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A fork of the Apache Cassandra Project ready to embed Elasticsearch.
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/*
 * Licensed to the Apache Software Foundation (ASF) under one
 * or more contributor license agreements.  See the NOTICE file
 * distributed with this work for additional information
 * regarding copyright ownership.  The ASF licenses this file
 * to you under the Apache License, Version 2.0 (the
 * "License"); you may not use this file except in compliance
 * with the License.  You may obtain a copy of the License at
 *
 *     http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 */
package org.apache.cassandra.streaming.compress;

import java.io.EOFException;
import java.io.IOException;
import java.io.InputStream;
import java.util.Iterator;
import java.util.concurrent.ArrayBlockingQueue;
import java.util.concurrent.BlockingQueue;
import java.util.concurrent.ThreadLocalRandom;
import java.util.function.Supplier;

import com.google.common.collect.Iterators;
import com.google.common.primitives.Ints;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;

import io.netty.util.concurrent.FastThreadLocalThread;
import org.apache.cassandra.io.compress.CompressionMetadata;
import org.apache.cassandra.utils.ChecksumType;
import org.apache.cassandra.utils.WrappedRunnable;

/**
 * InputStream which reads data from underlining source with given {@link CompressionInfo}.
 */
public class CompressedInputStream extends InputStream
{

    private static final Logger logger = LoggerFactory.getLogger(CompressedInputStream.class);

    private final CompressionInfo info;
    // chunk buffer
    private final BlockingQueue dataBuffer;
    private final Supplier crcCheckChanceSupplier;

    // uncompressed bytes
    private final byte[] buffer;

    // offset from the beginning of the buffer
    protected long bufferOffset = 0;
    // current position in stream
    private long current = 0;
    // number of bytes in the buffer that are actually valid
    protected int validBufferBytes = -1;

    private final ChecksumType checksumType;

    // raw checksum bytes
    private final byte[] checksumBytes = new byte[4];

    /**
     * Indicates there was a problem when reading from source stream.
     * When this is added to the dataBuffer by the stream Reader,
     * it is expected that the readException variable is populated
     * with the cause of the error when reading from source stream, so it is
     * thrown to the consumer on subsequent read operation.
     */
    private static final byte[] POISON_PILL = new byte[0];

    protected volatile IOException readException = null;

    private long totalCompressedBytesRead;

    /**
     * @param source Input source to read compressed data from
     * @param info Compression info
     */
    public CompressedInputStream(InputStream source, CompressionInfo info, ChecksumType checksumType, Supplier crcCheckChanceSupplier)
    {
        this.info = info;
        this.buffer = new byte[info.parameters.chunkLength()];
        // buffer is limited to store up to 1024 chunks
        this.dataBuffer = new ArrayBlockingQueue<>(Math.min(info.chunks.length, 1024));
        this.crcCheckChanceSupplier = crcCheckChanceSupplier;
        this.checksumType = checksumType;

        new FastThreadLocalThread(new Reader(source, info, dataBuffer)).start();
    }

    private void decompressNextChunk() throws IOException
    {
        if (readException != null)
            throw readException;

        try
        {
            byte[] compressedWithCRC = dataBuffer.take();
            if (compressedWithCRC == POISON_PILL)
            {
                assert readException != null;
                throw readException;
            }
            decompress(compressedWithCRC);
        }
        catch (InterruptedException e)
        {
            throw new EOFException("No chunk available");
        }
    }

    @Override
    public int read() throws IOException
    {
        if (current >= bufferOffset + buffer.length || validBufferBytes == -1)
            decompressNextChunk();

        assert current >= bufferOffset && current < bufferOffset + validBufferBytes;

        return ((int) buffer[(int) (current++ - bufferOffset)]) & 0xff;
    }

    @Override
    public int read(byte[] b, int off, int len) throws IOException
    {
        long nextCurrent = current + len;

        if (current >= bufferOffset + buffer.length || validBufferBytes == -1)
            decompressNextChunk();

        assert nextCurrent >= bufferOffset;

        int read = 0;
        while (read < len)
        {
            int nextLen = Math.min((len - read), (int)((bufferOffset + validBufferBytes) - current));

            System.arraycopy(buffer, (int)(current - bufferOffset), b, off + read, nextLen);
            read += nextLen;

            current += nextLen;
            if (read != len)
                decompressNextChunk();
        }

        return len;
    }

    public void position(long position)
    {
        assert position >= current : "stream can only read forward.";
        current = position;
    }

    private void decompress(byte[] compressed) throws IOException
    {
        // uncompress
        validBufferBytes = info.parameters.getSstableCompressor().uncompress(compressed, 0, compressed.length - checksumBytes.length, buffer, 0);
        totalCompressedBytesRead += compressed.length;

        // validate crc randomly
        if (this.crcCheckChanceSupplier.get() >= 1d ||
            this.crcCheckChanceSupplier.get() > ThreadLocalRandom.current().nextDouble())
        {
            int checksum = (int) checksumType.of(compressed, 0, compressed.length - checksumBytes.length);

            System.arraycopy(compressed, compressed.length - checksumBytes.length, checksumBytes, 0, checksumBytes.length);
            if (Ints.fromByteArray(checksumBytes) != checksum)
                throw new IOException("CRC unmatched");
        }

        // buffer offset is always aligned
        bufferOffset = current & ~(buffer.length - 1);
    }

    public long getTotalCompressedBytesRead()
    {
        return totalCompressedBytesRead;
    }

    class Reader extends WrappedRunnable
    {
        private final InputStream source;
        private final Iterator chunks;
        private final BlockingQueue dataBuffer;

        Reader(InputStream source, CompressionInfo info, BlockingQueue dataBuffer)
        {
            this.source = source;
            this.chunks = Iterators.forArray(info.chunks);
            this.dataBuffer = dataBuffer;
        }

        protected void runMayThrow() throws Exception
        {
            byte[] compressedWithCRC;
            while (chunks.hasNext())
            {
                CompressionMetadata.Chunk chunk = chunks.next();

                int readLength = chunk.length + 4; // read with CRC
                compressedWithCRC = new byte[readLength];

                int bufferRead = 0;
                while (bufferRead < readLength)
                {
                    try
                    {
                        int r = source.read(compressedWithCRC, bufferRead, readLength - bufferRead);
                        if (r < 0)
                        {
                            readException = new EOFException("No chunk available");
                            dataBuffer.put(POISON_PILL);
                            return; // throw exception where we consume dataBuffer
                        }
                        bufferRead += r;
                    }
                    catch (IOException e)
                    {
                        logger.warn("Error while reading compressed input stream.", e);
                        readException = e;
                        dataBuffer.put(POISON_PILL);
                        return; // throw exception where we consume dataBuffer
                    }
                }
                dataBuffer.put(compressedWithCRC);
            }
        }
    }
}