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Builds the hapi fhir base. Requires Common lang, commons-text, and guava be built first.

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/*
 * #%L
 * HAPI FHIR - Core Library
 * %%
 * Copyright (C) 2014 - 2024 Smile CDR, Inc.
 * %%
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 *
 * http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 * #L%
 */
package ca.uhn.fhir.parser;

import ca.uhn.fhir.context.ConfigurationException;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.context.ParserOptions;
import ca.uhn.fhir.model.api.IResource;
import ca.uhn.fhir.rest.api.EncodingEnum;
import org.hl7.fhir.instance.model.api.IAnyResource;
import org.hl7.fhir.instance.model.api.IBase;
import org.hl7.fhir.instance.model.api.IBaseResource;
import org.hl7.fhir.instance.model.api.IIdType;

import java.io.IOException;
import java.io.InputStream;
import java.io.Reader;
import java.io.Writer;
import java.util.Collection;
import java.util.List;
import java.util.Set;

/**
 * A parser, which can be used to convert between HAPI FHIR model/structure objects, and their respective String wire
 * formats, in either XML or JSON.
 * 

* Thread safety: Parsers are not guaranteed to be thread safe. Create a new parser instance for every thread or * every message being parsed/encoded. *

*/ public interface IParser { /** * Encodes a resource using the parser's given encoding format. * * @param theResource The resource to encode. Must not be null. * @return A string representation of the encoding * @throws DataFormatException If any invalid elements within the contents to be encoded prevent successful encoding. */ String encodeResourceToString(IBaseResource theResource) throws DataFormatException; /** * Encodes a resource using the parser's given encoding format. * * @param theResource The resource to encode. Must not be null. * @param theWriter The writer to write to. * @throws DataFormatException If any invalid elements within the contents to be encoded prevent successful encoding. */ void encodeResourceToWriter(IBaseResource theResource, Writer theWriter) throws IOException, DataFormatException; /** * Encodes any FHIR element to a string. * If a {@link IBaseResource resource object} is passed in, the resource will be encoded using standard FHIR * encoding rules. If a {@link org.hl7.fhir.instance.model.api.IPrimitiveType primitive datatype} is passed in, * the string value of the primitive type is encoded. Any extensions on the primitive type are not encoded. * If any other object is passed in, a fragment is encoded. The format of the fragment depends on the encoding: *
    *
  • JSON: The fragment is output as a simple JSON object, exactly as it would appear within an encoded resource.
  • *
  • XML: The fragment is output as an XML element as it would appear within an encoded resource, however it is wrapped in an element called <element> in order to avoid producing a document with multiple root tags.
  • *
  • RDF/Turtle: This mode is not supported and will throw an {@link ca.uhn.fhir.rest.server.exceptions.InternalErrorException}
  • *
* * @since 6.8.0 */ String encodeToString(IBase theElement) throws DataFormatException; /** * Encodes any FHIR element to a writer. * If a {@link IBaseResource resource object} is passed in, the resource will be encoded using standard FHIR * encoding rules. If a {@link org.hl7.fhir.instance.model.api.IPrimitiveType primitive datatype} is passed in, * the string value of the primitive type is encoded. Any extensions on the primitive type are not encoded. * If any other object is passed in, a fragment is encoded. The format of the fragment depends on the encoding: *
    *
  • JSON: The fragment is output as a simple JSON object, exactly as it would appear within an encoded resource.
  • *
  • XML: The fragment is output as an XML element as it would appear within an encoded resource, however it is wrapped in an element called <element> in order to avoid producing a document with multiple root tags.
  • *
  • RDF/Turtle: This mode is not supported and will throw an {@link ca.uhn.fhir.rest.server.exceptions.InternalErrorException}
  • *
* * @since 6.8.0 */ void encodeToWriter(IBase theElement, Writer theWriter) throws DataFormatException, IOException; /** * If not set to null (as is the default) this ID will be used as the ID in any * resources encoded by this parser */ IIdType getEncodeForceResourceId(); /** * When encoding, force this resource ID to be encoded as the resource ID */ IParser setEncodeForceResourceId(IIdType theForceResourceId); /** * Which encoding does this parser instance produce? */ EncodingEnum getEncoding(); /** * Gets the preferred types, as set using {@link #setPreferTypes(List)} * * @return Returns the preferred types, or null * @see #setPreferTypes(List) */ List> getPreferTypes(); /** * If set, when parsing resources the parser will try to use the given types when possible, in * the order that they are provided (from highest to lowest priority). For example, if a custom * type which declares to implement the Patient resource is passed in here, and the * parser is parsing a Bundle containing a Patient resource, the parser will use the given * custom type. *

