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com.xmlcalabash.extensions.RDFStep Maven / Gradle / Ivy
package com.xmlcalabash.extensions;
import com.hp.hpl.jena.query.Dataset;
import com.hp.hpl.jena.query.DatasetFactory;
import com.hp.hpl.jena.rdf.model.AnonId;
import com.hp.hpl.jena.rdf.model.Literal;
import com.hp.hpl.jena.rdf.model.Model;
import com.hp.hpl.jena.rdf.model.Property;
import com.hp.hpl.jena.rdf.model.RDFNode;
import com.hp.hpl.jena.rdf.model.Resource;
import com.hp.hpl.jena.rdf.model.Statement;
import com.hp.hpl.jena.rdf.model.StmtIterator;
import com.xmlcalabash.core.XProcConstants;
import com.xmlcalabash.core.XProcException;
import com.xmlcalabash.core.XProcRuntime;
import com.xmlcalabash.io.ReadablePipe;
import com.xmlcalabash.io.WritablePipe;
import com.xmlcalabash.library.DefaultStep;
import com.xmlcalabash.runtime.XAtomicStep;
import com.xmlcalabash.util.RelevantNodes;
import com.xmlcalabash.util.S9apiUtils;
import com.xmlcalabash.util.TreeWriter;
import net.sf.saxon.s9api.Axis;
import net.sf.saxon.s9api.QName;
import net.sf.saxon.s9api.SaxonApiException;
import net.sf.saxon.s9api.XdmNode;
import org.apache.jena.riot.Lang;
import org.apache.jena.riot.RiotReader;
import org.apache.jena.riot.lang.LangRIOT;
import org.apache.jena.riot.system.ErrorHandler;
import org.apache.jena.riot.system.ParserProfile;
import org.apache.jena.riot.system.RiotLib;
import org.apache.jena.riot.system.StreamRDF;
import org.apache.jena.riot.system.StreamRDFLib;
import java.io.IOException;
import java.net.MalformedURLException;
import java.net.URI;
import java.net.URL;
import java.net.URLConnection;
import java.util.Calendar;
import java.util.HashMap;
import java.util.Iterator;
import java.util.Random;
import java.util.regex.Pattern;
/**
* Created by IntelliJ IDEA.
* User: ndw
* Date: Oct 8, 2008
* Time: 7:44:07 AM
* To change this template use File | Settings | File Templates.
*/
public class RDFStep extends DefaultStep {
protected static final QName sem_triples = new QName("sem","http://marklogic.com/semantics", "triples");
protected static final QName sem_triple = new QName("sem","http://marklogic.com/semantics", "triple");
protected static final QName sem_subject = new QName("sem","http://marklogic.com/semantics", "subject");
protected static final QName sem_predicate = new QName("sem","http://marklogic.com/semantics", "predicate");
protected static final QName sem_object = new QName("sem","http://marklogic.com/semantics", "object");
protected static final QName cx_graph_name = new QName("cx", XProcConstants.NS_CALABASH_EX, "graph-name");
protected static final QName cx_database_uri = new QName("cx", XProcConstants.NS_CALABASH_EX, "database-uri");
protected static final QName _datatype = new QName("", "datatype");
protected static final QName _graph = new QName("", "graph");
protected static final QName _href = new QName("", "href");
protected static final QName _language = new QName("", "language");
protected static final QName _max_triples = new QName("", "max-triples-per-document");
protected static Pattern[] patterns = new Pattern[] {
Pattern.compile("&"), Pattern.compile("<"), Pattern.compile(">") };
protected ReadablePipe source = null;
protected WritablePipe result = null;
protected long limit = 100;
protected Random random = new Random();
protected long randomValue = random.nextLong();
protected Calendar cal = Calendar.getInstance();
protected long milliSecs = cal.getTimeInMillis();
protected boolean makeAnonymousNodes = false;
protected Dataset dataset = DatasetFactory.createMem();
protected HashMap anonids = new HashMap ();
public RDFStep(XProcRuntime runtime, XAtomicStep step) {
super(runtime,step);
}
public void setInput(String port, ReadablePipe pipe) {
source = pipe;
}
public void setOutput(String port, WritablePipe pipe) {
result = pipe;
}
public void reset() {
source.resetReader();
result.resetWriter();
}
public void run() throws SaxonApiException {
