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The TwelveMonkeys Core library. Contains common utility classes.
There is a newer version: 2.3
/*
 * Copyright (c) 2008, Harald Kuhr
 * All rights reserved.
 *
 * Redistribution and use in source and binary forms, with or without
 * modification, are permitted provided that the following conditions are met:
 *     * Redistributions of source code must retain the above copyright
 *       notice, this list of conditions and the following disclaimer.
 *     * Redistributions in binary form must reproduce the above copyright
 *       notice, this list of conditions and the following disclaimer in the
 *       documentation and/or other materials provided with the distribution.
 *     * Neither the name "TwelveMonkeys" nor the
 *       names of its contributors may be used to endorse or promote products
 *       derived from this software without specific prior written permission.
 *
 * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
 * "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
 * LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
 * A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR
 * CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
 * EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
 * PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
 * PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
 * LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
 * NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
 * SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
 */

package com.twelvemonkeys.io.enc;

import java.io.InputStream;
import java.io.IOException;
import java.io.EOFException;

/**
 * Decoder implementation for 16 bit-chunked Apple PackBits-like run-length
 * encoding.
 * 
 * This version of the decoder decodes chunk of 16 bit, instead of 8 bit.
 * This format is used in certain PICT files. 
 *
 * @see PackBitsDecoder
 *
 * @author Harald Kuhr
 * @version $Id: //depot/branches/personal/haraldk/twelvemonkeys/release-2/twelvemonkeys-core/src/main/java/com/twelvemonkeys/io/enc/PackBits16Decoder.java#2 $
 */
public final class PackBits16Decoder implements Decoder {
    // TODO: Refactor this into an option for the PackBitsDecoder?
    private final boolean mDisableNoop;

    private int mLeftOfRun;
    private boolean mSplitRun;
    private boolean mEOF;

    /**
     * Creates a {@code PackBitsDecoder}.
     */
    public PackBits16Decoder() {
        this(false);
    }

    /**
     * Creates a {@code PackBitsDecoder}.
     * 
     * As some implementations of PackBits-like encoders treat -128 as lenght of
     * a compressed run, instead of a no-op, it's possible to disable no-ops
     * for compatibility.
     * Should be used with caution, even though, most known encoders never write
     * no-ops in the compressed streams.
     *
     * @param pDisableNoop
     */
    public PackBits16Decoder(boolean pDisableNoop) {
        mDisableNoop = pDisableNoop;
    }

    /**
     * Decodes bytes from the given input stream, to the given buffer.
     *
     * @param pStream
     * @param pBuffer a byte array, minimum 128 (or 129 if no-op is disabled)
     * bytes long
     * @return The number of bytes decoded
     *
     * @throws java.io.IOException
     */
    public int decode(InputStream pStream, byte[] pBuffer) throws IOException {
        if (mEOF) {
            throw new EOFException("Unexpected end of PackBits stream");
        }

        int read = 0;
        final int max = pBuffer.length;

        while (read < max) {
            int n;
            if (mSplitRun) {
                // Continue run
                n = mLeftOfRun;
                mSplitRun = false;
            }
            else {
                // Start new run
                int b = pStream.read();
                if (b < 0) {
                    mEOF = true;
                    break;
                }
                n = (byte) b;
            }

            // Split run at or before max
            if (n >= 0 && 2 * (n + 1) + read > max) {
                mLeftOfRun = n;
                mSplitRun = true;
                break;
            }
            else if (n < 0 && 2 * (-n + 1) + read > max) {
                mLeftOfRun = n;
                mSplitRun = true;
                break;
            }

            try {
                if (n >= 0) {
                    // Copy next n + 1 shorts literally
                    int len = 2 * (n + 1);
                    readFully(pStream, pBuffer, read, len);
                    read += len;
                }
                // Allow -128 for compatibility, see above
                else if (mDisableNoop || n != -128) {
                    // Replicate the next short -n + 1 times
                    byte value1 = readByte(pStream);
                    byte value2 = readByte(pStream);

                    for (int i = -n + 1; i > 0; i--) {
                        pBuffer[read++] = value1;
                        pBuffer[read++] = value2;
                    }
                }
                // else NOOP (-128)
            }
            catch (IndexOutOfBoundsException e) {
                throw new DecodeException("Error in PackBits decompression, data seems corrupt", e);
            }
        }

        return read;
    }

    private static byte readByte(InputStream pStream) throws IOException {
        int read = pStream.read();
        if (read < 0) {
            throw new EOFException("Unexpected end of PackBits stream");
        }
        return (byte) read;
    }

    private static void readFully(InputStream pStream, byte[] pBuffer, int pOffset, int pLength) throws IOException {
        if (pLength < 0) {
            throw new IndexOutOfBoundsException();
        }
        int read = 0;
        while (read < pLength) {
            int count = pStream.read(pBuffer, pOffset + read, pLength - read);
            if (count < 0) {
                throw new EOFException("Unexpected end of PackBits stream");
            }
            read += count;
        }
    }
}