de.julielab.geneexpbase.genemodel.GeneSpeciesOccurrence Maven / Gradle / Ivy

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package de.julielab.geneexpbase.genemodel;

/**  Descending order of reliability according to Hakenberg et al. (2008)
 *  (1) same compound noun: ‘murine Eif4g1’,
    (2) same phrase, including enumerations: ‘rat and murine Eif4g1’ or
    (3) same sentence.
    (4) previous sentence mentions a species,
    (5) title of abstracts mentions a species,
    (6) first sentence of abstract mentions a species,
    (7) a species occurs anywhere in the abstract or
    (8) a species was annotated as MeSH term.
    
    If no species are mentioned anywhere, a default one (9) might be set.
 */
public enum GeneSpeciesOccurrence	 {
	@Deprecated COMPOUND_PRECED, @Deprecated COMPOUND_SUCCED, COMPOUND, SENTENCE_PRECED, SENTENCE_SUCCED, /** The sentence before the current one. */@Deprecated PREVIOUS_SENTENCE, TITLE, FIRST, ANYWHERE, MESH, DEFAULT, SENTENCE_NEAREST_PRECEDE, SENTENCE_NEAREST_SUCCEED, HIGHEST_RANKED_GENE_CANDIDATE, SPECIES_PREFIX, /*This is a special case not assigned by a species assigner. It may happen in DypsisDisambiguation for resolving rejection contradictions within genesets.*/CANDIDATE_TRANSFER
}