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Files of the artifact jannovar-core version 0.28 from the group de.charite.compbio.

Artifact jannovar-core
Group de.charite.compbio
Version 0.28


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Source code of jannovar-core version 0.28

META-INF
META-INF.META-INF.MANIFEST.MF
de.charite.compbio.jannovar
de.charite.compbio.jannovar.de.charite.compbio.jannovar.Immutable
de.charite.compbio.jannovar.de.charite.compbio.jannovar.JannovarException
de.charite.compbio.jannovar.de.charite.compbio.jannovar.UncheckedJannovarException
de.charite.compbio.jannovar.annotation
de.charite.compbio.jannovar.annotation.de.charite.compbio.jannovar.annotation.AllAnnotationListTextGenerator
de.charite.compbio.jannovar.annotation.de.charite.compbio.jannovar.annotation.Annotation
de.charite.compbio.jannovar.annotation.de.charite.compbio.jannovar.annotation.AnnotationException
de.charite.compbio.jannovar.annotation.de.charite.compbio.jannovar.annotation.AnnotationLocation
de.charite.compbio.jannovar.annotation.de.charite.compbio.jannovar.annotation.AnnotationLocationBuilder
de.charite.compbio.jannovar.annotation.de.charite.compbio.jannovar.annotation.AnnotationMessage
de.charite.compbio.jannovar.annotation.de.charite.compbio.jannovar.annotation.BestAnnotationListTextGenerator
de.charite.compbio.jannovar.annotation.de.charite.compbio.jannovar.annotation.InvalidGenomeVariant
de.charite.compbio.jannovar.annotation.de.charite.compbio.jannovar.annotation.OldVariantType
de.charite.compbio.jannovar.annotation.de.charite.compbio.jannovar.annotation.PutativeImpact
de.charite.compbio.jannovar.annotation.de.charite.compbio.jannovar.annotation.SVAnnotation
de.charite.compbio.jannovar.annotation.de.charite.compbio.jannovar.annotation.SVAnnotations
de.charite.compbio.jannovar.annotation.de.charite.compbio.jannovar.annotation.SVAnnotator
de.charite.compbio.jannovar.annotation.de.charite.compbio.jannovar.annotation.VCFAnnotationData
de.charite.compbio.jannovar.annotation.de.charite.compbio.jannovar.annotation.VCFSVAnnotationData
de.charite.compbio.jannovar.annotation.de.charite.compbio.jannovar.annotation.VariantAnnotations
de.charite.compbio.jannovar.annotation.de.charite.compbio.jannovar.annotation.VariantAnnotationsContentDecorator
de.charite.compbio.jannovar.annotation.de.charite.compbio.jannovar.annotation.VariantAnnotationsTextGenerator
de.charite.compbio.jannovar.annotation.de.charite.compbio.jannovar.annotation.VariantAnnotator
de.charite.compbio.jannovar.annotation.de.charite.compbio.jannovar.annotation.VariantEffect
de.charite.compbio.jannovar.annotation.de.charite.compbio.jannovar.annotation.VariantEffectPrinter
de.charite.compbio.jannovar.annotation.builders
de.charite.compbio.jannovar.annotation.builders.de.charite.compbio.jannovar.annotation.builders.AnnotationBuilder
de.charite.compbio.jannovar.annotation.builders.de.charite.compbio.jannovar.annotation.builders.AnnotationBuilderDispatcher
de.charite.compbio.jannovar.annotation.builders.de.charite.compbio.jannovar.annotation.builders.AnnotationBuilderOptions
de.charite.compbio.jannovar.annotation.builders.de.charite.compbio.jannovar.annotation.builders.BlockSubstitutionAnnotationBuilder
de.charite.compbio.jannovar.annotation.builders.de.charite.compbio.jannovar.annotation.builders.DeletionAnnotationBuilder
de.charite.compbio.jannovar.annotation.builders.de.charite.compbio.jannovar.annotation.builders.GenomicNucleotideChangeBuilder
de.charite.compbio.jannovar.annotation.builders.de.charite.compbio.jannovar.annotation.builders.InsertionAnnotationBuilder
de.charite.compbio.jannovar.annotation.builders.de.charite.compbio.jannovar.annotation.builders.SNVAnnotationBuilder
de.charite.compbio.jannovar.annotation.builders.de.charite.compbio.jannovar.annotation.builders.SVAnnotationBuilder
de.charite.compbio.jannovar.annotation.builders.de.charite.compbio.jannovar.annotation.builders.SVAnnotationBuilderDispatcher
de.charite.compbio.jannovar.annotation.builders.de.charite.compbio.jannovar.annotation.builders.SVBreakendAnnotationBuilder
de.charite.compbio.jannovar.annotation.builders.de.charite.compbio.jannovar.annotation.builders.SVCopyNumberVariantAnnotationBuilder
de.charite.compbio.jannovar.annotation.builders.de.charite.compbio.jannovar.annotation.builders.SVDeletionAnnotationBuilder
