodeGeneratorBadMismatch3B
com.milaboratory.mitcr.vdjmapping.ntree.com.milaboratory.mitcr.vdjmapping.ntree.NTreeNodeGeneratorMatchOnly
com.milaboratory.mitcr.vdjmapping.ntree.com.milaboratory.mitcr.vdjmapping.ntree.NTreeSlider
com.milaboratory.mitcr.vdjmapping.ntree.com.milaboratory.mitcr.vdjmapping.ntree.NucleotideInfo
com.milaboratory.mitcr.vdjmapping.ntree.com.milaboratory.mitcr.vdjmapping.ntree.NucleotideInfoProvider
com.milaboratory.mitcr.vdjmapping
com.milaboratory.mitcr.vdjmapping.com.milaboratory.mitcr.vdjmapping.package-info
com.milaboratory.mitcr.vdjmapping.tree
com.milaboratory.mitcr.vdjmapping.tree.com.milaboratory.mitcr.vdjmapping.tree.CoreVJSegmentMapper
com.milaboratory.mitcr.vdjmapping.tree.com.milaboratory.mitcr.vdjmapping.tree.OneDirectionSegmentMapper
com.milaboratory.mitcr.vdjmapping.tree.com.milaboratory.mitcr.vdjmapping.tree.STree
com.milaboratory.mitcr.vdjmapping.tree.com.milaboratory.mitcr.vdjmapping.tree.STreeResultHolder
com.milaboratory.mitcr.vdjmapping.tree.com.milaboratory.mitcr.vdjmapping.tree.SmartAlignmentSegmentMapper
com.milaboratory.mitcr.vdjmapping.tree.com.milaboratory.mitcr.vdjmapping.tree.SmartAlignmentSegmentMapperV2
com.milaboratory.mitcr.vdjmapping.tree.com.milaboratory.mitcr.vdjmapping.tree.UniDirectionSegmentMapper
com.milaboratory.mitcr.vdjmapping.trivial
com.milaboratory.mitcr.vdjmapping.trivial.com.milaboratory.mitcr.vdjmapping.trivial.OneSideAligner
com.milaboratory.mitcr.vdjmapping.trivial.com.milaboratory.mitcr.vdjmapping.trivial.OneSideAlignmentResult
com.milaboratory.mitcr.vdjmapping.trivial.com.milaboratory.mitcr.vdjmapping.trivial.TrivialSegmentMapper
com.milaboratory.mitcr.vdjmapping.trivial.com.milaboratory.mitcr.vdjmapping.trivial.TrivialSegmentMapperFactory
com.milaboratory.util
com.milaboratory.util.com.milaboratory.util.Bit2Array
com.milaboratory.util.com.milaboratory.util.BitArray
com.milaboratory.util.com.milaboratory.util.CanReportProgress
com.milaboratory.util.com.milaboratory.util.CanReportProgressAndStage
com.milaboratory.util.com.milaboratory.util.CompressionType
com.milaboratory.util.com.milaboratory.util.CoordProxy
com.milaboratory.util.com.milaboratory.util.Factory
com.milaboratory.util.com.milaboratory.util.HashFunctions
com.milaboratory.util.com.milaboratory.util.IndexRange
com.milaboratory.util.com.milaboratory.util.IntArrayList
com.milaboratory.util.com.milaboratory.util.LongArrayList
com.milaboratory.util.com.milaboratory.util.Math
com.milaboratory.util.com.milaboratory.util.NullOutputStream
com.milaboratory.util.com.milaboratory.util.ProgressReporter
com.milaboratory.util.com.milaboratory.util.ProgressReporterFactory
com.milaboratory.util.com.milaboratory.util.TablePrintStreamAdapter
com.milaboratory.util.com.milaboratory.util.XMLException
.mitcr
.segments.gsl




© 2015 - 2024 Weber Informatics LLC | Privacy Policy