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Fast and Scalable Java Library for Writing ISA-Tab Files

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/**
 * Copyright (c) 2020 Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany.
 * All rights reserved. This program and the accompanying materials are made available under the terms of the MIT License (https://spdx.org/licenses/MIT.html)
 *
 * Contributors:
 *      Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany
 */
package de.ipk_gatersleben.bit.bi.isa4j.components;

import java.util.HashMap;
import java.util.LinkedHashMap;
import java.util.List;
import java.util.Map;
import java.util.Objects;

import de.ipk_gatersleben.bit.bi.isa4j.util.StringUtil;

public class Material extends Source {
	private String type;
	
	public Material(String type, String name) {
		super(name);
		this.setType(type);
	}
	
	public Material(String type, String name, List characteristics) {
		super(name, characteristics);
		this.setType(type);
	}

	Map getFields() {
		HashMap fields = new HashMap();
		
		fields.put(this.type, new String[]{this.name});
		fields.putAll(this.getFieldsForCharacteristics());

		return fields;
	}

	LinkedHashMap getHeaders() {
		LinkedHashMap headers = new LinkedHashMap();
		
		headers.put(this.type, new String[]{this.type});
		headers.putAll(this.getHeadersForCharacteristics());
		
		return headers;
	}
	
	/**
	 * @return the type
	 */
	public String getType() {
		return type;
	}
	
	
	/**
	 * @param type the type to set
	 */
	public void setType(String type) {
		this.type = StringUtil.sanitize(Objects.requireNonNull(type, "Type cannot be null"));
	}
	
	@Override
	public String toString() {
		return " '" + this.name + "'";
	}

}