de.charite.compbio.jannovar.annotation.builders.de.charite.compbio.jannovar.annotation.builders.SVDuplicationAnnotationBuilder
de.charite.compbio.jannovar.annotation.builders.de.charite.compbio.jannovar.annotation.builders.SVInsertionAnnotationBuilder
de.charite.compbio.jannovar.annotation.builders.de.charite.compbio.jannovar.annotation.builders.SVInversionAnnotationBuilder
de.charite.compbio.jannovar.annotation.builders.de.charite.compbio.jannovar.annotation.builders.SVMobileElementDeletionAnnotationBuilder
de.charite.compbio.jannovar.annotation.builders.de.charite.compbio.jannovar.annotation.builders.SVMobileElementInsertionAnnotationBuilder
de.charite.compbio.jannovar.annotation.builders.de.charite.compbio.jannovar.annotation.builders.SVTandemDuplicationAnnotationBuilder
de.charite.compbio.jannovar.annotation.builders.de.charite.compbio.jannovar.annotation.builders.StructuralVariantAnnotationBuilder
de.charite.compbio.jannovar.data
de.charite.compbio.jannovar.data.de.charite.compbio.jannovar.data.Chromosome
de.charite.compbio.jannovar.data.de.charite.compbio.jannovar.data.JannovarData
de.charite.compbio.jannovar.data.de.charite.compbio.jannovar.data.JannovarDataSerializer
de.charite.compbio.jannovar.data.de.charite.compbio.jannovar.data.ReferenceDictionary
de.charite.compbio.jannovar.data.de.charite.compbio.jannovar.data.ReferenceDictionaryBuilder
de.charite.compbio.jannovar.data.de.charite.compbio.jannovar.data.SerializationException
de.charite.compbio.jannovar.data.impl
de.charite.compbio.jannovar.data.impl.de.charite.compbio.jannovar.data.impl.VersionComparator
de.charite.compbio.jannovar.data.impl.de.charite.compbio.jannovar.data.impl.VersionTokenizer
de.charite.compbio.jannovar.datasource
de.charite.compbio.jannovar.datasource.de.charite.compbio.jannovar.datasource.DataSource
de.charite.compbio.jannovar.datasource.de.charite.compbio.jannovar.datasource.DataSourceFactory
de.charite.compbio.jannovar.datasource.de.charite.compbio.jannovar.datasource.DatasourceOptions
de.charite.compbio.jannovar.datasource.de.charite.compbio.jannovar.datasource.EnsemblDataSource
de.charite.compbio.jannovar.datasource.de.charite.compbio.jannovar.datasource.EnsemblJannovarDataFactory
de.charite.compbio.jannovar.datasource.de.charite.compbio.jannovar.datasource.FileDownloadException
de.charite.compbio.jannovar.datasource.de.charite.compbio.jannovar.datasource.FileDownloader
de.charite.compbio.jannovar.datasource.de.charite.compbio.jannovar.datasource.FlatBEDDataSource
de.charite.compbio.jannovar.datasource.de.charite.compbio.jannovar.datasource.FlatBEDJannovarDataFactory
de.charite.compbio.jannovar.datasource.de.charite.compbio.jannovar.datasource.InvalidDataSourceException
de.charite.compbio.jannovar.datasource.de.charite.compbio.jannovar.datasource.JannovarDataFactory
de.charite.compbio.jannovar.datasource.de.charite.compbio.jannovar.datasource.RefSeqDataSource
de.charite.compbio.jannovar.datasource.de.charite.compbio.jannovar.datasource.RefSeqJannovarDataFactory
de.charite.compbio.jannovar.datasource.de.charite.compbio.jannovar.datasource.TranscriptModelBuilderHGNCExtender
de.charite.compbio.jannovar.datasource.de.charite.compbio.jannovar.datasource.UCSCDataSource
de.charite.compbio.jannovar.datasource.de.charite.compbio.jannovar.datasource.UCSCJannovarDataFactory
de.charite.compbio.jannovar.hgnc
de.charite.compbio.jannovar.hgnc.de.charite.compbio.jannovar.hgnc.AltGeneIDType
de.charite.compbio.jannovar.hgnc.de.charite.compbio.jannovar.hgnc.HGNCParser
de.charite.compbio.jannovar.hgnc.de.charite.compbio.jannovar.hgnc.HGNCRecord
de.charite.compbio.jannovar.impl.intervals
de.charite.compbio.jannovar.impl.intervals.de.charite.compbio.jannovar.impl.intervals.Interval
de.charite.compbio.jannovar.impl.intervals.de.charite.compbio.jannovar.impl.intervals.IntervalArray
de.charite.compbio.jannovar.impl.intervals.de.charite.compbio.jannovar.impl.intervals.IntervalEndExtractor
de.charite.compbio.jannovar.impl.intervals.de.charite.compbio.jannovar.impl.intervals.MutableInterval
de.charite.compbio.jannovar.impl.parse
de.charite.compbio.jannovar.impl.parse.de.charite.compbio.jannovar.impl.parse.FASTAParser
de.charite.compbio.jannovar.impl.parse.de.charite.compbio.jannovar.impl.parse.FASTARecord
de.charite.compbio.jannovar.impl.parse.de.charite.compbio.jannovar.impl.parse.InvalidAttributeException
