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MALLET is a Java-based package for statistical natural language processing, document classification, clustering, topic modeling, information extraction, and other machine learning applications to text.
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/* Copyright (C) 2002 Univ. of Massachusetts Amherst, Computer Science Dept.
This file is part of "MALLET" (MAchine Learning for LanguagE Toolkit).
http://www.cs.umass.edu/~mccallum/mallet
This software is provided under the terms of the Common Public License,
version 1.0, as published by http://www.opensource.org. For further
information, see the file `LICENSE' included with this distribution. */
/**
@author Andrew McCallum [email protected]
*/
package cc.mallet.util;
import java.util.*;
import java.io.*;
import java.lang.reflect.InvocationTargetException;
import java.lang.reflect.Method;
import cc.mallet.util.BshInterpreter;
public abstract class CommandOption
{
static BshInterpreter interpreter;
/** Maps a Java class to the array of CommandOption objects that are owned by it. */
static HashMap class2options = new HashMap ();
Class owner;
/** The name of the argument, eg "input" */
java.lang.String name;
/** The display name of the argument type, eg "[TRUE|FALSE]" or "FILE" */
java.lang.String argName;
/** The type of the argument, if present */
Class argType;
boolean argRequired;
java.lang.String shortdoc;
java.lang.String longdoc;
java.lang.String fullName;
/** did this command option get processed, or do we just have default value */
boolean invoked = false;
public CommandOption (Class owner, java.lang.String name, java.lang.String argName,
Class argType, boolean argRequired,
java.lang.String shortdoc, java.lang.String longdoc)
{
this.owner = owner;
this.name = name;
this.argName = argName;
this.argType = argType;
this.argRequired = argRequired;
this.shortdoc = shortdoc;
this.longdoc = longdoc;
Package p = owner.getPackage();
this.fullName = (p != null ? p.toString() : "") + name;
if (interpreter == null)
interpreter = new BshInterpreter ();
if (owner != CommandOption.class) {
CommandOption.List options = (CommandOption.List) class2options.get (owner);
if (options == null) {
options = new CommandOption.List ("");
class2options.put (owner, options);
}
options.add (this);
}
}
/** @deprecated */
public CommandOption (Class owner, java.lang.String name, java.lang.String argName,
Class argType, boolean argRequired,
java.lang.String shortdoc)
{
this (owner, name, argName, argType, argRequired, shortdoc, null);
}
/** Give this CommandOption the opportunity to process the index'th argument in args.
Return the next unprocessed index. */
public int process (java.lang.String[] args, int index) {
//System.out.println (name + " processing arg " + args[index]);
if (args.length == 0)
return index;
// System.out.println(index + ": " + args[index]);
// Is there anything to process?
if (index >= args.length ||
args[index] == null || args[index].length() < 2 ||
args[index].charAt(0) != '-' || args[index].charAt(1) != '-')
return index;
// Determine what the command name is
java.lang.String optFullName = args[index].substring(2);
int dotIndex = optFullName.lastIndexOf('.');
java.lang.String optName = optFullName;
// Commands may have a package prefix
if (dotIndex != -1) {
java.lang.String optPackageName = optFullName.substring (0, dotIndex);
if (owner.getPackage() != null &&
! owner.getPackage().toString().endsWith(optPackageName))
return index;
optName = optFullName.substring (dotIndex+1);
}
// Does the option name match the name of this CommandOption?
if (! name.equals(optName))
return index;
// We have now determined that this CommandOption is the correct one
this.invoked = true;
index++;
if (args.length > index && (args[index].length() < 2
|| (args[index].charAt(0) != '-' && args[index].charAt(1) != '-'))) {
index = parseArg (args, index);
}
else {
if (argRequired) {
throw new IllegalArgumentException ("Missing argument for option " + optName);
}
else {
// xxx This is not parallel behavior to the above parseArg(String[],int) method.
