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org.semanticweb.owlapi.manchestersyntax.renderer.ManchesterOWLSyntaxFrameRenderer Maven / Gradle / Ivy
/* This file is part of the OWL API.
* The contents of this file are subject to the LGPL License, Version 3.0.
* Copyright 2014, The University of Manchester
*
* This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
* This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
* You should have received a copy of the GNU General Public License along with this program. If not, see http://www.gnu.org/licenses/.
*
* Alternatively, the contents of this file may be used under the terms of the Apache License, Version 2.0 in which case, the provisions of the Apache License Version 2.0 are applicable instead of those above.
* Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at
* http://www.apache.org/licenses/LICENSE-2.0
* Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. */
package org.semanticweb.owlapi.manchestersyntax.renderer;
import static org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntax.ANNOTATIONS;
import static org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntax.ANNOTATION_PROPERTY;
import static org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntax.ASYMMETRIC;
import static org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntax.CHARACTERISTICS;
import static org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntax.CLASS;
import static org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntax.DATATYPE;
import static org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntax.DATA_PROPERTY;
import static org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntax.DIFFERENT_FROM;
import static org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntax.DIFFERENT_INDIVIDUALS;
import static org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntax.DISJOINT_CLASSES;
import static org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntax.DISJOINT_PROPERTIES;
import static org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntax.DISJOINT_UNION_OF;
import static org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntax.DISJOINT_WITH;
import static org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntax.DOMAIN;
import static org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntax.EQUIVALENT_CLASSES;
import static org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntax.EQUIVALENT_PROPERTIES;
import static org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntax.EQUIVALENT_TO;
import static org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntax.FACTS;
import static org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntax.FUNCTIONAL;
import static org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntax.HAS_KEY;
import static org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntax.IMPORT;
import static org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntax.INDIVIDUAL;
import static org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntax.INDIVIDUALS;
import static org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntax.INVERSE_FUNCTIONAL;
import static org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntax.INVERSE_OF;
import static org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntax.IRREFLEXIVE;
import static org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntax.NOT;
import static org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntax.OBJECT_PROPERTY;
import static org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntax.ONTOLOGY;
import static org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntax.PREFIX;
import static org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntax.RANGE;
import static org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntax.REFLEXIVE;
import static org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntax.RULE;
import static org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntax.SAME_AS;
import static org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntax.SAME_INDIVIDUAL;
import static org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntax.SUBCLASS_OF;
import static org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntax.SUB_PROPERTY_CHAIN;
import static org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntax.SUB_PROPERTY_OF;
import static org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntax.SUPERCLASS_OF;
import static org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntax.SUPER_PROPERTY_OF;
import static org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntax.SYMMETRIC;
import static org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntax.TRANSITIVE;
import static org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntax.TYPES;
import static org.semanticweb.owlapi.model.parameters.Imports.EXCLUDED;
import java.io.Writer;
import java.util.ArrayList;
import java.util.Collection;
import java.util.Collections;
import java.util.Iterator;
import java.util.LinkedHashMap;
import java.util.LinkedHashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;
import java.util.TreeMap;
import java.util.TreeSet;
import javax.annotation.Nonnull;
import javax.annotation.Nullable;
import org.semanticweb.owlapi.io.OWLRendererException;
import org.semanticweb.owlapi.manchestersyntax.parser.ManchesterOWLSyntax;
import org.semanticweb.owlapi.model.AxiomType;
import org.semanticweb.owlapi.model.IRI;
import org.semanticweb.owlapi.model.OWLAnnotation;
import org.semanticweb.owlapi.model.OWLAnnotationAssertionAxiom;
import org.semanticweb.owlapi.model.OWLAnnotationProperty;
import org.semanticweb.owlapi.model.OWLAnnotationPropertyDomainAxiom;
import org.semanticweb.owlapi.model.OWLAnnotationPropertyRangeAxiom;
import org.semanticweb.owlapi.model.OWLAnnotationSubject;
import org.semanticweb.owlapi.model.OWLAnonymousIndividual;
import org.semanticweb.owlapi.model.OWLAxiom;
import org.semanticweb.owlapi.model.OWLClass;
import org.semanticweb.owlapi.model.OWLClassAssertionAxiom;
import org.semanticweb.owlapi.model.OWLClassExpression;
import org.semanticweb.owlapi.model.OWLDataProperty;
import org.semanticweb.owlapi.model.OWLDataPropertyDomainAxiom;
import org.semanticweb.owlapi.model.OWLDataPropertyRangeAxiom;
import org.semanticweb.owlapi.model.OWLDataRange;
import org.semanticweb.owlapi.model.OWLDatatype;
import org.semanticweb.owlapi.model.OWLDatatypeDefinitionAxiom;
import org.semanticweb.owlapi.model.OWLDifferentIndividualsAxiom;
import org.semanticweb.owlapi.model.OWLDisjointClassesAxiom;
import org.semanticweb.owlapi.model.OWLDisjointDataPropertiesAxiom;
import org.semanticweb.owlapi.model.OWLDisjointObjectPropertiesAxiom;
import org.semanticweb.owlapi.model.OWLDisjointUnionAxiom;
import org.semanticweb.owlapi.model.OWLEntity;
import org.semanticweb.owlapi.model.OWLEntityVisitor;
import org.semanticweb.owlapi.model.OWLEquivalentClassesAxiom;
import org.semanticweb.owlapi.model.OWLEquivalentDataPropertiesAxiom;
import org.semanticweb.owlapi.model.OWLEquivalentObjectPropertiesAxiom;
import org.semanticweb.owlapi.model.OWLFunctionalObjectPropertyAxiom;
import org.semanticweb.owlapi.model.OWLHasKeyAxiom;
import org.semanticweb.owlapi.model.OWLIndividual;
import org.semanticweb.owlapi.model.OWLInverseObjectPropertiesAxiom;
import org.semanticweb.owlapi.model.OWLNamedIndividual;
import org.semanticweb.owlapi.model.OWLNegativeDataPropertyAssertionAxiom;
import org.semanticweb.owlapi.model.OWLNegativeObjectPropertyAssertionAxiom;
import org.semanticweb.owlapi.model.OWLObject;
import org.semanticweb.owlapi.model.OWLObjectProperty;
import org.semanticweb.owlapi.model.OWLObjectPropertyDomainAxiom;
import org.semanticweb.owlapi.model.OWLObjectPropertyExpression;
import org.semanticweb.owlapi.model.OWLObjectPropertyRangeAxiom;
import org.semanticweb.owlapi.model.OWLOntology;
import org.semanticweb.owlapi.model.OWLPropertyAssertionAxiom;
import org.semanticweb.owlapi.model.OWLRuntimeException;
import org.semanticweb.owlapi.model.OWLSameIndividualAxiom;
import org.semanticweb.owlapi.model.OWLSubAnnotationPropertyOfAxiom;
import org.semanticweb.owlapi.model.OWLSubClassOfAxiom;
import org.semanticweb.owlapi.model.OWLSubDataPropertyOfAxiom;
import org.semanticweb.owlapi.model.OWLSubObjectPropertyOfAxiom;
import org.semanticweb.owlapi.model.OWLSubPropertyChainOfAxiom;
import org.semanticweb.owlapi.model.SWRLAtom;
import org.semanticweb.owlapi.model.SWRLRule;
import org.semanticweb.owlapi.util.CollectionFactory;
import org.semanticweb.owlapi.util.OWLAxiomFilter;
import org.semanticweb.owlapi.util.OWLObjectComparator;
import org.semanticweb.owlapi.util.OntologyIRIShortFormProvider;
import org.semanticweb.owlapi.util.ShortFormProvider;
/**
* The Class ManchesterOWLSyntaxFrameRenderer.