* This feature is related to, but not the same as the * {@link FhirContext#setDefaultTypeForProfile(String, Class)} feature. * setDefaultTypeForProfile is used to specify a type to be used * when a resource explicitly declares support for a given profile. This * feature specifies a type to be used irrespective of the profile declaration * in the metadata statement. *

* * @param thePreferTypes The preferred types, or null */ void setPreferTypes(List> thePreferTypes); /** * Returns true if resource IDs should be omitted * * @see #setOmitResourceId(boolean) * @since 1.1 */ boolean isOmitResourceId(); /** * If set to true (default is false) the ID of any resources being encoded will not be * included in the output. Note that this does not apply to contained resources, only to root resources. In other * words, if this is set to true, contained resources will still have local IDs but the outer/containing * ID will not have an ID. *

* If the resource being encoded is a Bundle or Parameters resource, this setting only applies to the * outer resource being encoded, not any resources contained wihthin. *

* * @param theOmitResourceId Should resource IDs be omitted * @return Returns a reference to this parser so that method calls can be chained together * @since 1.1 */ IParser setOmitResourceId(boolean theOmitResourceId); /** * If set to true (which is the default), resource references containing a version * will have the version removed when the resource is encoded. This is generally good behaviour because * in most situations, references from one resource to another should be to the resource by ID, not * by ID and version. In some cases though, it may be desirable to preserve the version in resource * links. In that case, this value should be set to false. * * @return Returns the parser instance's configuration setting for stripping versions from resource references when * encoding. This method will retun null if no value is set, in which case * the value from the {@link ParserOptions} will be used (default is true) * @see ParserOptions */ Boolean getStripVersionsFromReferences(); /** * If set to true (which is the default), resource references containing a version * will have the version removed when the resource is encoded. This is generally good behaviour because * in most situations, references from one resource to another should be to the resource by ID, not * by ID and version. In some cases though, it may be desirable to preserve the version in resource * links. In that case, this value should be set to false. *

* This method provides the ability to globally disable reference encoding. If finer-grained * control is needed, use {@link #setDontStripVersionsFromReferencesAtPaths(String...)} *

