marytts.cart.io.WagonCARTReader Maven / Gradle / Ivy
/**
* Copyright 2006 DFKI GmbH.
* All Rights Reserved. Use is subject to license terms.
*
* This file is part of MARY TTS.
*
* MARY TTS is free software: you can redistribute it and/or modify
* it under the terms of the GNU Lesser General Public License as published by
* the Free Software Foundation, version 3 of the License.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with this program. If not, see
* ClasificationTree → IntArrayLeafNode
*
* ExtendedClassificationTree → IntAndFloatArrayLeafNode
*
* RegressionTree → FloatLeafNode
*
* TopLevelTree → FeatureVectorLeafNode
*
* StringCART → StringAndFloatLeafNode
*/
public WagonCARTReader(LeafNode.LeafType leafType) {
this.leafType = leafType;
}
/**
* For a line representing a leaf in Wagon format, create a leaf. This method decides which implementation of LeafNode is
* used, i.e. which data format is appropriate. Lines are of the form ((index1 float1)...(indexN floatN)) 0))
*
* @param line
* a line from a wagon cart file, representing a leaf
* @return a leaf node representing the line.
*/
protected LeafNode createLeafNode(String line) {
if (leafType == LeafNode.LeafType.IntArrayLeafNode)
return (createIntArrayLeafNode(line));
else if (leafType == LeafNode.LeafType.IntAndFloatArrayLeafNode)
return (createIntAndFloatArrayLeafNode(line));
else if (leafType == LeafNode.LeafType.FloatLeafNode)
return (createFloatLeafNode(line));
else if (leafType == LeafNode.LeafType.FeatureVectorLeafNode)
return (createFeatureVectorLeafNode(line));
else if (leafType == LeafNode.LeafType.StringAndFloatLeafNode)
return (createStringAndFloatLeafNode(line));
else
return null;
}
// in case of using the reader more than once for different root nodes.
private void cleadReader() {
rootNode = null;
lastNode = null;
featDef = null;
openBrackets = 0;
}
/**
*
* This loads a cart from a wagon tree in textual format, from a reader.
*
* @param reader
* the Reader providing the wagon tree
* @param featDefinition
* featDefinition
* @throws IOException
* IOException
* @return rootNode
*/
public Node load(BufferedReader reader, FeatureDefinition featDefinition) throws IOException {
cleadReader();
featDef = featDefinition;
openBrackets = 0;
String line = reader.readLine();
if (line.equals("")) {// first line is empty, read again
line = reader.readLine();
}
// each line corresponds to a node
// for each line
while (line != null) {
if (!line.startsWith(";;") && !line.equals("")) {
// parse the line and add the node
parseAndAdd(line);
}
line = reader.readLine();
}
// make sure we closed as many brackets as we opened
if (openBrackets != 0) {
throw new IOException("Error loading CART: bracket mismatch");
}
// Now count all data once, so that getNumberOfData()
// will return the correct figure.
if (rootNode instanceof DecisionNode)
((DecisionNode) rootNode).countData();
return rootNode;
}
/**
* Load the cart from the given file
*
* @param fileName
* the file to load the cart from
* @param featDefinition
* the feature definition
* @param dummy
* unused, just here for compatibility with the FeatureFileIndexer.
* @throws IOException
* if a problem occurs while loading
* @throws MaryConfigurationException
* MaryConfigurationException
* @return rootNode
*/
// TODO: CHECK! do we need that String[] dummy???