*
* @author Matthew Horridge, The University Of Manchester, Bio-Health Informatics Group
* @since 2.0.0
*/
public class ManchesterOWLSyntaxFrameRenderer extends ManchesterOWLSyntaxObjectRenderer
implements OWLEntityVisitor {
class SectionMap {
@Nonnull
private final Map> object2Axioms = new LinkedHashMap<>();
/**
* @return true if empty
*/
public boolean isNotEmpty() {
return !object2Axioms.isEmpty();
}
/**
* @param o key
* @param forAxiom axiom to add
*/
public void put(O o, V forAxiom) {
Collection axioms = object2Axioms.get(o);
if (axioms == null) {
axioms = sortedCollection();
object2Axioms.put(o, axioms);
}
axioms.add(forAxiom);
}
/**
* @param o object to remove
*/
public void remove(O o) {
object2Axioms.remove(o);
}
/**
* @return sections
*/
@Nonnull
public Collection getSectionObjects() {
return object2Axioms.keySet();
}
/**
* @param sectionObject sectionObject
* @return annotations for objects
*/
@Nonnull
public Collection> getAnnotationsForSectionObject(
Object sectionObject) {
Collection axioms = object2Axioms.get(sectionObject);
if (axioms == null) {
return sortedSet();
}
Collection> annos = new ArrayList<>();
for (OWLAxiom ax : axioms) {
annos.add(sortedCollection(ax.getAnnotations()));
}
return annos;
}
}
/** The ontologies. */
private final Set ontologies;
/** The short form provider. */
private OntologyIRIShortFormProvider shortFormProvider = new OntologyIRIShortFormProvider();
/** The filtered axiom types. */
@Nonnull
private final Set filteredAxiomTypes = filtered();
private static Set filtered() {
return Collections.singleton((AxiomType) AxiomType.SWRL_RULE);
}
/** The render extensions. */
private boolean renderExtensions = false;
private boolean explicitXsdStrings;
/** The listeners. */
@Nonnull
private final List listeners = new ArrayList<>();
/** The axiom filter. */
private OWLAxiomFilter axiomFilter = axiom -> true;
/** The rendering director. */
private RenderingDirector renderingDirector = new DefaultRenderingDirector();
@Nonnull
private final OWLObjectComparator owlObjectComparator;
/**
* Instantiates a new manchester owl syntax frame renderer.
*
* @param ontology the ontology
* @param writer the writer
* @param entityShortFormProvider the entity short form provider
*/
public ManchesterOWLSyntaxFrameRenderer(@Nonnull OWLOntology ontology, @Nonnull Writer writer,
@Nonnull ShortFormProvider entityShortFormProvider) {
this(ontology, false, writer, entityShortFormProvider);
}
/**
* Instantiates a new manchester owl syntax frame renderer.
*
* @param ontology the ontology
* @param explicitXsdString true if {@code xsd:string} datatype should be explicit in the output
* @param writer the writer
* @param entityShortFormProvider the entity short form provider
*/
public ManchesterOWLSyntaxFrameRenderer(@Nonnull OWLOntology ontology,
boolean explicitXsdString, @Nonnull Writer writer,
@Nonnull ShortFormProvider entityShortFormProvider) {
this(CollectionFactory.createSet(ontology), explicitXsdString, writer,
entityShortFormProvider);
}
/**
* Instantiates a new manchester owl syntax frame renderer.
*
* @param ontologies the ontologies
* @param writer the writer
* @param entityShortFormProvider the entity short form provider
*/
public ManchesterOWLSyntaxFrameRenderer(@Nonnull Set ontologies, Writer writer,
@Nonnull ShortFormProvider entityShortFormProvider) {
this(ontologies, false, writer, entityShortFormProvider);
}
/**
* Instantiates a new manchester owl syntax frame renderer.
*
* @param ontologies the ontologies
* @param writer the writer
* @param explicitXsdString true if {@code xsd:string} datatype should be explicit in the output
* @param entityShortFormProvider the entity short form provider
*/
public ManchesterOWLSyntaxFrameRenderer(@Nonnull Set ontologies,
boolean explicitXsdString, Writer writer,
@Nonnull ShortFormProvider entityShortFormProvider) {
super(writer, explicitXsdString, entityShortFormProvider);
this.ontologies = new LinkedHashSet<>(ontologies);
owlObjectComparator = new OWLObjectComparator(entityShortFormProvider);
}
/**
* Sets the rendering director.
*
* @param renderingDirector the new rendering director
*/
public void setRenderingDirector(RenderingDirector renderingDirector) {
this.renderingDirector = renderingDirector;
}
/**
* @param shortFormProvider short form provider to be used
*/
public void setOntologyIRIShortFormProvider(OntologyIRIShortFormProvider shortFormProvider) {
this.shortFormProvider = shortFormProvider;
}
/**
* Adds the renderer listener.
*
* @param listener the listener
*/
public void addRendererListener(RendererListener listener) {
listeners.add(listener);
}
/**
* Removes the renderer listener.
*
* @param listener the listener
*/
public void removeRendererListener(RendererListener listener) {
listeners.remove(listener);
}
/**
* Sets the axiom filter.
