Many resources are needed to download a project. Please understand that we have to compensate our server costs. Thank you in advance. Project price only 1 $
You can buy this project and download/modify it how often you want.
/*
* Copyright 2013 SFB 632.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package annis.visualizers.component.gridtree;
import static annis.CommonHelper.getSpannedText;
import static annis.model.AnnisConstants.ANNIS_NS;
import static annis.model.AnnisConstants.FEAT_MATCHEDNODE;
import static annis.model.AnnisConstants.FEAT_RELANNIS_NODE;
import java.util.ArrayList;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Map.Entry;
import java.util.Set;
import java.util.TreeMap;
import org.corpus_tools.salt.common.SDocumentGraph;
import org.corpus_tools.salt.common.SSpan;
import org.corpus_tools.salt.common.SToken;
import org.corpus_tools.salt.core.GraphTraverseHandler;
import org.corpus_tools.salt.core.SAnnotation;
import org.corpus_tools.salt.core.SFeature;
import org.corpus_tools.salt.core.SGraph.GRAPH_TRAVERSE_TYPE;
import org.corpus_tools.salt.core.SNode;
import org.corpus_tools.salt.core.SRelation;
import com.vaadin.ui.Panel;
import annis.gui.widgets.grid.AnnotationGrid;
import annis.gui.widgets.grid.GridEvent;
import annis.gui.widgets.grid.Row;
import annis.libgui.Helper;
import annis.libgui.VisualizationToggle;
import annis.libgui.visualizers.AbstractVisualizer;
import annis.libgui.visualizers.VisualizerInput;
import annis.model.RelannisNodeFeature;
import net.xeoh.plugins.base.annotations.PluginImplementation;
/**
* A grid visualizing hierarchical tree annotations as ordered grid layers.
*
* Note that all layers represent the same annotation name at different
* hierarchical depths, marked level:0,1,2,... etc. on the left
*
* Known Bug: the visualizer does not handle crossing edges. Equal annotation
* names which cover the same range or a subset of nodes and have the same
* hierarchical depths are not rendered correctly by grid_tree.
* https://github.com/korpling/ANNIS/issues/14
*
*
Mappings:
*
*
Specify the name of the annotation to be visualized in the grid with
* node_key:name. Note that all grid levels visualize the same annotation
* name at different hierarchical depths.
*
Specify the name of the base row with the tok_key:name. This is
* useful, if you want to use a specific annotation layer for instead of the
* always existing tok layer. E.g. the falko corpora often contain the ZH
* (Zielhypothesen)-layers.
*
* @author Benjamin Weißenfels
*
*/
@PluginImplementation
public class GridTreeVisualizer extends AbstractVisualizer {
@Override
public String getShortName() {
return "grid_tree";
}
@Override
public Panel createComponent(VisualizerInput visInput,
VisualizationToggle visToggle) {
return new GridTreePanel(visInput, visToggle);
}
private static class GridTreePanel extends Panel {
private VisualizerInput input;
private SDocumentGraph graph;
public GridTreePanel(VisualizerInput visInput, VisualizationToggle visToggle) {
// nothing to render if no input is there
if (visInput == null) {
return;
}
// save the input for helper methods
this.input = visInput;
// save the graph for convenience access
graph = input.getSResult().getDocumentGraph();
// init an empty grid
AnnotationGrid grid = new AnnotationGrid(input.getId(), getTokKey());
// set config for escaping html tags
String escapeHTML = visInput.getMappings().getProperty("escape_html", "true");
grid.setEscapeHTML(Boolean.parseBoolean(escapeHTML));
// get all roots for having a start point for the traversal
List roots = graph.getRoots();
/**
* This abstract representation is used by the AnnotationGrid for
* creating the html table at the end. The should be sorted by the
* row height, which is represented as the a string value of the row
* integer. The would only work up to 10 rows.
