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A very fast POJO codec for MongoDB (used in conjunction with the Mongo Java Driver) that handles generic types as well as polymorphic class hierarchies

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package de.bild.codec;

import com.mongodb.client.model.Filters;
import de.bild.codec.annotations.Discriminator;
import de.bild.codec.annotations.DiscriminatorFallback;
import de.bild.codec.annotations.DiscriminatorKey;
import org.bson.*;
import org.bson.codecs.DecoderContext;
import org.bson.codecs.EncoderContext;
import org.bson.conversions.Bson;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;

import java.lang.reflect.Modifier;
import java.lang.reflect.Type;
import java.util.*;


public class PolymorphicReflectionCodec implements TypeCodec {
    private static final Logger LOGGER = LoggerFactory.getLogger(PolymorphicReflectionCodec.class);
    final Class clazz;
    final Map> discriminatorToCodec = new HashMap<>();
    final Map, PolymorphicCodec> classToCodec = new HashMap<>();
    final Map, String> mainDiscriminators = new HashMap<>();
    final Map, String> discriminatorKeys = new HashMap<>();
    final Set allDiscriminatorKeys = new HashSet<>();
    final Bson typeFilter;

    PolymorphicCodec fallBackCodec;
    final boolean isCollectible;

    public PolymorphicReflectionCodec(Type type, Set validTypes, TypeCodecRegistry typeCodecRegistry, PojoContext pojoContext) {
        this.clazz = AbstractTypeCodec.extractClass(type);
        boolean isAnyCodecCollectible = false;
        List allDiscriminatorKeyValueFilters = new ArrayList<>();
        for (Type validType : validTypes) {
            Class clazz = AbstractTypeCodec.extractClass(validType);
            // ignore interfaces and also ignore abstract classes
            if (!clazz.isInterface() && ! Modifier.isAbstract(clazz.getModifiers())) {
                String discriminatorKey = getDiscriminatorKeyForClass(clazz);
                boolean isFallBack = clazz.getDeclaredAnnotation(DiscriminatorFallback.class) != null;

                discriminatorKeys.putIfAbsent(clazz, discriminatorKey);
                allDiscriminatorKeys.add(discriminatorKey);

                PolymorphicCodec codecFor = pojoContext.resolve(validType, typeCodecRegistry);

                if (isFallBack) {
                    if (fallBackCodec != null) {
                        LOGGER.error("It is not allowed to declare more han one class within hierarchy as fallback. {} found already {}", clazz, codecFor.getEncoderClass());
                        throw new IllegalArgumentException("It is not allowed to declare more han one class within hierarchy as fallback." + clazz);
                    } else {
                        fallBackCodec = codecFor;
                        LOGGER.debug("Found fallback discriminator at class {}", clazz);
                    }
                }

                isAnyCodecCollectible |= codecFor.isCollectible();

                classToCodec.put(clazz, codecFor);

                Discriminator discriminatorAnnotation = clazz.getDeclaredAnnotation(Discriminator.class);
                String mainDiscriminator = clazz.getSimpleName();
                List allDiscriminators = new ArrayList<>();
                if (discriminatorAnnotation != null) {
                    if (discriminatorAnnotation.value() != null) {
                        mainDiscriminator = discriminatorAnnotation.value();
                    }
                    allDiscriminators.add(mainDiscriminator);
                    for (String alias : discriminatorAnnotation.aliases()) {
                        allDiscriminators.add(alias);
                    }
                } else {
                    allDiscriminators.add(mainDiscriminator);
                }

                for (String discriminator : allDiscriminators) {
                    allDiscriminatorKeyValueFilters.add(Filters.eq(discriminatorKey, discriminator));
                    PolymorphicCodec registeredCodec = this.discriminatorToCodec.putIfAbsent(discriminator, codecFor);
                    if (registeredCodec != null) {
                        LOGGER.warn("Cannot register multiple classes ({}, {}) for the same discriminator {} ", clazz, registeredCodec.getEncoderClass(), discriminator);
                        throw new IllegalArgumentException("Cannot register multiple classes (" + clazz + ", " + registeredCodec.getEncoderClass() + ") for the same discriminator " + discriminator);
                    }
                }
                mainDiscriminators.put(clazz, mainDiscriminator);
            }
        }

        //check for properties within classes that are named exactly like one of the used main discrimimnator keys
        for (PolymorphicCodec typeCodec : classToCodec.values()) {
            typeCodec.verifyFieldsNotNamedLikeAnyDiscriminatorKey(allDiscriminatorKeys);
        }
        this.typeFilter = Filters.or(allDiscriminatorKeyValueFilters);

        // if any of the subclass codecs need  application id generation, mark this codec as being collectible
        this.isCollectible = isAnyCodecCollectible;

        LOGGER.debug("Type {} -> Found the following matching types {}", type, discriminatorToCodec);
    }

    private String getDiscriminatorKeyForClass(Class clazz) {
        DiscriminatorKey discriminatorKey = clazz.getAnnotation(DiscriminatorKey.class);
        if (discriminatorKey != null && discriminatorKey.value() != null && discriminatorKey.value().length() > 0) {
            return discriminatorKey.value();
        }
        return "_t";
    }

    @Override
    public T decode(BsonReader reader, DecoderContext decoderContext) {
        if (reader.getCurrentBsonType() == BsonType.NULL) {
            reader.readNull();
            return null;
        }