* * @param theStripVersionsFromReferences Set this to false to prevent the parser from removing resource versions from references (or null to apply the default setting from the {@link ParserOptions} * @return Returns a reference to this parser so that method calls can be chained together * @see #setDontStripVersionsFromReferencesAtPaths(String...) * @see ParserOptions */ IParser setStripVersionsFromReferences(Boolean theStripVersionsFromReferences); /** * Is the parser in "summary mode"? See {@link #setSummaryMode(boolean)} for information * * @see {@link #setSummaryMode(boolean)} for information */ boolean isSummaryMode(); /** * If set to true (default is false) only elements marked by the FHIR specification as * being "summary elements" will be included. * * @return Returns a reference to this parser so that method calls can be chained together */ IParser setSummaryMode(boolean theSummaryMode); /** * Parses a resource * * @param theResourceType The resource type to use. This can be used to explicitly specify a class which extends a built-in type * (e.g. a custom type extending the default Patient class) * @param theReader The reader to parse input from. Note that the Reader will not be closed by the parser upon completion. * @return A parsed resource * @throws DataFormatException If the resource can not be parsed because the data is not recognized or invalid for any reason */ T parseResource(Class theResourceType, Reader theReader) throws DataFormatException; /** * Parses a resource * * @param theResourceType The resource type to use. This can be used to explicitly specify a class which extends a built-in type * (e.g. a custom type extending the default Patient class) * @param theInputStream The InputStream to parse input from, with an implied charset of UTF-8. Note that the InputStream will not be closed by the parser upon completion. * @return A parsed resource * @throws DataFormatException If the resource can not be parsed because the data is not recognized or invalid for any reason */ T parseResource(Class theResourceType, InputStream theInputStream) throws DataFormatException; /** * Parses a resource * * @param theResourceType The resource type to use. This can be used to explicitly specify a class which extends a built-in type * (e.g. a custom type extending the default Patient class) * @param theString The string to parse * @return A parsed resource * @throws DataFormatException If the resource can not be parsed because the data is not recognized or invalid for any reason */ T parseResource(Class theResourceType, String theString) throws DataFormatException; /** * Parses a resource * * @param theReader The reader to parse input from. Note that the Reader will not be closed by the parser upon completion. * @return A parsed resource. Note that the returned object will be an instance of {@link IResource} or * {@link IAnyResource} depending on the specific FhirContext which created this parser. * @throws DataFormatException If the resource can not be parsed because the data is not recognized or invalid for any reason */ IBaseResource parseResource(Reader theReader) throws ConfigurationException, DataFormatException; /** * Parses a resource * * @param theInputStream The InputStream to parse input from (charset is assumed to be UTF-8). * Note that the stream will not be closed by the parser upon completion. * @return A parsed resource. Note that the returned object will be an instance of {@link IResource} or * {@link IAnyResource} depending on the specific FhirContext which created this parser. * @throws DataFormatException If the resource can not be parsed because the data is not recognized or invalid for any reason */ IBaseResource parseResource(InputStream theInputStream) throws ConfigurationException, DataFormatException; /** * Parses a resource * * @param theMessageString The string to parse * @return A parsed resource. Note that the returned object will be an instance of {@link IResource} or * {@link IAnyResource} depending on the specific FhirContext which created this parser. * @throws DataFormatException If the resource can not be parsed because the data is not recognized or invalid for any reason */ IBaseResource parseResource(String theMessageString) throws ConfigurationException, DataFormatException; /** * If provided, specifies the elements which should NOT be encoded. Valid values for this * field would include: *
    *
  • Patient - Don't encode patient and all its children
  • *
  • Patient.name - Don't encode the patient's name
  • *
  • Patient.name.family - Don't encode the patient's family name
  • *
  • *.text - Don't encode the text element on any resource (only the very first position may contain a * wildcard)
  • *
*

* DSTU2 note: Note that values including meta, such as Patient.meta * will work for DSTU2 parsers, but values with subelements on meta such * as Patient.meta.lastUpdated will only work in * DSTU3+ mode. *