parseArg (args, -index); // xxx was ""
}
//index++;
}
return index;
}
public static BshInterpreter getInterpreter ()
{
return interpreter;
}
public static java.lang.String[] process (java.lang.Class owner, java.lang.String[] args)
{
CommandOption.List options = (CommandOption.List) class2options.get (owner);
if (options == null)
throw new IllegalArgumentException ("No CommandOptions registered for class "+owner);
return options.process (args);
}
public static List getList (java.lang.Class owner)
{
CommandOption.List options = (CommandOption.List) class2options.get (owner);
if (options == null)
throw new IllegalArgumentException ("No CommandOptions registered for class "+owner);
return options;
}
public static void setSummary (java.lang.Class owner, java.lang.String summary)
{
CommandOption.List options = (CommandOption.List) class2options.get (owner);
if (options == null)
throw new IllegalArgumentException ("No CommandOption.List registered for class "+owner);
options.setSummary (summary);
}
public java.lang.String getFullName () {
return fullName;
}
public java.lang.String getName () {
return name;
}
public abstract java.lang.String defaultValueToString ();
public abstract java.lang.String valueToString ();
/** Return true is this CommandOption was matched by one of the processed arguments. */
public boolean wasInvoked () {
return invoked;
}
/** Called after this CommandOption matches an argument.
The default implementation simply calls parseArg(String), and
returns index+1; unless index is negative, in which case it calls
parseArg((String)null) and returns index. */
public int parseArg (java.lang.String args[], int index) {
if (index < 0) {
parseArg ((java.lang.String)null);
return index;
}
else {
parseArg (args[index]);
return index+1;
}
}
public void parseArg (java.lang.String arg) {}
/** To be overridden by subclasses;
"list" is the the CommandOption.List that called this option */
public void postParsing (CommandOption.List list) {}
/** For objects that can provide CommandOption.List's (which can be merged into other lists. */
public static interface ListProviding {
public CommandOption.List getCommandOptionList ();
}
public static void printOptionValues(Class owner) {
CommandOption.List options = (CommandOption.List) class2options.get (owner);
for (int i=0; i < options.size(); i++) {
CommandOption option = options.getCommandOption(i);
System.out.println(option.getName() + "\t=\t" + option.valueToString());
}
}
public static class List {
ArrayList options;
HashMap map;
java.lang.String summary;
private List (java.lang.String summary) {
this.options = new ArrayList ();
this.map = new HashMap ();
this.summary = summary;
add (new Boolean (CommandOption.class, "help", "TRUE|FALSE", false, false,
"Print this command line option usage information. "+
"Give argument of TRUE for longer documentation", null)
{ public void postParsing(CommandOption.List list) { printUsage(value); System.exit(-1); } });
add (new Object (CommandOption.class, "prefix-code", "'JAVA CODE'", true, null,
"Java code you want run before any other interpreted code. Note that the text "+
"is interpreted without modification, so unlike some other Java code options, "+
"you need to include any necessary 'new's when creating objects.", null));
add (new File (CommandOption.class, "config", "FILE", false, null,
"Read command option values from a file", null)
{ public void postParsing(CommandOption.List list) { readFromFile(value); } } );
}
public List (java.lang.String summary, CommandOption[] options) {
this(summary);
add(options);
}
public void setSummary (java.lang.String s)
{
this.summary = s;
}
public int size ()
{
return options.size();
}
public CommandOption getCommandOption (int index)
{
return (CommandOption) options.get(index);
}
public void add (CommandOption opt) {
options.add (opt);
map.put (opt.getFullName(), opt);
}
public void add (CommandOption[] opts) {
for (int i = 0; i < opts.length; i++)
add (opts[i]);
}
public void add (CommandOption.List opts) {
for (int i = 0; i < opts.size(); i++)
add (opts.getCommandOption(i));
}
public void add (Class owner) {
CommandOption.List options = (CommandOption.List) class2options.get (owner);
if (options == null)
throw new IllegalArgumentException ("No CommandOptions registered for class "+owner);
add (options);
}
/**
* Load configuration information from a file. If the filename ends
* with ".xml", the file is interpreted as a Java XML configuration file.
* Otherwise it is interpreted as a text config file (eg "key = value" on each line).
* Note that text files can only use Latin 1 (en-us) characters, while
* XML files can be UTF-8.
