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ELKI - Main Module – Open-Source Data-Mining Framework with Index Acceleration
package de.lmu.ifi.dbs.elki.index.tree;
import de.lmu.ifi.dbs.elki.index.Index;
/*
This file is part of ELKI:
Environment for Developing KDD-Applications Supported by Index-Structures
Copyright (C) 2015
Ludwig-Maximilians-Universität München
Lehr- und Forschungseinheit für Datenbanksysteme
ELKI Development Team
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU Affero General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU Affero General Public License for more details.
You should have received a copy of the GNU Affero General Public License
along with this program. If not, see the type of Node used in the index
* @param the type of Entry used in the index
*/
public abstract class IndexTree, E extends Entry> implements Index {
/**
* The file storing the entries of this index.
*/
private final PageFile file;
/**
* True if this index is already initialized.
*/
protected boolean initialized = false;
/**
* The capacity of a directory node (= 1 + maximum number of entries in a
* directory node).
*/
protected int dirCapacity;
/**
* The capacity of a leaf node (= 1 + maximum number of entries in a leaf
* node).
*/
protected int leafCapacity;
/**
* The minimum number of entries in a directory node.
*/
protected int dirMinimum;
/**
* The minimum number of entries in a leaf node.
*/
protected int leafMinimum;
/**
* The entry representing the root node.
*/
private E rootEntry;
/**
* Constructor.
*
* @param pagefile page file to use
*/
public IndexTree(PageFile pagefile) {
super();
this.file = pagefile;
}
/**
* Initialize the tree if the page file already existed.
*/
@Override
public void initialize() {
TreeIndexHeader header = createHeader();
if (this.file.initialize(header)) {
initializeFromFile(header, file);
}
rootEntry = createRootEntry();
}
/**
* Get the (STATIC) logger for this class.
*
* @return the static logger
*/
protected abstract Logging getLogger();
/**
* Returns the entry representing the root if this index.
*
* @return the entry representing the root if this index
*/
public final E getRootEntry() {
return rootEntry;
}
/**
* Page ID of the root entry.
*
* @return page id
*/
public final int getRootID() {
return getPageID(rootEntry);
}
/**
* Reads the root node of this index from the file.
*
* @return the root node of this index
*/
public N getRoot() {
return file.readPage(getPageID(rootEntry));
}
/**
* Test if a given ID is the root.
*
* @param page Page to test
* @return Whether the page ID is the root
*/
protected boolean isRoot(N page) {
return getRootID() == page.getPageID();
}
/**
* Convert a directory entry to its page id.
*
* @param entry Entry
* @return Page ID
*/
protected int getPageID(Entry entry) {
if (entry.isLeafEntry()) {
throw new AbortException("Leafs do not have page ids!");
}
return ((DirectoryEntry) entry).getPageID();
}
/**
* Returns the node with the specified id.
*
* @param nodeID the page id of the node to be returned
* @return the node with the specified id
*/
public N getNode(int nodeID) {
if (nodeID == getPageID(rootEntry)) {
return getRoot();
} else {
return file.readPage(nodeID);
}
}
/**
* Returns the node that is represented by the specified entry.
*
* @param entry the entry representing the node to be returned
* @return the node that is represented by the specified entry
*/
public final N getNode(E entry) {
return getNode(getPageID(entry));
}
/**
* Write a node to the backing storage.
*
* @param node Node to write
*/
protected void writeNode(N node) {
file.writePage(node);
}
/**
* Delete a node from the backing storage.
*
* @param node Node to delete
*/
protected void deleteNode(N node) {
file.deletePage(node.getPageID());
}
/**
* Creates a header for this index structure which is an instance of
* {@link TreeIndexHeader}. Subclasses may need to overwrite this method if
* they need a more specialized header.
*
* @return a new header for this index structure
*/
protected TreeIndexHeader createHeader() {
return new TreeIndexHeader(file.getPageSize(), dirCapacity, leafCapacity, dirMinimum, leafMinimum);
}
/**
* Initializes this index from an existing persistent file.
*
* @param header File header
* @param file Page file
*/
public void initializeFromFile(TreeIndexHeader header, PageFile file) {
this.dirCapacity = header.getDirCapacity();
this.leafCapacity = header.getLeafCapacity();
this.dirMinimum = header.getDirMinimum();
this.leafMinimum = header.getLeafMinimum();
if (getLogger().isDebugging()) {
StringBuilder msg = new StringBuilder();
msg.append(getClass());
msg.append("\n file = ").append(file.getClass());
getLogger().debugFine(msg.toString());
}
this.initialized = true;
}
/**
* Initializes the index.
*
* @param exampleLeaf an object that will be stored in the index
*/
protected final void initialize(E exampleLeaf) {
initializeCapacities(exampleLeaf);
// create empty root
createEmptyRoot(exampleLeaf);
final Logging log = getLogger();
if (log.isStatistics()) {
String cls = this.getClass().getName();
log.statistics(new LongStatistic(cls + ".directory.capacity", dirCapacity));
log.statistics(new LongStatistic(cls + ".directory.minfill", dirMinimum));
log.statistics(new LongStatistic(cls + ".leaf.capacity", leafCapacity));
log.statistics(new LongStatistic(cls + ".leaf.minfill", leafMinimum));
}
initialized = true;
}
/**
* Returns the path to the root of this tree.
*
* @return the path to the root of this tree
*/
public final IndexTreePath getRootPath() {
return new IndexTreePath<>(null, rootEntry, -1);
}
/**
* Determines the maximum and minimum number of entries in a node.
*
* @param exampleLeaf an object that will be stored in the index
*/
protected abstract void initializeCapacities(E exampleLeaf);
/**
* Creates an empty root node and writes it to file.
*
* @param exampleLeaf an object that will be stored in the index
*/
protected abstract void createEmptyRoot(E exampleLeaf);
/**
* Creates an entry representing the root node.
*
* @return an entry representing the root node
*/
protected abstract E createRootEntry();
/**
* Creates a new leaf node with the specified capacity.
*
* @return a new leaf node
*/
protected abstract N createNewLeafNode();
/**
* Creates a new directory node with the specified capacity.
*
* @return a new directory node
*/
protected abstract N createNewDirectoryNode();
/**
* Performs necessary operations before inserting the specified entry.
*
* @param entry the entry to be inserted
*/
protected void preInsert(E entry) {
// Default is no-op.
}
/**
* Performs necessary operations after deleting the specified entry.
*
* @param entry the entry that was removed
*/
protected void postDelete(E entry) {
// Default is no-op.
}
/**
* Log some statistics, if enabled.
*/
@Override
public void logStatistics() {
file.logStatistics();
}
/**
* Get the page size of the backing storage.
*
* @return Page size
*/
protected int getPageSize() {
return file.getPageSize();
}
/**
* Directly access the backing page file.
*
* @return the page file
*/
@Deprecated
protected PageFile getFile() {
return file;
}
}