*
* @param axiomFilter the new axiom filter
*/
public void setAxiomFilter(OWLAxiomFilter axiomFilter) {
this.axiomFilter = axiomFilter;
}
/** Clear filtered axiom types. */
public void clearFilteredAxiomTypes() {
filteredAxiomTypes.clear();
}
/**
* Adds the filtered axiom type.
*
* @param axiomType the axiom type
*/
public void addFilteredAxiomType(AxiomType axiomType) {
filteredAxiomTypes.add(axiomType);
}
/**
* Sets the render extensions.
*
* @param renderExtensions the new render extensions
*/
public void setRenderExtensions(boolean renderExtensions) {
this.renderExtensions = renderExtensions;
}
/**
* Write ontology.
*
* @throws OWLRendererException the OWL renderer exception
*/
public void writeOntology() throws OWLRendererException {
if (ontologies.size() != 1) {
throw new OWLRuntimeException("Can only render one ontology");
}
OWLOntology ontology = ontologies.iterator().next();
assert ontology != null;
writePrefixMap();
writeNewLine();
writeOntologyHeader(ontology);
for (OWLAnnotationProperty prop : sortedCollection(
ontology.getAnnotationPropertiesInSignature())) {
assert prop != null;
write(prop);
}
for (OWLDatatype datatype : sortedCollection(ontology.getDatatypesInSignature())) {
assert datatype != null;
write(datatype);
}
for (OWLObjectProperty prop : sortedCollection(ontology.getObjectPropertiesInSignature())) {
assert prop != null;
write(prop);
OWLObjectPropertyExpression invProp = prop.getInverseProperty();
if (!ontology.getAxioms(invProp, EXCLUDED).isEmpty()) {
write(invProp);
}
}
for (OWLDataProperty prop : sortedCollection(ontology.getDataPropertiesInSignature())) {
assert prop != null;
write(prop);
}
for (OWLClass cls : sortedCollection(ontology.getClassesInSignature())) {
assert cls != null;
write(cls);
}
for (OWLNamedIndividual ind : sortedCollection(ontology.getIndividualsInSignature())) {
assert ind != null;
write(ind);
}
for (OWLAnonymousIndividual ind : sortedCollection(
ontology.getReferencedAnonymousIndividuals(EXCLUDED))) {
assert ind != null;
write(ind);
}
// Nary disjoint classes axioms
event = new RendererEvent(this, ontology);
for (OWLDisjointClassesAxiom ax : sortedCollection(
ontology.getAxioms(AxiomType.DISJOINT_CLASSES))) {
if (ax.getClassExpressions().size() > 2) {
SectionMap map = new SectionMap<>();
map.put(ax.getClassExpressions(), ax);
writeSection(DISJOINT_CLASSES, map, ",", false, ontology);
}
}
// Nary equivalent classes axioms
for (OWLEquivalentClassesAxiom ax : sortedCollection(
ontology.getAxioms(AxiomType.EQUIVALENT_CLASSES))) {
if (ax.getClassExpressions().size() > 2) {
SectionMap map = new SectionMap<>();
map.put(ax.getClassExpressions(), ax);
writeSection(EQUIVALENT_CLASSES, map, ",", false, ontology);
}
}
// Nary disjoint properties
for (OWLDisjointObjectPropertiesAxiom ax : sortedCollection(
ontology.getAxioms(AxiomType.DISJOINT_OBJECT_PROPERTIES))) {
if (ax.getProperties().size() > 2) {
SectionMap map = new SectionMap<>();
map.put(ax.getProperties(), ax);
writeSection(DISJOINT_PROPERTIES, map, ",", false, ontology);
}
}
// Nary equivalent properties
for (OWLEquivalentObjectPropertiesAxiom ax : sortedCollection(
ontology.getAxioms(AxiomType.EQUIVALENT_OBJECT_PROPERTIES))) {
if (ax.getProperties().size() > 2) {
SectionMap map = new SectionMap<>();
map.put(ax.getProperties(), ax);
writeSection(EQUIVALENT_PROPERTIES, map, ",", false, ontology);
}
}
// Nary disjoint properties
for (OWLDisjointDataPropertiesAxiom ax : sortedCollection(
ontology.getAxioms(AxiomType.DISJOINT_DATA_PROPERTIES))) {
if (ax.getProperties().size() > 2) {
SectionMap map = new SectionMap<>();
map.put(ax.getProperties(), ax);
writeSection(DISJOINT_PROPERTIES, map, ",", false, ontology);
}
}
// Nary equivalent properties
for (OWLEquivalentDataPropertiesAxiom ax : sortedCollection(
ontology.getAxioms(AxiomType.EQUIVALENT_DATA_PROPERTIES))) {
if (ax.getProperties().size() > 2) {
SectionMap map = new SectionMap<>();
map.put(ax.getProperties(), ax);
writeSection(EQUIVALENT_PROPERTIES, map, ",", false, ontology);
}
}
// Nary different individuals
for (OWLDifferentIndividualsAxiom ax : sortedCollection(
ontology.getAxioms(AxiomType.DIFFERENT_INDIVIDUALS))) {
if (ax.getIndividuals().size() > 2
|| ax.getIndividuals().size() == 2 && !ax.getAnnotations().isEmpty()) {
SectionMap map = new SectionMap<>();
map.put(ax.getIndividuals(), ax);
writeSection(DIFFERENT_INDIVIDUALS, map, ",", false, ontology);
}
}
// Nary same individuals
for (OWLSameIndividualAxiom ax : sortedCollection(
ontology.getAxioms(AxiomType.SAME_INDIVIDUAL))) {
if (ax.getIndividuals().size() > 2
|| ax.getIndividuals().size() == 2 && !ax.getAnnotations().isEmpty()) {
SectionMap map = new SectionMap<>();
map.put(ax.getIndividuals(), ax);
writeSection(SAME_INDIVIDUAL, map, ",", false, ontology);
}
}
for (SWRLRule rule : sortedCollection(ontology.getAxioms(AxiomType.SWRL_RULE))) {
@Nonnull
Set singleton = Collections.singleton(rule);
writeSection(RULE, singleton, ", ", false);
}
flush();
}
/**
* Write ontology header.