de.charite.compbio.jannovar.impl.parse.de.charite.compbio.jannovar.impl.parse.ReferenceDictParser
de.charite.compbio.jannovar.impl.parse.de.charite.compbio.jannovar.impl.parse.TranscriptParseException
de.charite.compbio.jannovar.impl.parse.de.charite.compbio.jannovar.impl.parse.TranscriptParser
de.charite.compbio.jannovar.impl.parse.de.charite.compbio.jannovar.impl.parse.TranscriptSupportLevelsSetterFromLengths
de.charite.compbio.jannovar.impl.parse.ensembl
de.charite.compbio.jannovar.impl.parse.ensembl.de.charite.compbio.jannovar.impl.parse.ensembl.EnsemblParser
de.charite.compbio.jannovar.impl.parse.flatbed
de.charite.compbio.jannovar.impl.parse.flatbed.de.charite.compbio.jannovar.impl.parse.flatbed.FlatBEDFastaParser
de.charite.compbio.jannovar.impl.parse.flatbed.de.charite.compbio.jannovar.impl.parse.flatbed.FlatBEDParser
de.charite.compbio.jannovar.impl.parse.gtfgff
de.charite.compbio.jannovar.impl.parse.gtfgff.de.charite.compbio.jannovar.impl.parse.gtfgff.FeatureRecord
de.charite.compbio.jannovar.impl.parse.gtfgff.de.charite.compbio.jannovar.impl.parse.gtfgff.FeatureRecordParser
de.charite.compbio.jannovar.impl.parse.gtfgff.de.charite.compbio.jannovar.impl.parse.gtfgff.GFFParser
de.charite.compbio.jannovar.impl.parse.gtfgff.de.charite.compbio.jannovar.impl.parse.gtfgff.GFFRecordParser
de.charite.compbio.jannovar.impl.parse.gtfgff.de.charite.compbio.jannovar.impl.parse.gtfgff.GTFRecordParser
de.charite.compbio.jannovar.impl.parse.refseq
de.charite.compbio.jannovar.impl.parse.refseq.de.charite.compbio.jannovar.impl.parse.refseq.RefSeqFastaRecordIdFormat
de.charite.compbio.jannovar.impl.parse.refseq.de.charite.compbio.jannovar.impl.parse.refseq.RefSeqParser
de.charite.compbio.jannovar.impl.parse.ucsc
de.charite.compbio.jannovar.impl.parse.ucsc.de.charite.compbio.jannovar.impl.parse.ucsc.UCSCParser
de.charite.compbio.jannovar.impl.util
de.charite.compbio.jannovar.impl.util.de.charite.compbio.jannovar.impl.util.DNAUtils
de.charite.compbio.jannovar.impl.util.de.charite.compbio.jannovar.impl.util.PathUtil
de.charite.compbio.jannovar.impl.util.de.charite.compbio.jannovar.impl.util.ProgressBar
de.charite.compbio.jannovar.impl.util.de.charite.compbio.jannovar.impl.util.StringUtil
de.charite.compbio.jannovar.impl.util.de.charite.compbio.jannovar.impl.util.Translator
de.charite.compbio.jannovar.mendel
de.charite.compbio.jannovar.mendel.de.charite.compbio.jannovar.mendel.ChromosomeType
de.charite.compbio.jannovar.mendel.de.charite.compbio.jannovar.mendel.Genotype
de.charite.compbio.jannovar.mendel.de.charite.compbio.jannovar.mendel.GenotypeBuilder
de.charite.compbio.jannovar.mendel.de.charite.compbio.jannovar.mendel.GenotypeCalls
de.charite.compbio.jannovar.mendel.de.charite.compbio.jannovar.mendel.GenotypeCallsBuilder
de.charite.compbio.jannovar.mendel.de.charite.compbio.jannovar.mendel.IncompatiblePedigreeException
de.charite.compbio.jannovar.mendel.de.charite.compbio.jannovar.mendel.MendelianInheritanceChecker
de.charite.compbio.jannovar.mendel.de.charite.compbio.jannovar.mendel.ModeOfInheritance
de.charite.compbio.jannovar.mendel.de.charite.compbio.jannovar.mendel.SubModeOfInheritance
de.charite.compbio.jannovar.mendel.impl
de.charite.compbio.jannovar.mendel.impl.de.charite.compbio.jannovar.mendel.impl.AbstractMendelianChecker
de.charite.compbio.jannovar.mendel.impl.de.charite.compbio.jannovar.mendel.impl.Candidate
de.charite.compbio.jannovar.mendel.impl.de.charite.compbio.jannovar.mendel.impl.InheritanceCheckerMT
de.charite.compbio.jannovar.mendel.impl.de.charite.compbio.jannovar.mendel.impl.MendelianCheckerAD
de.charite.compbio.jannovar.mendel.impl.de.charite.compbio.jannovar.mendel.impl.MendelianCheckerAR
de.charite.compbio.jannovar.mendel.impl.de.charite.compbio.jannovar.mendel.impl.MendelianCheckerARCompoundHet
de.charite.compbio.jannovar.mendel.impl.de.charite.compbio.jannovar.mendel.impl.MendelianCheckerARHom
de.charite.compbio.jannovar.mendel.impl.de.charite.compbio.jannovar.mendel.impl.MendelianCheckerXD
de.charite.compbio.jannovar.mendel.impl.de.charite.compbio.jannovar.mendel.impl.MendelianCheckerXR
de.charite.compbio.jannovar.mendel.impl.de.charite.compbio.jannovar.mendel.impl.MendelianCheckerXRCompoundHet
de.charite.compbio.jannovar.mendel.impl.de.charite.compbio.jannovar.mendel.impl.MendelianCheckerXRHom
de.charite.compbio.jannovar.pedigree
de.charite.compbio.jannovar.pedigree.de.charite.compbio.jannovar.pedigree.Disease
