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/**
* JulieXMLBuffer.java
*
* Copyright (c) 2010, JULIE Lab.
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the Common Public License v1.0
*
* Author: chew
*
* Current version: 1.0
* Since version: 1.0
*
* Creation date: 13.12.2010
**/
package de.julielab.xml;
import com.ximpleware.ParseException;
import com.ximpleware.extended.IByteBuffer;
import com.ximpleware.extended.ParseExceptionHuge;
import java.io.*;
import java.util.ArrayList;
import java.util.List;
import java.util.zip.GZIPInputStream;
/**
* Copied from the original XMLBuffer in VTD XML version 2.10. Added the
* "getFragment(long, long)" method which just does what seemingly "getBytes"
* was meant for but not yet implemented.
*
* @author chew
*/
public class JulieXMLBuffer implements IByteBuffer {
byte[][] bufferArray;
long length;
public JulieXMLBuffer() {
// ArrayList al = new ArrayList();
}
public JulieXMLBuffer(byte[] ba) {
if (ba == null)
throw new IllegalArgumentException("ba can't be null ");
if (ba.length > 1 << 30)
throw new IllegalArgumentException("ba should be shorter than 1G bytes ");
bufferArray = new byte[1][];
bufferArray[0] = ba;
length = ba.length;
}
/**
* JULIE Lab adopted version of the method. Does support GZIP files. GZIP
* files must end with ".gz" or ".gzip" in order to be recognized.
*
* @param fileName
* @throws java.io.IOException
* @throws ParseException
*
*/
public void readFile(String fileName) throws java.io.IOException, ParseExceptionHuge {
File f = new File(fileName);
// we don't get the file length from the File object because it might be
// gzipped
length = 0;
List buffers = new ArrayList<>();
// fill the buffers with doc content
InputStream fis = new FileInputStream(f);
if (fileName.endsWith(".gz") || fileName.endsWith(".gzip"))
fis = new GZIPInputStream(fis);
try {
int byteArrayLen = 0;
int numOfBytesLastPage = 0;
int currentPage = 0;
// Since we also support gzipped file, we don't know the
// uncompressed file length at the beginning and thus we don't know
// the number of pages we need. We will just continue allocate full
// pages until the whole file is read - or 256GB are reached - and
// then trim the last page to its actual size.
boolean stop = false;
while (!stop) {
numOfBytesLastPage = 0;
buffers.add(new byte[1 << 30]);
byteArrayLen = 1 << 30;
int offset = 0;
int numRead = 0;
int numOfBytes = 1048576;// I choose this value randomly,
// any other (not too big) value also can be here.
if (byteArrayLen - offset < numOfBytes) {
numOfBytes = byteArrayLen - offset;
}
// stop will only be set to false if we still have file contents
// to read
stop = true;
while (offset < byteArrayLen
&& (numRead = fis.read(buffers.get(currentPage), offset, numOfBytes)) >= 0) {
stop = false;
offset += numRead;
if (byteArrayLen - offset < numOfBytes) {
numOfBytes = byteArrayLen - offset;
}
numOfBytesLastPage += numRead;
}
length += numOfBytesLastPage;
if (length >= (1L << 38)) {
throw new ParseExceptionHuge("document too big > 256 Gbyte");
}
++currentPage;
}
// if the last page wasn't full - which will nearly never be
// the case - we trim it to its actual size
if (numOfBytesLastPage < (1 << 30)) {
int lastPageIndex = buffers.size() - 1;
byte[] lastPage = new byte[numOfBytesLastPage];
System.arraycopy(buffers.get(lastPageIndex), 0, lastPage, 0, numOfBytesLastPage);
buffers.set(lastPageIndex, lastPage);
}
bufferArray = buffers.toArray(new byte[buffers.size()][]);
} finally {
fis.close();
}
}
/**
*
*/
public final byte byteAt(long index) {
return bufferArray[(int) (index >> 30)][(int) (index & 0x3fffffff)];
}
/**
* Return a byte array filled with content from underlying byte storage.
*
* @return byte[]
* @param offset
* int bytes offset (not UTF char unit)
* @param len
* int
*/
public byte[] getBytes(int offset, int len) {
return (byte[]) null;
}
/**
* Total size in terms of # of bytes.
*
* @return int
*/
public long length() {
return length;
}
// get the whole XML
public byte[] getBytes() {
return null;
}
public void writeToFileOutputStream(java.io.FileOutputStream ost, long os, long len) throws java.io.IOException {
// page size is 1<<30
// then find the remainder
// ost's page #
int pageN = (int) (os >> 30);
// ost's remainder
int pos = (int) (os & ((1 << 30) - 1));
// only write to outputStream once
if (pos + len <= 1 << 30) {
ost.write(bufferArray[pageN], pos, (int) len);
return;
}
// write the head
ost.write(bufferArray[pageN], pos, (1 << 30) - pos);
pageN++;
len -= (1 << 30) - pos;
// write the mid sections
while (len > (1 << 30)) {
ost.write(bufferArray[pageN], 0, (1 << 30));
pageN++;
len -= (1 << 30);
}
// write the tail
ost.write(bufferArray[pageN], 0, (int) len);
return;
}
/**
* Convenience JULIE Lab method. It's basically a copy of
* {@link #writeToFileOutputStream(java.io.FileOutputStream, long, long)}
* but allows any kind of output stream as first parameter.
*
* @param ost
* Some OutputStream to write the specified XML buffer portion
* to.
* @param os
* The offset, in bytes, to write to ost.
* @param len
* The number of bytes to write, beginning at offset.
* @throws java.io.IOException
* If writing to the OutputStream fails.
*/
public void writeToOutputStream(OutputStream ost, long os, long len) throws java.io.IOException {
// page size is 1<<30
// then find the remainder
// ost's page #
int pageN = (int) (os >> 30);
// ost's remainder
int pos = (int) (os & ((1 << 30) - 1));
// only write to outputStream once
if (pos + len <= 1 << 30) {
ost.write(bufferArray[pageN], pos, (int) len);
return;
}
// write the head
ost.write(bufferArray[pageN], pos, (1 << 30) - pos);
pageN++;
len -= (1 << 30) - pos;
// write the mid sections
while (len > (1 << 30)) {
ost.write(bufferArray[pageN], 0, (1 << 30));
pageN++;
len -= (1 << 30);
}
// write the tail
ost.write(bufferArray[pageN], 0, (int) len);
return;
}
/**
* Convenience JULIE Lab method. It uses
* {@link #writeToOutputStream(OutputStream, long, long)} with a
* ByteArrayOutputStream to return the specified buffer portion as a byte
* array.
*
* @param os Offset of the XML buffer to begin extraction, in bytes.
* @param len Number of bytes to extract.
* @return The bytes extracted from the XML buffer.
* @throws java.io.IOException If writing to the internal ByteArrayOutputStream fails.
*/
public byte[] getFragment(long os, long len) throws java.io.IOException {
ByteArrayOutputStream bos = new ByteArrayOutputStream();
writeToOutputStream(bos, os, len);
return bos.toByteArray();
}
@Override
public void close() {
}
}
