org.hl7.fhir.utilities.NDJsonWriter Maven / Gradle / Ivy

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Builds the hapi fhir utilities. Requires the hapi-fhir-base be built first and be excluded from any other poms requiring it.
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package org.hl7.fhir.utilities;

/*
  Copyright (c) 2011+, HL7, Inc.
  All rights reserved.
  
  Redistribution and use in source and binary forms, with or without modification, 
  are permitted provided that the following conditions are met:
    
   * Redistributions of source code must retain the above copyright notice, this 
     list of conditions and the following disclaimer.
   * Redistributions in binary form must reproduce the above copyright notice, 
     this list of conditions and the following disclaimer in the documentation 
     and/or other materials provided with the distribution.
   * Neither the name of HL7 nor the names of its contributors may be used to 
     endorse or promote products derived from this software without specific 
     prior written permission.
  
  THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND 
  ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED 
  WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. 
  IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, 
  INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT 
  NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR 
  PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, 
  WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) 
  ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE 
  POSSIBILITY OF SUCH DAMAGE.
  
 */



import java.io.File;
import java.io.FileInputStream;
import java.io.FileNotFoundException;
import java.io.FileOutputStream;
import java.io.IOException;
import java.io.OutputStreamWriter;
import java.util.ArrayList;
import java.util.Collections;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;

import com.google.gson.Gson;
import com.google.gson.GsonBuilder;
import com.google.gson.JsonElement;
import com.google.gson.JsonObject;
import com.google.gson.JsonSyntaxException;

public class NDJsonWriter {

  private class ResourceInfo {
    private FileOutputStream stream;
    private Set ids = new HashSet();
    public OutputStreamWriter writer;
  }
  
  private static com.google.gson.JsonParser  parser = new com.google.gson.JsonParser();
  private Gson gson = new GsonBuilder().create();
  private Map outputs = new HashMap();
  private String filename;
  private String scratch;
  
  public NDJsonWriter(String filename, String scratch) {
    this.filename = filename;
    this.scratch = scratch;
    outputs.clear();
  }

  public void addFilesFiltered(String actualDir, String ext, String[] noExt) throws IOException {
    File f = new CSFile(actualDir);

    String files[] = f.list();
    for (int i = 0; i < files.length; i++) {
      if ( new CSFile(actualDir + files[i]).isFile() && ((ext == null || files[i].endsWith(ext)))) {
        boolean ok = true;
        for (String n : noExt) {
          ok = ok && !files[i].endsWith(n);
        }
        if (ok) {
          addFile(Utilities.path(actualDir, files[i]));
        }
      }
    }
  }

  private void addFile(String path) throws JsonSyntaxException, FileNotFoundException, IOException {
    JsonObject js = parser.parse(TextFile.fileToString(path)).getAsJsonObject();
    if (js.has("resourceType")) {
      addResource(js);  
    }
  }

  private void addResource(JsonObject js) throws IOException {
    String rn = js.get("resourceType").getAsString();    
    if (rn.equals("Bundle")) {
      if (js.has("entry")) {
        for (JsonElement item : js.getAsJsonArray("entry")) {
          if (item instanceof JsonObject && ((JsonObject) item).has("resource")) {
            JsonObject r = (JsonObject) ((JsonObject) item).get("resource");
            rn = r.get("resourceType").getAsString();
            addResource(r);  
          }
        }
      }
    } else {
      if (!js.has("id"))
        return;

      String id = js.get("id").getAsString();
      String json = gson.toJson(js);
      
      if (outputs.containsKey(rn)) { 
        ResourceInfo ri = outputs.get(rn);
        if (!ri.ids.contains(id)) {
          ri.ids.add(id);
          ri.writer.append("\r\n");      
          ri.writer.append(json);
        }
      } else {
        ResourceInfo ri = new ResourceInfo();
        outputs.put(rn, ri);
        ri.ids.add(id);
        ri.stream = new FileOutputStream(Utilities.path(scratch, rn+".ndjson"));
        ri.writer = new OutputStreamWriter(ri.stream, "UTF-8");
        ri.writer.append(json);      
      }
    }
  }

  public void close() throws IOException {
    ZipGenerator zip = new ZipGenerator(filename);
    for (String rn : sorted(outputs.keySet())) {
      ResourceInfo ri = outputs.get(rn);
      ri.writer.flush();
      ri.writer.close();
      ri.stream.close();
      
      zip.addStream(rn+".ndjson", new FileInputStream(Utilities.path(scratch, rn+".ndjson")), false);
    }
    zip.close();
  }

  private List sorted(Set keys) {
    List res = new ArrayList();
    res.addAll(keys);
    Collections.sort(res);
    return res;
  }

  public static void main(String[] args) throws IOException {
    String dstDir = "C:\\work\\org.hl7.fhir\\build\\publish\\";
    NDJsonWriter ndjson = new NDJsonWriter(dstDir + "examples-ndjson.zip", Utilities.path("[tmp]", "ndjson"));
    ndjson.addFilesFiltered(dstDir, ".json", new String[] {".schema.json", ".canonical.json", ".diff.json", "expansions.json", "package.json"});
    ndjson.close();
  }

}