public Node load(String fileName, FeatureDefinition featDefinition, String[] dummy) throws IOException,
MaryConfigurationException {
cleadReader();
// System.out.println("Loading file");
// open the CART-File and read the header
DataInput raf = new DataInputStream(new BufferedInputStream(new FileInputStream(fileName)));
MaryHeader maryHeader = new MaryHeader(raf);
if (!maryHeader.hasCurrentVersion()) {
throw new IOException("Wrong version of database file");
}
if (maryHeader.getType() != MaryHeader.CARTS) {
throw new IOException("No CARTs file");
}
// System.out.println("Reading CART");
// discard number of CARTs and CART name
// TODO: Change format of CART-File
int numNodes = raf.readInt();
raf.readUTF();
// load the CART
featDef = featDefinition;
// get the backtrace information
openBrackets = 0;
// Not elegant, but robust
try {
while (true) {
// parse the line and add the node
int length = raf.readInt();
char[] cartChars = new char[length];
for (int i = 0; i < length; i++) {
cartChars[i] = raf.readChar();
}
String cart = new String(cartChars);
// System.out.println(cart);
parseAndAdd(cart);
}
} catch (EOFException eof) {
}
// make sure we closed as many brackets as we opened
if (openBrackets != 0) {
throw new IOException("Error loading CART: bracket mismatch: " + openBrackets);
}
// Now count all data once, so that getNumberOfData()
// will return the correct figure.
if (rootNode instanceof DecisionNode)
((DecisionNode) rootNode).countData();
// System.out.println("Done");
return rootNode;
}
/**
* Creates a node from the given input line and add it to the CART.
*
* @param line
* a line of input to parse
* @throws IOException
* if the line has an unexpected format
*/
private void parseAndAdd(String line) throws IOException {
// remove whitespace
line = line.trim();
// at beginning of String there should be at least two opening brackets
if (!(line.startsWith("(("))) {
throw new IOException("Invalid input line for CART: " + line);
}
if (Character.isLetter(line.charAt(2)) && !line.substring(2, 6).equals("nan ")) { // we have a node
openBrackets++; // do not count first bracket
// get the properties of the node
StringTokenizer tokenizer = new StringTokenizer(line, " ");
String feature = tokenizer.nextToken().substring(2);
String type = tokenizer.nextToken();
String value = tokenizer.nextToken();
value = value.substring(0, value.length() - 1);
// some values are enclosed in double quotes:
if (value.startsWith("\"") && value.endsWith("\"") && value.length() > 2)
value = value.substring(1, value.length() - 1);
// a literal double quote is escaped by backslash, so unescape it:
if (value.contains("\\\"")) {
value = value.replaceAll("\\\\\"", "\"");
}
// build new node depending on type
Node nextNode;
try {
if (type.equals("is")) {
if (featDef.isByteFeature(feature)) {
nextNode = new DecisionNode.BinaryByteDecisionNode(feature, value, featDef);
} else {
nextNode = new DecisionNode.BinaryShortDecisionNode(feature, value, featDef);
}
} else {
if (type.equals("<")) {
nextNode = new DecisionNode.BinaryFloatDecisionNode(feature, Float.parseFloat(value), featDef);
} else {
if (type.equals("isShortOf")) {
nextNode = new DecisionNode.ShortDecisionNode(feature, Integer.parseInt(value), featDef);
} else {
if (type.equals("isByteOf")) {
nextNode = new DecisionNode.ByteDecisionNode(feature, Integer.parseInt(value), featDef);
} else {
throw new IOException("Unknown node type : " + type);
}
}
}
}
} catch (Exception exc) {
throw new RuntimeException("Cannot create decision node for cart line: '" + line + "'", exc);
}
if (lastNode != null) {
// this node is the daughter of the last node
((DecisionNode) lastNode).addDaughter(nextNode);
} else {
// this is the rootNode
rootNode = nextNode;
nextNode.setIsRoot(true);
}
// go one step down
lastNode = nextNode;
} else { // we have a leaf
Node nextNode = createLeafNode(line);
// set the relations of this node to the others
if (lastNode == null) { // this node is the root
rootNode = nextNode;
nextNode.setIsRoot(true);
} else { // this node is a daughter of lastNode
((DecisionNode) lastNode).addDaughter(nextNode);
}
// look at the bracketing at the end of the line:
// get the last token out of the tokenizer
StringTokenizer tokenizer = new StringTokenizer(line, " ");
for (int i = 0, numTokens = tokenizer.countTokens(); i < numTokens - 1; i++) {
tokenizer.nextToken();
}
String lastToken = tokenizer.nextToken();
// lastToken should look like "0))"
// more than two brackets mean that this is
// the last daughter of one or more nodes
int length = lastToken.length();
// start looking at the characters after "0))"
int index = lastToken.indexOf(')') + 2;
while (index < length) { // while we have more characters
