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OWLAPI-based implementation of the OntoDriver API
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/*
* JOPA
* Copyright (C) 2024 Czech Technical University in Prague
*
* This library is free software; you can redistribute it and/or
* modify it under the terms of the GNU Lesser General Public
* License as published by the Free Software Foundation; either
* version 3.0 of the License, or (at your option) any later version.
*
* This library is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
* Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public
* License along with this library.
*/
package cz.cvut.kbss.ontodriver.owlapi.list;
import cz.cvut.kbss.ontodriver.descriptor.ListDescriptor;
import cz.cvut.kbss.ontodriver.descriptor.ReferencedListDescriptor;
import cz.cvut.kbss.ontodriver.descriptor.ReferencedListValueDescriptor;
import cz.cvut.kbss.ontodriver.model.Axiom;
import cz.cvut.kbss.ontodriver.model.NamedResource;
import cz.cvut.kbss.ontodriver.owlapi.AxiomAdapter;
import cz.cvut.kbss.ontodriver.owlapi.OwlapiAdapter;
import cz.cvut.kbss.ontodriver.owlapi.change.TransactionalChange;
import cz.cvut.kbss.ontodriver.owlapi.connector.OntologySnapshot;
import org.semanticweb.owlapi.model.OWLOntology;
import java.util.ArrayList;
import java.util.List;
public class ReferencedListHandler {
static final int NEXT_NODE_GENERATION_THRESHOLD = 100;
protected final OwlapiAdapter owlapiAdapter;
protected final AxiomAdapter axiomAdapter;
protected final OWLOntology ontology;
protected final OntologySnapshot snapshot;
public ReferencedListHandler(OwlapiAdapter owlapiAdapter, OntologySnapshot snapshot) {
this.owlapiAdapter = owlapiAdapter;
this.axiomAdapter = new AxiomAdapter(snapshot.getDataFactory());
this.snapshot = snapshot;
this.ontology = snapshot.getOntology();
}
public List> loadList(ReferencedListDescriptor descriptor) {
final List> list = new ArrayList<>();
final ReferencedListIterator> iterator = iterator(descriptor);
while (iterator.hasNext()) {
list.add(iterator.next());
}
return list;
}
public void persistList(ReferencedListValueDescriptor descriptor) {
if (descriptor.getValues().isEmpty()) {
return;
}
verifyNotRdfList(descriptor);
owlapiAdapter.addTransactionalChanges(snapshot.applyChanges(createListAxioms(descriptor)));
}
/**
* OWL does no support RDF lists because it uses them internally, and it would not be possible to distinguish
* internal RDF lists from user-defined ones.
*
* @param descriptor Value descriptor
* @throws IllegalArgumentException When the descriptor describes an RDF list terminated by RDF nil
*/
private static void verifyNotRdfList(ReferencedListValueDescriptor> descriptor) {
if (descriptor.isTerminatedByNil()) {
throw new IllegalArgumentException("RDF nil-terminated lists are not supported by the OWL API driver.");
}
}
ReferencedListIterator iterator(ListDescriptor descriptor) {
assert descriptor instanceof ReferencedListDescriptor;
final ReferencedListDescriptor desc = (ReferencedListDescriptor) descriptor;
if (desc.getListProperty().isInferred() || desc.getNextNode().isInferred() ||
desc.getNodeContent().isInferred()) {
return new InferredReferencedListIterator<>(desc, snapshot, axiomAdapter);
} else {
return new ReferencedListIterator<>(desc, snapshot, axiomAdapter);
}
}
List createListAxioms(ReferencedListValueDescriptor descriptor) {
final ReferencedListNodeGenerator nodeGenerator = new ReferencedListNodeGenerator(descriptor, axiomAdapter, ontology);
NamedResource previousNode = descriptor.getListOwner();
nodeGenerator.setIndex(0);
for (V value : descriptor.getValues()) {
previousNode = nodeGenerator.addListNode(previousNode, value);
}
return nodeGenerator.getChanges();
}
public void updateList(ReferencedListValueDescriptor descriptor) {
if (descriptor.getValues().isEmpty()) {
removeObsoleteNodes(iterator(descriptor));
} else if (isOrigEmpty(descriptor)) {
persistList(descriptor);
} else {
verifyNotRdfList(descriptor);
mergeLists(descriptor);
}
}
boolean isOrigEmpty(ReferencedListValueDescriptor descriptor) {
final ReferencedListIterator it = iterator(descriptor);
return !it.hasNext();
}
void addNewNodes(ReferencedListValueDescriptor descriptor, int index, NamedResource lastNode) {
if (index >= descriptor.getValues().size()) {
return;
}
final ReferencedListNodeGenerator nodeGenerator = new ReferencedListNodeGenerator(descriptor, axiomAdapter, ontology);
nodeGenerator.setIndex(index);
for (; index < descriptor.getValues().size(); index++) {
final V nextValue = descriptor.getValues().get(index);
lastNode = nodeGenerator.addListNode(lastNode, nextValue);
}
owlapiAdapter.addTransactionalChanges(snapshot.applyChanges(nodeGenerator.getChanges()));
}
private void mergeLists(ReferencedListValueDescriptor descriptor) {
final ReferencedListIterator it = iterator(descriptor);
final List values = descriptor.getValues();
final List changes = new ArrayList<>(values.size());
int i = 0;
NamedResource lastNode = null;
while (it.hasNext() && i < values.size()) {
final V newValue = values.get(i);
final V currentValue = it.nextValue();
if (!newValue.equals(currentValue)) {
changes.addAll(snapshot.applyChanges(it.replaceNode(newValue)));
}
lastNode = it.getCurrentNode();
i++;
}
owlapiAdapter.addTransactionalChanges(changes);
assert lastNode != null;
removeObsoleteNodes(it);
addNewNodes(descriptor, i, lastNode);
}
private void removeObsoleteNodes(ReferencedListIterator iterator) {
if (!iterator.hasNext()) {
return;
}
final List changes = new ArrayList<>();
while (iterator.hasNext()) {
iterator.next();
changes.addAll(iterator.removeWithoutReconnect());
}
owlapiAdapter.addTransactionalChanges(snapshot.applyChanges(changes));
}
}
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