* * @param theDontEncodeElements The elements to encode * @see #setEncodeElements(Set) */ IParser setDontEncodeElements(Collection theDontEncodeElements); /** * If provided, specifies the elements which should be encoded, to the exclusion of all others. Valid values for this * field would include: *
    *
  • Patient - Encode patient and all its children
  • *
  • Patient.name - Encode only the patient's name
  • *
  • Patient.name.family - Encode only the patient's family name
  • *
  • *.text - Encode the text element on any resource (only the very first position may contain a * wildcard)
  • *
  • *.(mandatory) - This is a special case which causes any mandatory fields (min > 0) to be encoded
  • *
* * @param theEncodeElements The elements to encode * @see #setDontEncodeElements(Collection) */ IParser setEncodeElements(Set theEncodeElements); /** * If set to true (default is false), the values supplied * to {@link #setEncodeElements(Set)} will not be applied to the root * resource (typically a Bundle), but will be applied to any sub-resources * contained within it (i.e. search result resources in that bundle) */ boolean isEncodeElementsAppliesToChildResourcesOnly(); /** * If set to true (default is false), the values supplied * to {@link #setEncodeElements(Set)} will not be applied to the root * resource (typically a Bundle), but will be applied to any sub-resources * contained within it (i.e. search result resources in that bundle) */ void setEncodeElementsAppliesToChildResourcesOnly(boolean theEncodeElementsAppliesToChildResourcesOnly); /** * Registers an error handler which will be invoked when any parse errors are found * * @param theErrorHandler The error handler to set. Must not be null. */ IParser setParserErrorHandler(IParserErrorHandler theErrorHandler); /** * Sets the "pretty print" flag, meaning that the parser will encode resources with human-readable spacing and * newlines between elements instead of condensing output as much as possible. * * @param thePrettyPrint The flag * @return Returns an instance of this parser so that method calls can be chained together */ IParser setPrettyPrint(boolean thePrettyPrint); /** * Sets the server's base URL used by this parser. If a value is set, resource references will be turned into * relative references if they are provided as absolute URLs but have a base matching the given base. * * @param theUrl The base URL, e.g. "http://example.com/base" * @return Returns an instance of this parser so that method calls can be chained together */ IParser setServerBaseUrl(String theUrl); /** * If set to true (which is the default), the Bundle.entry.fullUrl will override the Bundle.entry.resource's * resource id if the fullUrl is defined. This behavior happens when parsing the source data into a Bundle object. Set this * to false if this is not the desired behavior (e.g. the client code wishes to perform additional * validation checks between the fullUrl and the resource id). * * @param theOverrideResourceIdWithBundleEntryFullUrl Set this to false to prevent the parser from overriding resource ids with the * Bundle.entry.fullUrl (or null to apply the default setting from the {@link ParserOptions}) * @return Returns a reference to this parser so that method calls can be chained together * @see ParserOptions */ IParser setOverrideResourceIdWithBundleEntryFullUrl(Boolean theOverrideResourceIdWithBundleEntryFullUrl); /** * If set to true (default is false), narratives will not be included in the encoded * values. */ IParser setSuppressNarratives(boolean theSuppressNarratives); /** * Returns the value supplied to {@link IParser#setDontStripVersionsFromReferencesAtPaths(String...)} * or null if no value has been set for this parser (in which case the default from * the {@link ParserOptions} will be used} * * @see #setDontStripVersionsFromReferencesAtPaths(String...) * @see #setStripVersionsFromReferences(Boolean) * @see ParserOptions */ Set getDontStripVersionsFromReferencesAtPaths(); /** * If supplied value(s), any resource references at the specified paths will have their * resource versions encoded instead of being automatically stripped during the encoding * process. This setting has no effect on the parsing process. *

* This method provides a finer-grained level of control than {@link #setStripVersionsFromReferences(Boolean)} * and any paths specified by this method will be encoded even if {@link #setStripVersionsFromReferences(Boolean)} * has been set to true (which is the default) *

* * @param thePaths A collection of paths for which the resource versions will not be removed automatically * when serializing, e.g. "Patient.managingOrganization" or "AuditEvent.object.reference". Note that * only resource name and field names with dots separating is allowed here (no repetition * indicators, FluentPath expressions, etc.). Set to null to use the value * set in the {@link ParserOptions} * @return Returns a reference to this parser so that method calls can be chained together * @see #setStripVersionsFromReferences(Boolean) * @see ParserOptions */ IParser setDontStripVersionsFromReferencesAtPaths(String... thePaths); /** * If supplied value(s), any resource references at the specified paths will have their * resource versions encoded instead of being automatically stripped during the encoding * process. This setting has no effect on the parsing process. *

* This method provides a finer-grained level of control than {@link #setStripVersionsFromReferences(Boolean)} * and any paths specified by this method will be encoded even if {@link #setStripVersionsFromReferences(Boolean)} * has been set to true (which is the default) *

* * @param thePaths A collection of paths for which the resource versions will not be removed automatically * when serializing, e.g. "Patient.managingOrganization" or "AuditEvent.object.reference". Note that * only resource name and field names with dots separating is allowed here (no repetition * indicators, FluentPath expressions, etc.). Set to null to use the value * set in the {@link ParserOptions} * @return Returns a reference to this parser so that method calls can be chained together * @see #setStripVersionsFromReferences(Boolean) * @see ParserOptions */ IParser setDontStripVersionsFromReferencesAtPaths(Collection thePaths); }