char nextChar = lastToken.charAt(index);
if (nextChar == ')') {
// if the next character is a closing bracket
openBrackets--;
// this is the last daughter of lastNode,
// try going one step up
if (lastNode.isRoot()) {
if (index + 1 != length) {
// lastNode should not be the root,
// unless we are at the last bracket
throw new IOException("Too many closing brackets in line " + line);
}
} else { // you can go one step up
nextNode = lastNode;
lastNode = lastNode.getMother();
}
} else {
// nextChar is not a closing bracket;
// something went wrong here
throw new IOException("Expected closing bracket in line " + line + ", but found " + nextChar);
}
index++;
}
// for debugging
if (nextNode != null) {
int nodeIndex = nextNode.getNodeIndex();
}
}
}
protected LeafNode createIntArrayLeafNode(String line) {
StringTokenizer tok = new StringTokenizer(line, " ");
// read the indices from the tokenized String
int numTokens = tok.countTokens();
int index = 0;
// The data to be saved in the leaf node:
int[] indices;
if (numTokens == 2) { // we do not have any indices
// discard useless token
tok.nextToken();
indices = new int[0];
} else {
indices = new int[(numTokens - 1) / 2];
while (index * 2 < numTokens - 1) { // while we are not at the
// last token
String nextToken = tok.nextToken();
if (index == 0) {
// we are at first token, discard all open brackets
nextToken = nextToken.substring(4);
} else {
// we are not at first token, only one open bracket
nextToken = nextToken.substring(1);
}
// store the index of the unit
indices[index] = Integer.parseInt(nextToken);
// discard next token
tok.nextToken();
// increase index
index++;
}
}
return new LeafNode.IntArrayLeafNode(indices);
}
protected LeafNode createIntAndFloatArrayLeafNode(String line) {
StringTokenizer tok = new StringTokenizer(line, " ");
// read the indices from the tokenized String
int numTokens = tok.countTokens();
int index = 0;
// The data to be saved in the leaf node:
int[] indices;
// The floats to be saved in the leaf node:
float[] probs;
// System.out.println("Line: "+line+", numTokens: "+numTokens);
if (numTokens == 2) { // we do not have any indices
// discard useless token
tok.nextToken();
indices = new int[0];
probs = new float[0];
} else {
indices = new int[(numTokens - 1) / 2];
// same length
probs = new float[indices.length];
while (index * 2 < numTokens - 1) {
String token = tok.nextToken();
if (index == 0) {
token = token.substring(4);
} else {
token = token.substring(1);
}
// System.out.println("int-token: "+token);
indices[index] = Integer.parseInt(token);
token = tok.nextToken();
int lastIndex = token.length() - 1;
if ((index * 2) == (numTokens - 3)) {
token = token.substring(0, lastIndex - 1);
if (token.equals("inf")) {
probs[index] = 10000;
index++;
continue;
}
if (token.equals("nan")) {
probs[index] = -1;
index++;
continue;
}
} else {
token = token.substring(0, lastIndex);
if (token.equals("inf")) {
probs[index] = 1000000;
index++;
continue;
}
if (token.equals("nan")) {
probs[index] = -1;
index++;
continue;
}
}
// System.out.println("float-token: "+token);
probs[index] = Float.parseFloat(token);
index++;
} // end while
} // end if
return new LeafNode.IntAndFloatArrayLeafNode(indices, probs);
}
protected LeafNode createFloatLeafNode(String line) {
StringTokenizer tok = new StringTokenizer(line, " ");
// read the indices from the tokenized String
int numTokens = tok.countTokens();
if (numTokens != 2) { // we need exactly one value pair
throw new IllegalArgumentException("Expected two tokens in line, got " + numTokens + ": '" + line + "'");
}
// The data to be saved in the leaf node:
float[] data = new float[2]; // stddev and mean;
String nextToken = tok.nextToken();
nextToken = nextToken.substring(2);
try {
data[0] = Float.parseFloat(nextToken);
} catch (NumberFormatException nfe) {
data[0] = 0; // cannot make sense of the standard deviation
}
nextToken = tok.nextToken();
nextToken = nextToken.substring(0, nextToken.indexOf(")"));
try {
data[1] = Float.parseFloat(nextToken);
} catch (NumberFormatException nfe) {
data[1] = 0;
}
return new LeafNode.FloatLeafNode(data);
}
protected LeafNode createFeatureVectorLeafNode(String line) {
StringTokenizer tok = new StringTokenizer(line, " ");
// read the indices from the tokenized String
int numTokens = tok.countTokens();
int index = 0;
// The data to be saved in the leaf node:
if (numTokens != 2) {
// leaf is not empty -> error
throw new Error("Leaf in line " + line + " is not empty");
}
// discard useless token
tok.nextToken();
return new LeafNode.FeatureVectorLeafNode();
}
/**
* Fill the FeatureVector leafs of a tree with the given feature vectors. This function is only used in TopLeavelTree.