*/
final Map> table = new TreeMap>();
/**
* Get a list of sorted token for retrieving the token index of the
* most left token and fetch the token index of the first token, so
* we have can calculate the offset of each token index. Also the
* token index of the last token is fetched.
*/
List sortedToken = graph.getSortedTokenByText();
int startIdx = -1;
int endIdx = -1;
if (sortedToken != null && sortedToken.get(0) != null) {
RelannisNodeFeature f = (RelannisNodeFeature) sortedToken.get(0).
getFeature(ANNIS_NS, FEAT_RELANNIS_NODE).getValue();
startIdx = (int) f.getTokenIndex();
f = (RelannisNodeFeature) sortedToken.get(sortedToken.size() - 1).
getFeature(ANNIS_NS, FEAT_RELANNIS_NODE).getValue();
endIdx = (int) f.getTokenIndex();
}
// init the traversal
GraphTraverseHandler traverse = new Traverse(startIdx, endIdx,
getNodeKey(), input.getNamespace(), table);
// TODO build the grid tree above the token/annotation level
graph.traverse(roots, GRAPH_TRAVERSE_TYPE.TOP_DOWN_DEPTH_FIRST,
"gridtree", traverse);
// add the last row, TODO extend to arbitrary nodes not only token level
ArrayList baseRows = createBaseRows();
/**
* Add the last row. For placing it to the bottom of the table, we
* need to get the string representation of the last index.
*/
table.put(getTokKey(), baseRows);
addCoveredIDs(getTokKey(), table);
// finally put the table into the rendering class
grid.setRowsByAnnotation(table);
grid.setTokenIndexOffset(startIdx);
// add the annotation grid to the gui
setContent(grid);
// add some css formatting
grid.addStyleName("partitur_table");
grid.addStyleName(Helper.CORPUS_FONT_FORCE);
}
/**
* Sets the covered ids for gridtree spans.
*
* @param baseRowIdx the index of the row from which the salt ids are
* extracted. Most of the time the index would be "tok".
* @param table abstract representation of the table which is rendered
* by {@link AnnotationGrid}
*/
private void addCoveredIDs(String baseRowIdx,
Map> table) {
if (!table.containsKey(baseRowIdx)) {
throw new IllegalArgumentException("table index does not exist");
}
// get the base row. There should be only one
Row baseRow = table.get(baseRowIdx).get(0);
// iterate over all rows, except the row with the base index
for (Entry> e : table.entrySet()) {
// skip the base row
if (e.getKey().equals(baseRowIdx)) {
continue;
}
// find all base events which have a token index range with the span event
Row row = table.get(e.getKey()).get(0);
for (GridEvent event : row.getEvents()) {
int leftIdx = event.getLeft();
int rightIdx = event.getRight();
for (GridEvent baseEvent : baseRow.getEvents()) {
if (leftIdx <= baseEvent.getLeft()
&& baseEvent.getRight() <= rightIdx) {
event.getCoveredIDs().add(baseEvent.getId());
}
}
}
}
}
private String getTokKey() {
return input.getMappings().getProperty("tok_key", "tok");
}
private String getNodeKey() {
return input.getMappings().getProperty("node_key", "cat");
}
private boolean hasAnno(SNode n) {
Set annos = n.getAnnotations();
if (annos != null) {
for (SAnnotation a : annos) {
if (getTokKey().equals(a.getName())) {
return true;
}
}
}
return false;
}
private ArrayList createBaseRows() {
ArrayList baseRows = new ArrayList();
Row baseRow = new Row();
baseRows.add(baseRow);
if (getTokKey().equals("tok")) {
for (SToken t : graph.getSortedTokenByText()) {
RelannisNodeFeature f = (RelannisNodeFeature) t.getFeature(
ANNIS_NS, FEAT_RELANNIS_NODE).getValue();
int idx = (int) f.getTokenIndex();
baseRow.