*
* @param ontology the ontology
*/
public void writeOntologyHeader(@Nonnull OWLOntology ontology) {
event = new RendererEvent(this, ontology);
fireFrameRenderingPrepared(ONTOLOGY.toString());
write(ONTOLOGY.toString());
write(":");
writeSpace();
if (!ontology.isAnonymous()) {
int indent = getIndent();
writeFullURI(ontology.getOntologyID().getOntologyIRI().get().toString());
writeNewLine();
pushTab(indent);
if (ontology.getOntologyID().getVersionIRI().isPresent()) {
writeFullURI(ontology.getOntologyID().getVersionIRI().get().toString());
}
popTab();
}
fireFrameRenderingStarted(ONTOLOGY.toString());
writeNewLine();
ontology.getImportsDeclarations().stream().sorted().forEach(decl -> {
fireSectionItemPrepared(IMPORT.toString());
write(IMPORT.toString());
write(":");
writeSpace();
fireSectionRenderingStarted(IMPORT.toString());
writeFullURI(decl.getIRI().toString());
writeNewLine();
fireSectionRenderingFinished(IMPORT.toString());
});
writeNewLine();
writeSection(ANNOTATIONS, sortedCollection(ontology.getAnnotations()), ",", true);
fireFrameRenderingFinished(ONTOLOGY.toString());
}
/** Write prefix map. */
public void writePrefixMap() {
ShortFormProvider sfp = getShortFormProvider();
if (!(sfp instanceof ManchesterOWLSyntaxPrefixNameShortFormProvider)) {
return;
}
ManchesterOWLSyntaxPrefixNameShortFormProvider prov =
(ManchesterOWLSyntaxPrefixNameShortFormProvider) sfp;
Map prefixMap = prov.getPrefixName2PrefixMap();
for (Map.Entry e : new TreeMap<>(prefixMap).entrySet()) {
write(PREFIX.toString());
write(": ");
write(e.getKey());
write(" ");
writeFullURI(e.getValue());
writeNewLine();
}
if (!prefixMap.containsKey(":")) {
write(PREFIX.toString());
write(": : ");
OWLOntology o = ontologies.iterator().next();
if (o.getOntologyID().getOntologyIRI().isPresent()) {
writeFullURI(o.getOntologyID().getOntologyIRI().get().toString());
} else if (o.getOntologyID().getDefaultDocumentIRI().isPresent()) {
writeFullURI(o.getOntologyID().getDefaultDocumentIRI().get().toString());
} else {
writeFullURI("urn:absoluteiri:defaultvalue#");
}
writeNewLine();
}
if (!prefixMap.isEmpty()) {
writeNewLine();
writeNewLine();
}
}
/**
* Write full URI.
*
* @param uri the URI
*/
public void writeFullURI(String uri) {
write("<");
write(uri);
write(">");
}
/**
* Checks if is filtered.
*
* @param axiomType the axiom type
* @return true, if is filtered
*/
public boolean isFiltered(AxiomType axiomType) {
return filteredAxiomTypes.contains(axiomType);
}
/**
* Checks if is displayed.
*
* @param axiom the axiom
* @return true, if is displayed
*/
public boolean isDisplayed(@Nullable OWLAxiom axiom) {
if (axiom == null) {
return false;
}
return axiomFilter.passes(axiom);
}
/**
* Write frame.
*
* @param entity the entity
* @return the sets the
*/
public Collection writeFrame(@Nonnull OWLEntity entity) {
if (entity.isOWLClass()) {
return write(entity.asOWLClass());
}
if (entity.isOWLObjectProperty()) {
return write(entity.asOWLObjectProperty());
}
if (entity.isOWLDataProperty()) {
return write(entity.asOWLDataProperty());
}
if (entity.isOWLNamedIndividual()) {
return write(entity.asOWLNamedIndividual());
}
if (entity.isOWLAnnotationProperty()) {
return write(entity.asOWLAnnotationProperty());
}
if (entity.isOWLDatatype()) {
return write(entity.asOWLDatatype());
}
return CollectionFactory.emptySet();
}
/**
* @param cls the class
* @return the sets the
*/
@Nonnull
public Collection write(@Nonnull OWLClass cls) {
List axioms = new ArrayList<>();
axioms.addAll(writeEntityStart(CLASS, cls));
if (!isFiltered(AxiomType.EQUIVALENT_CLASSES)) {
for (OWLOntology ontology : ontologies) {
SectionMap equivalentClasses = new SectionMap<>();
for (OWLEquivalentClassesAxiom ax : sortedCollection(
ontology.getEquivalentClassesAxioms(cls))) {
if (ax.getClassExpressions().size() == 2 && isDisplayed(ax)) {
for (OWLClassExpression equivCls : sortedCollection(
ax.getClassExpressionsMinus(cls))) {
equivalentClasses.put(equivCls, ax);
}
axioms.add(ax);
}
}
equivalentClasses.remove(cls);
writeSection(EQUIVALENT_TO, equivalentClasses, ",", true, ontology);
}
}
if (!isFiltered(AxiomType.SUBCLASS_OF)) {
for (OWLOntology ontology : ontologies) {
SectionMap superclasses = new SectionMap<>();
for (OWLSubClassOfAxiom ax : sortedCollection(
ontology.getSubClassAxiomsForSubClass(cls))) {
if (isDisplayed(ax)) {
superclasses.put(ax.getSuperClass(), ax);
axioms.add(ax);
}
}
writeSection(SUBCLASS_OF, superclasses, ",", true, ontology);
}
if (renderExtensions) {
for (OWLOntology ont : ontologies) {
SectionMap subClasses = new SectionMap<>();
for (OWLSubClassOfAxiom ax : sortedCollection(
ont.getSubClassAxiomsForSuperClass(cls))) {
if (isDisplayed(ax)) {
subClasses.put(ax.getSubClass(), ax);
axioms.add(ax);
}
}
writeSection(SUPERCLASS_OF, subClasses, ",", true, ont);
}
}
}
if (!isFiltered(AxiomType.DISJOINT_UNION)) {
for (OWLOntology ontology : ontologies) {
// Handling of nary in frame style
for (OWLDisjointUnionAxiom ax : sortedCollection(
ontology.getDisjointUnionAxioms(cls))) {
if (isDisplayed(ax)) {
Collection allDisjointClasses =
sortedCollection(ax.getClassExpressions());
axioms.add(ax);