*
* @param root
* node of the tree.
* @param featureVectors
* the feature vectors.
*/
public void fillLeafs(Node root, FeatureVector[] featureVectors) {
if (leafType == LeafNode.LeafType.FeatureVectorLeafNode) {
rootNode = root;
Node currentNode = rootNode;
Node prevNode = null;
// loop trough the feature vectors
for (int i = 0; i < featureVectors.length; i++) {
currentNode = rootNode;
prevNode = null;
FeatureVector featureVector = featureVectors[i];
// logger.debug("Starting cart at "+nodeIndex);
while (!(currentNode instanceof LeafNode)) {
// while we have not reached the bottom,
// get the next node based on the features of the target
prevNode = currentNode;
currentNode = ((DecisionNode) currentNode).getNextNode(featureVector);
// logger.debug(decision.toString() + " result '"+
// decision.findFeature(item) + "' => "+ nodeIndex);
}
// add the feature vector to the leaf node
((LeafNode.FeatureVectorLeafNode) currentNode).addFeatureVector(featureVector);
}
} else
throw new IllegalArgumentException("The leaves of this tree are not FeatureVectorLeafNode.");
}
protected LeafNode createStringAndFloatLeafNode(String line) {
// Note: this code is identical to createIntAndFloatArrayLeafNode(),
// except for the last line.
StringTokenizer tok = new StringTokenizer(line, " ");
// read the indices from the tokenized String
int numTokens = tok.countTokens();
int index = 0;
// The data to be saved in the leaf node:
int[] indices;
// The floats to be saved in the leaf node:
float[] probs;
// System.out.println("Line: "+line+", numTokens: "+numTokens);
if (numTokens == 2) { // we do not have any indices
// discard useless token
tok.nextToken();
indices = new int[0];
probs = new float[0];
} else {
indices = new int[(numTokens - 1) / 2];
// same length
probs = new float[indices.length];
while (index * 2 < numTokens - 1) {
String token = tok.nextToken();
if (index == 0) {
token = token.substring(4);
} else {
token = token.substring(1);
}
// System.out.println("int-token: "+token);
indices[index] = Integer.parseInt(token);
token = tok.nextToken();
int lastIndex = token.length() - 1;
if ((index * 2) == (numTokens - 3)) {
token = token.substring(0, lastIndex - 1);
if (token.equals("inf")) {
probs[index] = 10000;
index++;
continue;
}
if (token.equals("nan")) {
probs[index] = -1;
index++;
continue;
}
} else {
token = token.substring(0, lastIndex);
if (token.equals("inf")) {
probs[index] = 1000000;
index++;
continue;
}
if (token.equals("nan")) {
probs[index] = -1;
index++;
continue;
}
}
// System.out.println("float-token: "+token);
probs[index] = Float.parseFloat(token);
index++;
} // end while
} // end if
return new LeafNode.StringAndFloatLeafNode(indices, probs);
}
}