addEvent(new GridEvent(t.getId(), idx, idx, getSpannedText(t)));
}
} else {
List sSpans = graph.getSpans();
if (sSpans != null) {
for (SNode n : sSpans) {
if (hasAnno(n)) {
RelannisNodeFeature f = (RelannisNodeFeature) n.getFeature(
ANNIS_NS, FEAT_RELANNIS_NODE).getValue();
int leftIdx = (int) f.getLeftToken();
int rightIdx = (int) f.getRightToken();
baseRow.
addEvent(new GridEvent(n.getId(), leftIdx, rightIdx,
getAnnoText(n)));
}
}
}
}
return baseRows;
}
private String getAnnoText(SNode n) {
Set annos = n.getAnnotations();
if (annos != null) {
for (SAnnotation a : annos) {
if (getTokKey().equals(a.getName())) {
return a.getValue_STEXT();
}
}
}
return "";
}
}
private static class Traverse implements GraphTraverseHandler {
/**
* Tracks the depth of the traversal. Steps are counted, when the node
* containes the defined annotation key. This value is later used for
* the row index in the {@link AnnotationGrid}.
*/
int depth = 0;
// the token index of the last token
int endIdx;
// the token index of the most left token of the result set
int startIdx;
// defines the annotation key. Only nodes with that key are filtered.
String annotationKey;
Map> table;
// tracks all nodes which was visited.
Set visited = new HashSet();
/**
* Init a traverse handler for building a tree of topological fields.
*
* @param startIdx the most left token index
* @param endIdx the most right index
* @param nodeKey the annotation key. Only nodes which contain this key
* will be taken into account
* @param namespace the namespace which triggered this visualization
* @param table the abstract representation of the table
*/
private Traverse(int startIdx, int endIdx, String nodeKey, String namespace,
Map> table) {
this.startIdx = startIdx;
this.endIdx = endIdx;
this.annotationKey = nodeKey;
this.table = table;
}
@Override
public void nodeReached(GRAPH_TRAVERSE_TYPE g, String string,
SNode currNode, SRelation edge, SNode fromNode, long l) {
// retrieve the annotation by the node key
SAnnotation anno = getAnno(currNode);
if (anno != null) {
String rIdx = String.valueOf(depth);
if (!table.containsKey(rIdx)) {
ArrayList rows = new ArrayList();
rows.add(new Row());
table.put(rIdx, rows);
}
RelannisNodeFeature f = (RelannisNodeFeature) currNode.
getFeature(ANNIS_NS, FEAT_RELANNIS_NODE).getValue();
// cut off the most left and right indexes
int leftIdx = Math.max(((int) f.getLeftToken()), startIdx);
int rightIdx = Math.min(((int) f.getRightToken()), endIdx);
GridEvent e = new GridEvent(currNode.getId(), leftIdx, rightIdx, anno.
getValue_STEXT());
// add match id
SFeature featMatched = currNode.getFeature(ANNIS_NS, FEAT_MATCHEDNODE);
Long match = featMatched == null ? null : featMatched.
getValue_SNUMERIC();
e.setMatch(match);
// set tooltip
e.setTooltip(anno.getQName() + "=\"" + e.getValue() + "\"");
// always only one row for a gridtree
table.get(rIdx).get(0).addEvent(e);
// mark as visited
visited.add(currNode);
// increase the depth of the depth tree
depth++;
}
}
@Override
public void nodeLeft(GRAPH_TRAVERSE_TYPE g, String string,
SNode currNode, SRelation edge, SNode fromNode, long l) {
assert depth >= 0;
if (visited.contains(currNode)) {
visited.remove(currNode);
depth--;
}
}
@Override
public boolean checkConstraint(GRAPH_TRAVERSE_TYPE g, String string,
SRelation sr, SNode snode, long l) {
return true;
}
private SAnnotation getAnno(SNode n) {
Set annos = n.getAnnotations();
if (annos != null) {
for (SAnnotation a : annos) {
if (annotationKey.equals(a.getName())) {
return a;
}
}
}
return null;
}
}
}