*/
public void readFromFile(java.io.File configurationFile) {
try {
Properties properties = new Properties();
if (configurationFile.getName().endsWith(".xml")) {
properties.loadFromXML(new FileInputStream(configurationFile));
}
else {
properties.load(new FileInputStream(configurationFile));
}
Enumeration keys = properties.propertyNames();
while (keys.hasMoreElements()) {
java.lang.String key = (java.lang.String) keys.nextElement();
java.lang.String[] values = properties.getProperty(key).split("\\s+");
boolean foundValue = false;
for (int i = 0; i < options.size(); i++) {
CommandOption option = (CommandOption) options.get(i);
if (option.name.equals(key)) {
foundValue = true;
option.parseArg(values, 0);
option.invoked = true;
break;
}
}
}
} catch (Exception e) {
System.err.println("Unable to process configuration file: " + e.getMessage());
}
}
/** Parse and process command-line options in args. Return sub-array of
args occurring after first non-recognized arg that doesn't begin with a dash. */
public java.lang.String[] process (java.lang.String[] args)
{
int index = 0;
while (index < args.length) {
int newIndex = index;
for (int i = 0; i < options.size(); i++) {
CommandOption o = (CommandOption)options.get(i);
newIndex = o.process (args, index);
if (newIndex != index) {
o.postParsing(this);
break;
}
}
if (newIndex == index) {
// All of the CommandOptions had their chance to claim the index'th option,,
// but none of them did.
printUsage(false);
throw new IllegalArgumentException ("Unrecognized option " + index + ": " +args[index]);
}
index = newIndex;
}
return new java.lang.String[0];
}
public int processOptions (java.lang.String[] args)
{
for (int index = 0; index < args.length;) {
int newIndex = index;
for (int i = 0; i < options.size(); i++) {
CommandOption o = (CommandOption)options.get(i);
newIndex = o.process (args, index);
if (newIndex != index) {
o.postParsing(this);
break;
}
}
if (newIndex == index) {
if (index < args.length && args[index].length() > 1 &&
args[index].charAt(0) == '-' && args[index].charAt(1) == '-') {
printUsage(false);
throw new IllegalArgumentException ("Unrecognized option "+args[index]);
}
return index;
}
index = newIndex;
}
return args.length;
}
public void printUsage (boolean printLongDoc)
{
// xxx Fix this to have nicer formatting later.
System.err.println (summary);
for (int i = 0; i < options.size(); i++) {
CommandOption o = (CommandOption) options.get(i);
System.err.println ("--"+ o.name + " " + o.argName + "\n " + o.shortdoc);
if (o.longdoc != null && printLongDoc)
System.err.println (" "+o.longdoc);
System.err.println (" Default is "+o.defaultValueToString());
}
}
public void logOptions (java.util.logging.Logger logger)
{
for (int i = 0; i < options.size(); i++) {
CommandOption o = (CommandOption) options.get(i);
logger.info (o.name+" = "+o.valueToString ());
}
}
}
public static class Boolean extends CommandOption
{
public boolean value, defaultValue;;
public Boolean (Class owner, java.lang.String name, java.lang.String argName,
boolean argRequired, boolean defaultValue,
java.lang.String shortdoc, java.lang.String longdoc)
{
super (owner, name, argName, Boolean.class, argRequired, shortdoc, longdoc);
this.defaultValue = value = defaultValue;
}
public boolean value () { return value; }
public void parseArg (java.lang.String arg) {
if (arg == null || arg.equalsIgnoreCase("true") || arg.equals("1"))
value = true;
else if (arg.equalsIgnoreCase("false") || arg.equals("0"))
value = false;
else
throw new IllegalArgumentException ("Boolean option should be true|false|0|1. Instead found "+arg);
}
public java.lang.String defaultValueToString() { return java.lang.Boolean.toString(defaultValue); }
public java.lang.String valueToString () { return java.lang.Boolean.toString (value); }
}
public static class Integer extends CommandOption
{
public int value, defaultValue;
public Integer (Class owner, java.lang.String name, java.lang.String argName,
boolean argRequired, int defaultValue,
java.lang.String shortdoc, java.lang.String longdoc)
{
super (owner, name, argName, Integer.class, argRequired, shortdoc, longdoc);
this.defaultValue = value = defaultValue;
}
public int value () { return value; }
public void parseArg (java.lang.String arg) { value = java.lang.Integer.parseInt(arg); }
public java.lang.String defaultValueToString() { return java.lang.Integer.toString(defaultValue); }
public java.lang.String valueToString () { return java.lang.Integer.toString (value); }
}
public static class IntegerArray extends CommandOption
{
public int[] value, defaultValue;