        String discriminator = null;
        BsonReaderMark mark = reader.getMark();
        reader.readStartDocument();
        PolymorphicCodec codec = null;
        while (reader.readBsonType() != BsonType.END_OF_DOCUMENT) {
            String fieldName = reader.readName();
            if (allDiscriminatorKeys.contains(fieldName)) {
                discriminator = reader.readString();
                codec = getCodecForDiscriminator(discriminator);
                if (codec != null) {
                    //now check that the codec found actually has the correct
                    String discriminatorKeyForClass = discriminatorKeys.get(codec.getEncoderClass());
                    if (fieldName.equals(discriminatorKeyForClass)) {
                        break;
                    } else {
                        discriminator = null;
                        codec = null;
                        LOGGER.warn("Confusing. Skipping discriminator {} encoded in discriminator key {} since the " +
                                        "destination class is declaring a different discriminator key {}.",
                                discriminator, fieldName, discriminatorKeyForClass);
                    }
                }
            } else {
                reader.skipValue();
            }
        }

        mark.reset();

        // try fallback and legacy handling
        if (codec == null) {
            if (discriminator != null) {
                LOGGER.warn("At least one valid discriminator {} was found in database, but no matching codec found at all.", discriminator);
                reader.skipValue();
                return null; // todo: when switching to mongo db 3.6 an exception should be thrown instead of returning null
            }
            LOGGER.debug("No discriminator found in db for entity. Trying fallback. Fallback is {}", fallBackCodec);
            codec = fallBackCodec;
            if (codec == null) {
                LOGGER.debug("FallbackCodec is null. Still no matching codec found for discriminator {} within discriminatorToCodec {}", discriminator, discriminatorToCodec);
                if (classToCodec.values().size() == 1) {
                    codec = classToCodec.values().iterator().next();
                    LOGGER.debug("Found single possible codec {} for type {}", codec, getEncoderClass());
                }
                else {
                    LOGGER.info("Legacy handling to resolve entities in db without discriminator failed as there are (now?) more than one codecs available {}. One option is to use @DiscriminatrFallback at the legacy class or to add discriminators to the entities within the database. For now, return least specific codec.", classToCodec);
                    codec = classToCodec.get(getEncoderClass());
                    // if codec is still null at this point, something is broken -> should not happen
                    if (codec == null) {
                        LOGGER.warn("Skipping value. Can not determine codec for class {} from available codecs {}", getEncoderClass(), classToCodec);
                        reader.skipValue();
                        return null;// todo: when switching to mongo db 3.6 an exception should be thrown instead of returning null, so this entity can be skipped
                    }

                }
            }
        }


        return decodeWithType(reader, decoderContext, codec);
    }


    protected T decodeWithType(BsonReader reader, DecoderContext decoderContext, PolymorphicCodec polymorphicCodec) {
        return polymorphicCodec.decode(reader, decoderContext);
    }

    @Override
    public void encode(BsonWriter writer, T value, EncoderContext encoderContext) {
        if (value == null) {
            writer.writeNull();
        }
        else {
            writer.writeStartDocument();
            PolymorphicCodec codecForValue = getCodecForClass(value.getClass());
            if (codecForValue != null) {
                writer.writeName(discriminatorKeys.get(codecForValue.getEncoderClass()));
                writer.writeString(mainDiscriminators.get(codecForValue.getEncoderClass()));
                codecForValue.encodeFields(writer, value, encoderContext);
            } else {
                LOGGER.warn("The value to be encoded has the wrong type {}. This codec can only handle {}", value.getClass(), discriminatorToCodec);
            }
            writer.writeEndDocument();
        }
    }


    private PolymorphicCodec getCodecForDiscriminator(String discriminator) {
        if (discriminator == null) {
            LOGGER.warn("Discriminator key cannot be null.");
            return null;
        }
        return discriminatorToCodec.get(discriminator);
    }

    /**
     * Walks up class hierarchy until a registered codec (in the context of registered model classes) is found
     *
     * @return a codec responsible for a valid class within the class hierarchy
     */
    public PolymorphicCodec getCodecForClass(Class clazz) {
        if (clazz == null) {
            return null;
        }
        PolymorphicCodec codec = classToCodec.get(clazz);
        if (codec != null) {
            return codec;
        }
        return getCodecForClass(clazz.getSuperclass());
    }

    private PolymorphicCodec getCodecForValue(T document) {
        return getCodecForClass(document.getClass());
    }



    @Override
    public Class getEncoderClass() {
        return clazz;
    }

    @Override
    public boolean isCollectible() {
        return isCollectible;
    }

    @Override
    public T generateIdIfAbsentFromDocument(T document) {
        PolymorphicCodec codecForValue = getCodecForValue(document);
        if (codecForValue != null) {
            codecForValue.generateIdIfAbsentFromDocument(document);
        }
        return document;
    }

    @Override
    public boolean documentHasId(T document) {
        PolymorphicCodec codecForValue = getCodecForValue(document);
        if (codecForValue != null) {
            return codecForValue.documentHasId(document);
        }
        return false;
    }

    @Override
    public BsonValue getDocumentId(T document) {
        PolymorphicCodec codecForValue = getCodecForValue(document);
        if (codecForValue != null) {
            return codecForValue.getDocumentId(document);
        }
        return null;
    }

    /**
     * Example:
     * 
     *     Or Filter{
                filters=[
                    Filter{fieldName='_t', value=Square},
                    Filter{fieldName='_discriminatorKey', value=Circle}
                ]
            }
     * 
     *
     * @return the filter needed to find all types this codec is responsible for
     */
    @Override
    public Bson getTypeFilter() {
        return typeFilter;
    }
}




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