writeSection(DISJOINT_UNION_OF, allDisjointClasses, ", ", false, ontology);
}
}
}
}
if (!isFiltered(AxiomType.DISJOINT_CLASSES)) {
for (OWLOntology ontology : ontologies) {
SectionMap disjointClasses = new SectionMap<>();
for (OWLDisjointClassesAxiom ax : sortedCollection(
ontology.getDisjointClassesAxioms(cls))) {
if (isDisplayed(ax)) {
if (ax.getClassExpressions().size() == 2) {
OWLClassExpression disjointWith =
sortedCollection(ax.getClassExpressionsMinus(cls)).iterator()
.next();
disjointClasses.put(disjointWith, ax);
}
axioms.add(ax);
}
}
writeSection(DISJOINT_WITH, disjointClasses, ", ", false, ontology);
if (renderExtensions) {
// Handling of nary in frame style
for (OWLDisjointClassesAxiom ax : sortedCollection(
ontology.getDisjointClassesAxioms(cls))) {
if (isDisplayed(ax) && ax.getClassExpressions().size() > 2) {
Collection allDisjointClasses =
sortedCollection(ax.getClassExpressions());
axioms.add(ax);
writeSection(DISJOINT_CLASSES, allDisjointClasses, ", ", false,
ontology);
}
}
}
}
}
if (!isFiltered(AxiomType.HAS_KEY)) {
for (OWLOntology ontology : ontologies) {
for (OWLHasKeyAxiom ax : sortedCollection(ontology.getHasKeyAxioms(cls))) {
if (isDisplayed(ax)) {
SectionMap map = new SectionMap<>();
map.put(ax.getPropertyExpressions(), ax);
writeSection(HAS_KEY, map, ", ", true, ontology);
}
}
}
}
if (!isFiltered(AxiomType.CLASS_ASSERTION)) {
for (OWLOntology ontology : ontologies) {
SectionMap individuals = new SectionMap<>();
for (OWLClassAssertionAxiom ax : sortedCollection(
ontology.getClassAssertionAxioms(cls))) {
if (isDisplayed(ax) && renderExtensions) {
individuals.put(ax.getIndividual(), ax);
axioms.add(ax);
}
}
writeSection(INDIVIDUALS, individuals, ",", true, ontology);
}
}
if (!isFiltered(AxiomType.SWRL_RULE)) {
for (OWLOntology ontology : ontologies) {
Collection rules = sortedCollection();
for (SWRLRule rule : sortedCollection(ontology.getAxioms(AxiomType.SWRL_RULE))) {
if (isDisplayed(rule)) {
for (SWRLAtom atom : rule.getHead()) {
if (atom.getPredicate().equals(cls)) {
writeSection(RULE, rules, ", ", true, ontology);
break;
}
}
}
}
}
}
writeEntitySectionEnd(CLASS.toString());
return axioms;
}
/**
* Write entity section end.
*
* @param type the type
*/
protected void writeEntitySectionEnd(String type) {
fireFrameRenderingFinished(type);
popTab();
writeNewLine();
}
/**
* @param property the property
* @return the sets the
*/
@Nonnull
public Collection write(@Nonnull OWLObjectPropertyExpression property) {
List axioms = new ArrayList<>();
axioms.addAll(writeEntityStart(OBJECT_PROPERTY, property));
if (!isFiltered(AxiomType.SUB_OBJECT_PROPERTY)) {
for (OWLOntology ontology : ontologies) {
SectionMap properties = new SectionMap<>();
for (OWLSubObjectPropertyOfAxiom ax : sortedCollection(
ontology.getObjectSubPropertyAxiomsForSubProperty(property))) {
if (isDisplayed(ax)) {
properties.put(ax.getSuperProperty(), ax);
axioms.add(ax);
}
}
writeSection(SUB_PROPERTY_OF, properties, ",", true, ontology);
}
if (renderExtensions) {
for (OWLOntology ontology : ontologies) {
SectionMap properties = new SectionMap<>();
for (OWLSubObjectPropertyOfAxiom ax : sortedCollection(
ontology.getObjectSubPropertyAxiomsForSuperProperty(property))) {
if (isDisplayed(ax)) {
properties.put(ax.getSubProperty(), ax);
axioms.add(ax);
}
}
writeSection(SUPER_PROPERTY_OF, properties, ",", true, ontology);
}
}
}
if (!isFiltered(AxiomType.EQUIVALENT_OBJECT_PROPERTIES)) {
for (OWLOntology ontology : ontologies) {
SectionMap properties = new SectionMap<>();
for (OWLEquivalentObjectPropertiesAxiom ax : sortedCollection(
ontology.getEquivalentObjectPropertiesAxioms(property))) {
if (isDisplayed(ax) && ax.getProperties().size() == 2) {
Collection props =
sortedCollection(ax.getPropertiesMinus(property));
properties.put(props.iterator().next(), ax);
axioms.add(ax);
}
}
writeSection(EQUIVALENT_TO, properties, ",", true, ontology);
}
}
if (!isFiltered(AxiomType.DISJOINT_OBJECT_PROPERTIES)) {
for (OWLOntology ontology : ontologies) {
SectionMap properties = new SectionMap<>();
for (OWLDisjointObjectPropertiesAxiom ax : sortedCollection(
ontology.getDisjointObjectPropertiesAxioms(property))) {
if (ax.getProperties().size() == 2 && isDisplayed(ax)) {
Collection props =
sortedCollection(ax.getPropertiesMinus(property));
properties.put(props.iterator().next(), ax);
axioms.add(ax);
}
}
writeSection(DISJOINT_WITH, properties, ",", true, ontology);
}
}
if (!isFiltered(AxiomType.SUB_PROPERTY_CHAIN_OF)) {
for (OWLOntology ontology : ontologies) {
for (OWLSubPropertyChainOfAxiom ax : sortedCollection(
ontology.getAxioms(AxiomType.SUB_PROPERTY_CHAIN_OF))) {
if (ax.getSuperProperty().equals(property) && isDisplayed(ax)) {
SectionMap map = new SectionMap<>();
map.put(ax.getPropertyChain(), ax);
writeSection(SUB_PROPERTY_CHAIN, map, " o ", false, ontology);
axioms.add(ax);
}
}
}
}
for (OWLOntology ontology : ontologies) {
SectionMap characteristics = new SectionMap<>();
if (!isFiltered(AxiomType.FUNCTIONAL_OBJECT_PROPERTY)) {
for (OWLFunctionalObjectPropertyAxiom ax : sortedCollection(
ontology.getFunctionalObjectPropertyAxioms(property))) {
if (isDisplayed(ax)) {