public IntegerArray (Class owner, java.lang.String name, java.lang.String argName,
boolean argRequired, int[] defaultValue,
java.lang.String shortdoc, java.lang.String longdoc)
{
super (owner, name, argName, IntegerArray.class, argRequired, shortdoc, longdoc);
this.defaultValue = value = defaultValue;
}
public int[] value () { return value; }
public void parseArg (java.lang.String arg) {
java.lang.String elts[] = arg.split(",");
value = new int[elts.length];
for (int i = 0; i < elts.length; i++)
value[i] = java.lang.Integer.parseInt(elts[i]);
}
public java.lang.String defaultValueToString() {
StringBuffer b = new StringBuffer();
java.lang.String sep = "";
for (int i = 0; i < defaultValue.length; i++) {
b.append(sep).append(java.lang.Integer.toString(defaultValue[i]));
sep = ",";
}
return b.toString();
}
public java.lang.String valueToString() {
StringBuffer b = new StringBuffer();
java.lang.String sep = "";
for (int i = 0; i < value.length; i++) {
b.append(sep).append(java.lang.Integer.toString(value[i]));
sep = ",";
}
return b.toString();
}
}
public static class Double extends CommandOption
{
public double value, defaultValue;
public Double (Class owner, java.lang.String name, java.lang.String argName,
boolean argRequired, double defaultValue,
java.lang.String shortdoc, java.lang.String longdoc)
{
super (owner, name, argName, Double.class, argRequired, shortdoc, longdoc);
this.defaultValue = value = defaultValue;
}
public double value () { return value; }
public void parseArg (java.lang.String arg) { value = java.lang.Double.parseDouble(arg); }
public java.lang.String defaultValueToString() { return java.lang.Double.toString(defaultValue); }
public java.lang.String valueToString () { return java.lang.Double.toString (value); }
}
public static class DoubleArray extends CommandOption
{
public double[] value, defaultValue;
public DoubleArray (Class owner, java.lang.String name, java.lang.String argName,
boolean argRequired, double[] defaultValue,
java.lang.String shortdoc, java.lang.String longdoc)
{
super (owner, name, argName, IntegerArray.class, argRequired, shortdoc, longdoc);
this.defaultValue = value = defaultValue;
}
public double[] value () { return value; }
public void parseArg (java.lang.String arg) {
java.lang.String elts[] = arg.split(",");
value = new double[elts.length];
for (int i = 0; i < elts.length; i++)
value[i] = java.lang.Double.parseDouble(elts[i]);
}
public java.lang.String defaultValueToString() {
StringBuffer b = new StringBuffer();
java.lang.String sep = "";
for (int i = 0; i < defaultValue.length; i++) {
b.append(sep).append(java.lang.Double.toString(defaultValue[i]));
sep = ",";
}
return b.toString();
}
public java.lang.String valueToString() {
StringBuffer b = new StringBuffer();
java.lang.String sep = "";
for (int i = 0; i < value.length; i++) {
b.append(sep).append(java.lang.Double.toString(value[i]));
sep = ",";
}
return b.toString();
}
}
public static class String extends CommandOption
{
public java.lang.String value, defaultValue;
public String (Class owner, java.lang.String name, java.lang.String argName,
boolean argRequired, java.lang.String defaultValue,
java.lang.String shortdoc, java.lang.String longdoc)
{
super (owner, name, argName, java.lang.String.class, argRequired, shortdoc, longdoc);
this.defaultValue = value = defaultValue;
}
public java.lang.String value () { return value; }
public void parseArg (java.lang.String arg) { value = arg; }
public java.lang.String defaultValueToString() { return defaultValue; }
public java.lang.String valueToString() { return value; }
}
public static class SpacedStrings extends CommandOption
{
public java.lang.String[] value, defaultValue;
public SpacedStrings (Class owner, java.lang.String name, java.lang.String argName,
boolean argRequired, java.lang.String[] defaultValue,
java.lang.String shortdoc, java.lang.String longdoc)
{
super (owner, name, argName, java.lang.String.class, argRequired, shortdoc, longdoc);
this.defaultValue = value = defaultValue;
}
public java.lang.String[] value () { return value; }
public int parseArg (java.lang.String args[], int index)
{
int count = 0;
this.value = null;
while (index < args.length
&& (args[index].length() < 2
|| (args[index].charAt(0) != '-' && args[index].charAt(1) != '-'))) {
count++;
java.lang.String[] oldValue = value;
value = new java.lang.String[count];
if (oldValue != null)
System.arraycopy (oldValue, 0, value, 0, oldValue.length);
value[count-1] = args[index];
index++;
}
return index;
}
public java.lang.String defaultValueToString() {
if (defaultValue == null)