de.charite.compbio.jannovar.pedigree.de.charite.compbio.jannovar.pedigree.Genotype
de.charite.compbio.jannovar.pedigree.de.charite.compbio.jannovar.pedigree.GenotypeList
de.charite.compbio.jannovar.pedigree.de.charite.compbio.jannovar.pedigree.GenotypeListBuilder
de.charite.compbio.jannovar.pedigree.de.charite.compbio.jannovar.pedigree.PedFileContents
de.charite.compbio.jannovar.pedigree.de.charite.compbio.jannovar.pedigree.PedFileReader
de.charite.compbio.jannovar.pedigree.de.charite.compbio.jannovar.pedigree.PedFileWriter
de.charite.compbio.jannovar.pedigree.de.charite.compbio.jannovar.pedigree.PedParseException
de.charite.compbio.jannovar.pedigree.de.charite.compbio.jannovar.pedigree.PedPerson
de.charite.compbio.jannovar.pedigree.de.charite.compbio.jannovar.pedigree.Pedigree
de.charite.compbio.jannovar.pedigree.de.charite.compbio.jannovar.pedigree.PedigreeExtractor
de.charite.compbio.jannovar.pedigree.de.charite.compbio.jannovar.pedigree.PedigreeQueryDecorator
de.charite.compbio.jannovar.pedigree.de.charite.compbio.jannovar.pedigree.Person
de.charite.compbio.jannovar.pedigree.de.charite.compbio.jannovar.pedigree.Sex
de.charite.compbio.jannovar.reference
de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.AminoAcidChange
de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.AminoAcidChangeNormalizer
de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.CDSInterval
de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.CDSPosition
de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.DuplicationChecker
de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.GenomeInterval
de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.GenomePosition
de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.GenomeVariant
de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.GenomeVariantNormalizer
de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.GenomeVariantType
de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.HG19RefDictBuilder
de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.InvalidCodonException
de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.InvalidCoordinateException
de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.NucleotidePointLocationBuilder
de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.PositionType
de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.ProjectionException
de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.SVBreakend
de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.SVCopyNumberVariant
de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.SVDeletion
de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.SVDescription
de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.SVDuplication
de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.SVGenomeVariant
de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.SVInsertion
de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.SVInversion
de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.SVMobileElementDeletion
de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.SVMobileElementInsertion
de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.SVTandemDuplication
de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.SVUnknown
de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.Strand
de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.TranscriptInterval
de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.TranscriptIntervalEndExtractor
de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.TranscriptModel
de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.TranscriptModelBuilder
de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.TranscriptPosition
de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.TranscriptProjectionDecorator
de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.TranscriptSequenceChangeHelper
de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.TranscriptSequenceDecorator
de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.TranscriptSequenceOntologyDecorator
de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.TranscriptSupportLevels
de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.VariantDataCorrector
de.charite.compbio.jannovar.reference.de.charite.compbio.jannovar.reference.VariantDescription
.project.properties




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