super.run();
if (getOption(_max_triples) != null) {
String limitStr = getOption(_max_triples).getString();
try {
limit = Integer.parseInt(limitStr);
} catch (NumberFormatException nfe) {
throw XProcException.dynamicError(19, "The max-triples-per-document on cx:rdf must be an integer");
}
}
}
protected Lang getLanguage(String href) {
String language = getOption(_language, (String) null);
if (language == null && href != null) {
String ext = null;
if (href.contains(".")) {
int pos = href.lastIndexOf(".");
ext = href.substring(pos);
}
if (ext == null) {
// nevermind
} else if (".rdf".equals(ext)) {
language = "rdf/xml";
} else if (".ttl".equals(ext)) {
language = "turtle";
} else if (".json".equals(ext)) {
language = "rdf/json";
} else if (".n3".equals(ext)) {
language = "n3";
} else if (".nt".equals(ext)) {
language = "ntriples";
} else if (".nq".equals(ext)) {
language = "nquads";
} else if (".trig".equals(ext)) {
language = "trig";
}
}
Lang lang = null;
if ("rdf/xml".equals(language)) {
lang = Lang.RDFXML;
} else if ("turtle".equals(language)) {
lang = Lang.TURTLE;
} else if ("rdf/json".equals(language)) {
lang = Lang.RDFJSON;
} else if ("n3".equals(language)) {
lang = Lang.N3;
} else if ("ntriples".equals(language)) {
lang = Lang.NTRIPLES;
} else if ("nquads".equals(language)) {
lang = Lang.NQUADS;
} else if ("trig".equals(language)) {
lang = Lang.TRIG;
}
if (lang == null) {
throw new XProcException("Could not deduce language for RDFLoad data: " + language);
}
return lang;
}
protected String databasePath() {
return "/triples/";
}
protected String nextDatabaseUri() {
return databasePath() + Long.toHexString(fuse(scramble(random.nextLong()),fuse(scramble(milliSecs),random.nextLong()))) + ".xml";
}
protected void dumpStatements(StmtIterator stmtIter, String graphName) {
TreeWriter tree = null;
long count = 0;
tree = new TreeWriter(runtime);
tree.startDocument(step.getNode().getBaseURI());
tree.addStartElement(sem_triples);
tree.startContent();
tree.addStartElement(cx_database_uri);
tree.startContent();
tree.addText(nextDatabaseUri());
tree.addEndElement();
if (graphName != null) {
tree.addStartElement(cx_graph_name);
tree.startContent();
tree.addText(graphName);
tree.addEndElement();
}
while (stmtIter.hasNext()) {
Statement stmt = stmtIter.nextStatement();
tree.addStartElement(sem_triple);
tree.startContent();
subject(tree, stmt.getSubject());
predicate(tree, stmt.getPredicate());
object(tree, stmt.getObject());
tree.addEndElement();
count += 1;
if (count >= limit) {
tree.addEndElement();
tree.endDocument();
XdmNode out = tree.getResult();
result.write(out);
tree = new TreeWriter(runtime);
tree.startDocument(step.getNode().getBaseURI());
tree.addStartElement(sem_triples);
tree.startContent();
tree.addStartElement(cx_database_uri);
tree.startContent();
tree.addText(nextDatabaseUri());
tree.addEndElement();
if (graphName != null) {
tree.addStartElement(cx_graph_name);
tree.startContent();
tree.addText(graphName);
tree.addEndElement();
}
count = 0;
}
}
if (count > 0) {
tree.addEndElement();
tree.endDocument();
XdmNode out = tree.getResult();
result.write(out);
}
}
private String resource(Resource rsrc) {
if (rsrc.isAnon()) {
return "http://marklogic.com/semantics/blank/" + Long.toHexString(
fuse(scramble((long)rsrc.hashCode()),fuse(scramble(milliSecs),randomValue)));
} else {
return escapeXml(rsrc.toString());
}
}
protected void subject(TreeWriter tree, Resource subj) {
tree.addStartElement(sem_subject);
tree.startContent();
tree.addText(resource(subj));
tree.addEndElement();
}
protected void predicate(TreeWriter tree, Resource pred) {
tree.addStartElement(sem_predicate);
tree.startContent();
tree.addText(resource(pred));
tree.addEndElement();
}
private void object(TreeWriter tree, RDFNode node) {
if (node.isLiteral()) {
Literal lit = node.asLiteral();
String text = lit.getString();
String lang = lit.getLanguage();
String type = lit.getDatatypeURI();