characteristics.put(FUNCTIONAL.toString(), ax);
axioms.add(ax);
}
}
}
if (!isFiltered(AxiomType.INVERSE_FUNCTIONAL_OBJECT_PROPERTY)) {
for (OWLAxiom ax : sortedCollection(
ontology.getInverseFunctionalObjectPropertyAxioms(property))) {
if (isDisplayed(ax)) {
characteristics.put(INVERSE_FUNCTIONAL.toString(), ax);
axioms.add(ax);
}
}
}
if (!isFiltered(AxiomType.SYMMETRIC_OBJECT_PROPERTY)) {
for (OWLAxiom ax : sortedCollection(
ontology.getSymmetricObjectPropertyAxioms(property))) {
if (isDisplayed(ax)) {
characteristics.put(SYMMETRIC.toString(), ax);
axioms.add(ax);
}
}
}
if (!isFiltered(AxiomType.TRANSITIVE_OBJECT_PROPERTY)) {
for (OWLAxiom ax : sortedCollection(
ontology.getTransitiveObjectPropertyAxioms(property))) {
if (isDisplayed(ax)) {
characteristics.put(TRANSITIVE.toString(), ax);
axioms.add(ax);
}
}
}
if (!isFiltered(AxiomType.REFLEXIVE_OBJECT_PROPERTY)) {
for (OWLAxiom ax : sortedCollection(
ontology.getReflexiveObjectPropertyAxioms(property))) {
if (isDisplayed(ax)) {
characteristics.put(REFLEXIVE.toString(), ax);
axioms.add(ax);
}
}
}
if (!isFiltered(AxiomType.IRREFLEXIVE_OBJECT_PROPERTY)) {
for (OWLAxiom ax : sortedCollection(
ontology.getIrreflexiveObjectPropertyAxioms(property))) {
if (isDisplayed(ax)) {
characteristics.put(IRREFLEXIVE.toString(), ax);
axioms.add(ax);
}
}
}
if (!isFiltered(AxiomType.ASYMMETRIC_OBJECT_PROPERTY)) {
for (OWLAxiom ax : sortedCollection(
ontology.getAsymmetricObjectPropertyAxioms(property))) {
if (isDisplayed(ax)) {
characteristics.put(ASYMMETRIC.toString(), ax);
axioms.add(ax);
}
}
}
writeSection(CHARACTERISTICS, characteristics, ",", true, ontology);
}
if (!isFiltered(AxiomType.OBJECT_PROPERTY_DOMAIN)) {
for (OWLOntology ontology : ontologies) {
SectionMap expressions = new SectionMap<>();
for (OWLObjectPropertyDomainAxiom ax : sortedCollection(
ontology.getObjectPropertyDomainAxioms(property))) {
if (isDisplayed(ax)) {
expressions.put(ax.getDomain(), ax);
axioms.add(ax);
}
}
writeSection(DOMAIN, expressions, ",", true, ontology);
}
}
if (!isFiltered(AxiomType.OBJECT_PROPERTY_RANGE)) {
for (OWLOntology ontology : ontologies) {
SectionMap expressions = new SectionMap<>();
for (OWLObjectPropertyRangeAxiom ax : sortedCollection(
ontology.getObjectPropertyRangeAxioms(property))) {
if (isDisplayed(ax)) {
expressions.put(ax.getRange(), ax);
axioms.add(ax);
}
}
writeSection(RANGE, expressions, ",", true, ontology);
}
}
if (!isFiltered(AxiomType.INVERSE_OBJECT_PROPERTIES)) {
for (OWLOntology ontology : ontologies) {
Collection properties = sortedCollection();
for (OWLInverseObjectPropertiesAxiom ax : sortedCollection(
ontology.getInverseObjectPropertyAxioms(property))) {
if (isDisplayed(ax)) {
if (ax.getFirstProperty().equals(property)) {
properties.add(ax.getSecondProperty());
} else {
properties.add(ax.getFirstProperty());
}
axioms.add(ax);
}
}
writeSection(INVERSE_OF, properties, ",", true, ontology);
}
}
if (!isFiltered(AxiomType.SWRL_RULE)) {
for (OWLOntology ontology : ontologies) {
Collection rules = sortedCollection();
for (SWRLRule rule : sortedCollection(ontology.getAxioms(AxiomType.SWRL_RULE))) {
if (isDisplayed(rule)) {
for (SWRLAtom atom : rule.getHead()) {
if (atom.getPredicate().equals(property)) {
rules.add(rule);
writeSection(RULE, rules, ",", true, ontology);
break;
}
}
}
}
}
}
writeEntitySectionEnd(OBJECT_PROPERTY.toString());
return axioms;
}
/**
* @param property the property
* @return the sets the
*/
@Nonnull
public Collection write(@Nonnull OWLDataProperty property) {
List axioms = new ArrayList<>();
axioms.addAll(writeEntityStart(DATA_PROPERTY, property));
if (!isFiltered(AxiomType.FUNCTIONAL_DATA_PROPERTY)) {
for (OWLOntology ontology : ontologies) {
SectionMap characteristics = new SectionMap<>();
for (OWLAxiom ax : sortedCollection(
ontology.getFunctionalDataPropertyAxioms(property))) {
if (isDisplayed(ax)) {
characteristics.put(FUNCTIONAL.toString(), ax);
axioms.add(ax);
}
}
writeSection(CHARACTERISTICS, characteristics, ",", true, ontology);
}
}
if (!isFiltered(AxiomType.DATA_PROPERTY_DOMAIN)) {
for (OWLOntology ontology : ontologies) {
SectionMap domains = new SectionMap<>();
for (OWLDataPropertyDomainAxiom ax : sortedCollection(
ontology.getDataPropertyDomainAxioms(property))) {
if (isDisplayed(ax)) {
domains.put(ax.getDomain(), ax);
axioms.add(ax);
}
}
writeSection(DOMAIN, domains, ",", true, ontology);
}
}
if (!isFiltered(AxiomType.DATA_PROPERTY_RANGE)) {
for (OWLOntology ontology : ontologies) {
SectionMap ranges = new SectionMap<>();
for (OWLDataPropertyRangeAxiom ax : sortedCollection(
ontology.getDataPropertyRangeAxioms(property))) {
if (isDisplayed(ax)) {
ranges.put(ax.getRange(), ax);
axioms.add(ax);
}
}
writeSection(RANGE, ranges, ",", true, ontology);
}
}
if (!isFiltered(AxiomType.SUB_DATA_PROPERTY)) {
for (OWLOntology ontology : ontologies) {
SectionMap supers = new SectionMap<>();
for (OWLSubDataPropertyOfAxiom ax : sortedCollection(
ontology.getDataSubPropertyAxiomsForSubProperty(property))) {
if (isDisplayed(ax)) {
supers.put(ax.getSuperProperty(), ax);
axioms.add(ax);
}
}
writeSection(SUB_PROPERTY_OF, supers, ",", true, ontology);
}