return "(null)";
StringBuffer sb = new StringBuffer();
for (int i = 0; i < defaultValue.length; i++) {
sb.append (defaultValue[i]);
if (i < defaultValue.length-1)
sb.append (" ");
}
return sb.toString();
}
public java.lang.String valueToString () {
if (value == null)
return "(null)";
java.lang.String val = "";
for (int i = 0; i < value.length; i++) {
val += value [i] + " ";
}
return val;
}
}
public static class File extends CommandOption
{
public java.io.File value, defaultValue;
public File (Class owner, java.lang.String name, java.lang.String argName,
boolean argRequired, java.io.File defaultValue,
java.lang.String shortdoc, java.lang.String longdoc)
{
super (owner, name, argName, java.io.File.class, argRequired, shortdoc, longdoc);
this.defaultValue = value = defaultValue;
}
public java.io.File value () { return value; }
public void parseArg (java.lang.String arg) { value = new java.io.File(arg); }
public java.lang.String defaultValueToString() { return defaultValue == null ? null : defaultValue.toString(); }
public java.lang.String valueToString () { return value == null ? null : value.toString(); };
}
// Value is a string that can take on only a limited set of values
public static class Set extends CommandOption
{
public java.lang.String value, defaultValue;
java.lang.String[] setContents;
java.lang.String contentsString;
public Set (Class owner, java.lang.String name, java.lang.String argName,
boolean argRequired, java.lang.String[] setContents, int defaultIndex,
java.lang.String shortdoc, java.lang.String longdoc)
{
super (owner, name, argName, java.io.File.class, argRequired, shortdoc, longdoc);
this.defaultValue = this.value = setContents[defaultIndex];
this.setContents = setContents;
StringBuffer sb = new StringBuffer ();
for (int i = 0; i < setContents.length; i++) {
sb.append (setContents[i]);
sb.append (",");
}
this.contentsString = sb.toString();
}
public java.lang.String value () { return value; }
public void parseArg (java.lang.String arg)
{
value = null;
for (int i = 0; i < setContents.length; i++)
if (setContents[i].equals(arg))
value = setContents[i];
if (value == null)
throw new IllegalArgumentException ("Unrecognized option argument \""+arg+"\" not in set "+contentsString);
}
public java.lang.String defaultValueToString() { return defaultValue; }
public java.lang.String valueToString() { return value; }
}
public static class Object extends CommandOption
{
public java.lang.Object value, defaultValue;
public Object (Class owner, java.lang.String name, java.lang.String argName,
boolean argRequired, java.lang.Object defaultValue,
java.lang.String shortdoc, java.lang.String longdoc)
{
super (owner, name, argName, java.lang.Object.class, argRequired, shortdoc, longdoc);
this.defaultValue = value = defaultValue;
}
public java.lang.Object value () { return value; }
public void parseArg (java.lang.String arg) {
try {
value = interpreter.eval (arg);
} catch (bsh.EvalError e) {
throw new IllegalArgumentException ("Java interpreter eval error\n"+e);
}
}
public java.lang.String defaultValueToString() { return defaultValue == null ? null : defaultValue.toString(); }
public java.lang.String valueToString() { return value == null ? null : value.toString(); }
}
public static class ObjectFromBean extends Object
{
public ObjectFromBean (Class owner, java.lang.String name, java.lang.String argName,
boolean argRequired, java.lang.Object defValue,
java.lang.String shortdoc, java.lang.String longdoc)
{
super (owner, name, argName, argRequired, java.lang.Object.class, shortdoc, longdoc);
defaultValue = value = defValue;
}
public java.lang.Object value () { return value; }
public void parseArg (java.lang.String arg) {
// parse something like MaxEntTrainer,gaussianPriorVariance=10,numIterations=20
//System.out.println("Arg = " + arg);
// First, split the argument at commas.
java.lang.String fields[] = arg.split(",");
//Massage constructor name, so that MaxEnt, MaxEntTrainer, new MaxEntTrainer()
// all call new MaxEntTrainer()
java.lang.String constructorName = fields[0];
if (constructorName.contains("(") || constructorName.contains(";")) // if contains ( or a ;, pass it though
super.parseArg(arg);
else {
super.parseArg("new " + constructorName + "()"); // use default constructor to make the object
}
// Call the appropriate set... methods that appeared comma-separated
// find methods associated with the class we just built
Method methods[] = this.value.getClass().getMethods();
// find setters corresponding to parameter names.
for (int i=1; i© 2015 - 2025 Weber Informatics LLC | Privacy Policy