if (lang == null || "".equals(lang)) {
lang = null;
} else {
lang = escapeXml(lang);
}
if (lang == null) {
if (type == null) {
type = "http://www.w3.org/2001/XMLSchema#string";
}
type = escapeXml(type);
} else {
type = null;
}
tree.addStartElement(sem_object);
if (lang != null) {
tree.addAttribute(XProcConstants.xml_lang, lang);
}
if (type != null) {
tree.addAttribute(_datatype, type);
}
tree.startContent();
tree.addText(escapeXml(text));
tree.addEndElement();
} else if (node.isAnon()) {
String uri = "http://marklogic.com/semantics/blank/" + Long.toHexString(
fuse(scramble((long)node.hashCode()),fuse(scramble(milliSecs),randomValue)));
tree.addStartElement(sem_object);
tree.startContent();
tree.addText(uri);
tree.addEndElement();
} else {
tree.addStartElement(sem_object);
tree.startContent();
tree.addText(escapeXml(node.toString()));
tree.addEndElement();
}
}
protected static String escapeXml(String _in) {
if (null == _in){
return "";
}
return patterns[2].matcher(
patterns[1].matcher(
patterns[0].matcher(_in).replaceAll("&"))
.replaceAll("<")).replaceAll(">");
}
protected long rotl(long x, long y)
{
return (x<>(64-y));
}
protected long fuse(long a, long b)
{
return rotl(a,8)^b;
}
protected long scramble(long x)
{
return x^rotl(x,20)^rotl(x,40);
}
protected void loadRdf(Dataset dataset, XdmNode doc) {
Model model = dataset.getDefaultModel();
String graphName = null;
XdmNode root = S9apiUtils.getDocumentElement(doc);
if (root.getNodeName().equals(sem_triples)) {
for (XdmNode node : new RelevantNodes(null, root, Axis.CHILD)) {
if (node.getNodeName().equals(cx_graph_name)) {
graphName = node.getStringValue();
model = dataset.getNamedModel(graphName);
// ModelFactory.createDefaultModel();
} else if (node.getNodeName().equals(sem_triple)) {
XdmNode subj = null;
XdmNode pred = null;
XdmNode obj = null;
for (XdmNode child : new RelevantNodes(null, node, Axis.CHILD)) {
if (child.getNodeName().equals(sem_subject)) {
subj = child;
} else if (child.getNodeName().equals(sem_predicate)) {
pred = child;
} else if (child.getNodeName().equals(sem_object)) {
obj = child;
}
}
Resource rsrc = getResource(model, subj.getStringValue());
Property prop = model.createProperty(pred.getStringValue());
String objstr = obj.getStringValue();
String lang = obj.getAttributeValue(XProcConstants.xml_lang);
String datatype = obj.getAttributeValue(_datatype);
if (lang != null) {
Literal literal = model.createLiteral(objstr, lang);
rsrc.addProperty(prop, literal);
} else if (datatype != null) {
Literal literal = model.createTypedLiteral(objstr, datatype);
rsrc.addProperty(prop, literal);
} else {
Resource objrsrc = getResource(model, objstr);
rsrc.addProperty(prop, objrsrc);
}
} else {
// nop
}
}
} else {
throw new XProcException("Input document is not a sem:triples document");
}
}
protected Resource getResource(Model model, String uri) {
/* NOTE: You might think this is a good idea, but it's not; if you make them truly
anonymous in the model, then when they're reserialized they'll get different
/blank/ URIs and you'll never be able to match them up.
*/
if (makeAnonymousNodes && uri.startsWith("http://marklogic.com/semantics/blank/")) {
AnonId id = null;
if (anonids.containsKey(uri)) {
id = anonids.get(uri);
} else {
id = new AnonId();
anonids.put(uri, id);
}
return model.createResource(id);
} else {
return model.createResource(uri);
}
}
protected class ParserErrorHandler implements ErrorHandler {
String inputfn = "";
public ParserErrorHandler(String inputfn) {
this.inputfn = inputfn;
}
private String formatMessage(String message, long line, long col) {
String msg = inputfn + ":";
if (line >= 0) {
msg += line;
}
if (line >= 0 && col >= 0) {
msg += ":" + col;
}
return msg += " " + message;
}
@Override
public void warning(String message, long line, long col) {
//
}
@Override
public void error(String message, long line, long col) {
//
}
@Override
public void fatal(String message, long line, long col) {
//
}
}
}