}
if (!isFiltered(AxiomType.EQUIVALENT_DATA_PROPERTIES)) {
for (OWLOntology ontology : ontologies) {
SectionMap props = new SectionMap<>();
for (OWLEquivalentDataPropertiesAxiom ax : sortedCollection(
ontology.getEquivalentDataPropertiesAxioms(property))) {
if (isDisplayed(ax) && ax.getProperties().size() == 2) {
props.put(ax.getPropertiesMinus(property).iterator().next(), ax);
axioms.add(ax);
}
}
writeSection(EQUIVALENT_TO, props, ",", true, ontology);
}
}
if (!isFiltered(AxiomType.DISJOINT_DATA_PROPERTIES)) {
for (OWLOntology ontology : ontologies) {
SectionMap props = new SectionMap<>();
for (OWLDisjointDataPropertiesAxiom ax : sortedCollection(
ontology.getDisjointDataPropertiesAxioms(property))) {
if (ax.getProperties().size() == 2 && isDisplayed(ax)) {
props.put(ax.getPropertiesMinus(property).iterator().next(), ax);
axioms.add(ax);
}
}
props.remove(property);
writeSection(DISJOINT_WITH, props, ",", true, ontology);
}
}
if (!isFiltered(AxiomType.SWRL_RULE)) {
for (OWLOntology ontology : ontologies) {
Collection rules = new ArrayList<>();
for (SWRLRule rule : sortedCollection(ontology.getAxioms(AxiomType.SWRL_RULE))) {
if (isDisplayed(rule)) {
for (SWRLAtom atom : rule.getHead()) {
if (atom.getPredicate().equals(property)) {
writeSection(RULE, rules, "", true, ontology);
break;
}
}
}
}
}
}
writeEntitySectionEnd(DATA_PROPERTY.toString());
return axioms;
}
/**
* @param individual the individual
* @return the sets the
*/
@Nonnull
public Collection write(@Nonnull OWLIndividual individual) {
List axioms = new ArrayList<>();
axioms.addAll(writeEntityStart(INDIVIDUAL, individual));
if (!isFiltered(AxiomType.CLASS_ASSERTION)) {
for (OWLOntology ontology : ontologies) {
SectionMap expressions = new SectionMap<>();
for (OWLClassAssertionAxiom ax : sortedCollection(
ontology.getClassAssertionAxioms(individual))) {
if (isDisplayed(ax)) {
expressions.put(ax.getClassExpression(), ax);
axioms.add(ax);
}
}
writeSection(TYPES, expressions, ",", true, ontology);
}
}
for (OWLOntology ontology : ontologies) {
Collection> assertions = sortedCollection();
assertions.addAll(ontology.getObjectPropertyAssertionAxioms(individual));
assertions.addAll(ontology.getNegativeObjectPropertyAssertionAxioms(individual));
assertions.addAll(ontology.getDataPropertyAssertionAxioms(individual));
assertions.addAll(ontology.getNegativeDataPropertyAssertionAxioms(individual));
if (!assertions.isEmpty()) {
fireSectionRenderingPrepared(FACTS.toString());
writeSection(FACTS);
writeSpace();
writeOntologiesList(ontology);
incrementTab(1);
writeNewLine();
fireSectionRenderingStarted(FACTS.toString());
for (Iterator> it = assertions.iterator(); it
.hasNext();) {
OWLPropertyAssertionAxiom ax = it.next();
fireSectionItemPrepared(FACTS.toString());
Set annos = ax.getAnnotations();
if (!annos.isEmpty()) {
writeAnnotations(annos);
pushTab(getIndent() + 1);
}
if (ax instanceof OWLNegativeDataPropertyAssertionAxiom
|| ax instanceof OWLNegativeObjectPropertyAssertionAxiom) {
write(NOT);
writeSpace();
}
ax.getProperty().accept(this);
writeSpace();
writeSpace();
ax.getObject().accept(this);
if (!annos.isEmpty()) {
popTab();
}
fireSectionItemFinished(FACTS.toString());
if (it.hasNext()) {
write(",");
writeNewLine();
}
}
popTab();
writeNewLine();
writeNewLine();
}
}
if (!isFiltered(AxiomType.SAME_INDIVIDUAL)) {
for (OWLOntology ontology : ontologies) {
Collection inds = sortedCollection();
for (OWLSameIndividualAxiom ax : ontology.getSameIndividualAxioms(individual)) {
if (isDisplayed(ax) && ax.getIndividuals().size() == 2
&& ax.getAnnotations().isEmpty()) {
inds.addAll(ax.getIndividuals());
axioms.add(ax);
}
}
inds.remove(individual);
writeSection(SAME_AS, inds, ",", true, ontology);
}
}
if (!isFiltered(AxiomType.DIFFERENT_INDIVIDUALS)) {
for (OWLOntology ontology : ontologies) {
Collection inds = sortedCollection();
Collection nary = sortedCollection();
for (OWLDifferentIndividualsAxiom ax : ontology
.getDifferentIndividualAxioms(individual)) {
if (isDisplayed(ax)) {
if (ax.getIndividuals().size() == 2 && ax.getAnnotations().isEmpty()) {
inds.addAll(ax.getIndividuals());
axioms.add(ax);
} else {
nary.add(ax);
}
}
}
inds.remove(individual);
writeSection(DIFFERENT_FROM, inds, ",", true, ontology);
if (renderExtensions) {
for (OWLDifferentIndividualsAxiom ax : nary) {
writeSection(DIFFERENT_INDIVIDUALS, ax.getIndividuals(), ", ", false,
ontology);
}
}
}
}
writeEntitySectionEnd(INDIVIDUAL.toString());
return axioms;
}
/**
* @param datatype the datatype
* @return the sets the
*/
@Nonnull
public Collection write(@Nonnull OWLDatatype datatype) {
List axioms = new ArrayList<>();
axioms.addAll(writeEntityStart(DATATYPE, datatype));
if (!isFiltered(AxiomType.DATATYPE_DEFINITION)) {
for (OWLOntology ontology : ontologies) {
Collection dataRanges = sortedCollection();
for (OWLDatatypeDefinitionAxiom ax : ontology.getDatatypeDefinitions(datatype)) {
if (isDisplayed(ax)) {
axioms.add(ax);
dataRanges.add(ax.getDataRange());
}
}
writeSection(EQUIVALENT_TO, dataRanges, ",", true, ontology);
}
}
writeEntitySectionEnd(DATATYPE.toString());
return axioms;
}
/**
* @param rule the rule
