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Builds the hapi fhir base. Requires Common lang, commons-text, and guava be built first.
There is a newer version: 7.0.2-r12
/*
 * #%L
 * HAPI FHIR - Core Library
 * %%
 * Copyright (C) 2014 - 2024 Smile CDR, Inc.
 * %%
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 *
 * http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 * #L%
 */
package ca.uhn.fhir.parser;

import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.i18n.Msg;
import ca.uhn.fhir.rest.api.EncodingEnum;
import ca.uhn.fhir.util.BundleBuilder;
import ca.uhn.fhir.util.BundleUtil;
import org.hl7.fhir.instance.model.api.IBaseBundle;
import org.hl7.fhir.instance.model.api.IBaseResource;

import java.io.BufferedReader;
import java.io.IOException;
import java.io.Reader;
import java.io.Writer;
import java.util.List;

/**
 * This class is the FHIR NDJSON parser/encoder. Users should not interact with this class directly, but should use
 * {@link FhirContext#newNDJsonParser()} to get an instance.
 */
public class NDJsonParser extends BaseParser {

	private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(NDJsonParser.class);

	private IParser myJsonParser;
	private FhirContext myFhirContext;

	/**
	 * Do not use this constructor, the recommended way to obtain a new instance of the NDJSON parser is to invoke
	 * {@link FhirContext#newNDJsonParser()}.
	 *
	 * @param theParserErrorHandler
	 */
	public NDJsonParser(FhirContext theContext, IParserErrorHandler theParserErrorHandler) {
		super(theContext, theParserErrorHandler);
		myFhirContext = theContext;

		myJsonParser = theContext.newJsonParser();
	}

	@Override
	public IParser setPrettyPrint(boolean thePrettyPrint) {
		myJsonParser.setPrettyPrint(thePrettyPrint);
		return this;
	}

	@Override
	public EncodingEnum getEncoding() {
		return EncodingEnum.NDJSON;
	}

	@Override
	protected void doEncodeResourceToWriter(IBaseResource theResource, Writer theWriter, EncodeContext theEncodeContext)
			throws IOException {
		// We only encode bundles to NDJSON.
		if (!(IBaseBundle.class.isAssignableFrom(theResource.getClass()))) {
			throw new IllegalArgumentException(Msg.code(1833) + "NDJsonParser can only encode Bundle types.  Received "
					+ theResource.getClass().getName());
		}

		// Ok, convert the bundle to a list of resources.
		List theBundleResources = BundleUtil.toListOfResources(myFhirContext, (IBaseBundle) theResource);

		// Now we write each one in turn.
		// Use newline only as a line separator, not at the end of the file.
		boolean isFirstResource = true;
		for (IBaseResource theBundleEntryResource : theBundleResources) {
			if (!(isFirstResource)) {
				theWriter.write("\n");
			}
			isFirstResource = false;

			myJsonParser.encodeResourceToWriter(theBundleEntryResource, theWriter);
		}
	}

	@Override
	public  T doParseResource(Class theResourceType, Reader theReader)
			throws DataFormatException {
		// We can only parse to bundles.
		if ((theResourceType != null) && (!(IBaseBundle.class.isAssignableFrom(theResourceType)))) {
			throw new DataFormatException(Msg.code(1834) + "NDJsonParser can only parse to Bundle types.  Received "
					+ theResourceType.getName());
		}

		try {
			// Now we go through line-by-line parsing the JSON and then stuffing it into a bundle.
			BundleBuilder myBuilder = new BundleBuilder(myFhirContext);
			myBuilder.setType("collection");
			BufferedReader myBufferedReader = new BufferedReader(theReader);
			String jsonString = myBufferedReader.readLine();
			while (jsonString != null) {
				// And add it to a collection in a Bundle.
				// The string must be trimmed, as per the NDJson spec 3.2
				myBuilder.addCollectionEntry(myJsonParser.parseResource(jsonString.trim()));
				// Try to read another line.
				jsonString = myBufferedReader.readLine();
			}

			return (T) myBuilder.getBundle();
		} catch (IOException err) {
			throw new DataFormatException(Msg.code(1835) + err.getMessage());
		}
	}
}