* @return written axioms
*/
@Nonnull
public Collection write(@Nonnull SWRLRule rule) {
List axioms = new ArrayList<>(1);
for (OWLOntology ontology : ontologies) {
if (ontology.containsAxiom(rule)) {
writeSection(RULE, CollectionFactory.createSet(rule), "", true, ontology);
axioms.add(rule);
}
}
return axioms;
}
/**
* @param property the property
* @return written axioms
*/
@Nonnull
public Collection write(@Nonnull OWLAnnotationProperty property) {
List axioms = new ArrayList<>();
axioms.addAll(writeEntityStart(ANNOTATION_PROPERTY, property));
if (!isFiltered(AxiomType.SUB_ANNOTATION_PROPERTY_OF)) {
for (OWLOntology ont : ontologies) {
Collection props = sortedCollection();
for (OWLSubAnnotationPropertyOfAxiom ax : ont
.getSubAnnotationPropertyOfAxioms(property)) {
if (isDisplayed(ax)) {
props.add(ax.getSuperProperty());
}
}
writeSection(SUB_PROPERTY_OF, props, ",", true, ont);
}
}
if (!isFiltered(AxiomType.ANNOTATION_PROPERTY_DOMAIN)) {
for (OWLOntology ont : ontologies) {
Collection iris = sortedCollection();
for (OWLAnnotationPropertyDomainAxiom ax : ont
.getAnnotationPropertyDomainAxioms(property)) {
if (isDisplayed(ax)) {
iris.add(ax.getDomain());
}
}
writeSection(DOMAIN, iris, ",", true, ont);
}
}
if (!isFiltered(AxiomType.ANNOTATION_PROPERTY_RANGE)) {
for (OWLOntology ont : ontologies) {
Collection iris = sortedCollection();
for (OWLAnnotationPropertyRangeAxiom ax : ont
.getAnnotationPropertyRangeAxioms(property)) {
if (isDisplayed(ax)) {
iris.add(ax.getRange());
}
}
writeSection(RANGE, iris, ",", true, ont);
}
}
writeEntitySectionEnd(ANNOTATION_PROPERTY.toString());
return axioms;
}
/**
* Write entity start.
*
* @param keyword the keyword
* @param entity the entity
* @return written axioms
*/
private Collection writeEntityStart(
@Nonnull ManchesterOWLSyntax keyword, @Nonnull OWLObject entity) {
event = new RendererEvent(this, entity);
String kw = keyword.toString();
fireFrameRenderingPrepared(kw);
writeSection(keyword);
entity.accept(this);
fireFrameRenderingStarted(kw);
writeNewLine();
incrementTab(4);
writeNewLine();
if (entity instanceof OWLEntity) {
return writeAnnotations(((OWLEntity) entity).getIRI());
} else if (entity instanceof OWLAnonymousIndividual) {
return writeAnnotations((OWLAnonymousIndividual) entity);
}
return CollectionFactory.emptySet();
}
/**
* Write annotations.
*
* @param subject the subject
* @return written axioms
*/
@Nonnull
public Collection writeAnnotations(
@Nonnull OWLAnnotationSubject subject) {
Collection axioms = sortedCollection();
if (!isFiltered(AxiomType.ANNOTATION_ASSERTION)) {
for (OWLOntology ontology : ontologies) {
SectionMap sectionMap = new SectionMap<>();
ontology.getAnnotationAssertionAxioms(subject).stream().sorted()
.filter(this::isDisplayed).forEach(ax -> {
axioms.add(ax);
sectionMap.put(ax.getAnnotation(), ax);
});
writeSection(ANNOTATIONS, sectionMap, ",", true, ontology);
}
}
return axioms;
}
/**
* Write section.
*
* @param keyword the keyword
*/
public void writeSection(@Nonnull ManchesterOWLSyntax keyword) {
write("", keyword, "");
write(":");
writeSpace();
}
private void writeSection(@Nonnull ManchesterOWLSyntax keyword,
@Nonnull SectionMap content, String delimeter, boolean newline,
@Nonnull OWLOntology... ontologiesList) {
String sec = keyword.toString();
if (content.isNotEmpty()
|| renderingDirector.renderEmptyFrameSection(keyword, ontologiesList)) {
fireSectionRenderingPrepared(sec);
writeSection(keyword);
writeOntologiesList(ontologiesList);
incrementTab(4);
writeNewLine();
fireSectionRenderingStarted(sec);
for (Iterator it = content.getSectionObjects().iterator(); it.hasNext();) {
Object obj = it.next();
Collection> annotationSets =
content.getAnnotationsForSectionObject(obj);
for (Iterator> annosSetIt =
annotationSets.iterator(); annosSetIt.hasNext();) {
Collection annos = annosSetIt.next();
fireSectionItemPrepared(sec);
if (!annos.isEmpty()) {
incrementTab(4);
writeNewLine();
write(ManchesterOWLSyntax.ANNOTATIONS.toString());
write(": ");
pushTab(getIndent() + 1);
for (Iterator annoIt = annos.iterator(); annoIt.hasNext();) {
annoIt.next().accept(this);
if (annoIt.hasNext()) {
write(", ");
writeNewLine();
}
}
popTab();
popTab();
writeNewLine();
}
// Write actual object
if (obj instanceof OWLObject) {
((OWLObject) obj).accept(this);
} else if (obj instanceof Collection) {
for (Iterator listIt = ((Collection) obj).iterator(); listIt
.hasNext();) {
Object o = listIt.next();
if (o instanceof OWLObject) {
((OWLObject) o).accept(this);
} else {
write(o.toString());
}
if (listIt.hasNext()) {
write(delimeter);
if (newline) {
writeNewLine();
}
}
}
} else {
write(obj.toString());
}
if (annosSetIt.hasNext()) {
write(",");
writeNewLine();
}
}
if (it.hasNext()) {
write(delimeter);
fireSectionItemFinished(sec);
if (newline) {
writeNewLine();
}
} else {
fireSectionItemFinished(sec);
}
}
fireSectionRenderingFinished(sec);
popTab();
writeNewLine();
writeNewLine();
}
}
/**
* Write section.
*
* @param keyword the keyword
* @param content the content
* @param delimiter the delimiter
* @param newline the newline
* @param ontologiesList the ontologies list
*/
public void writeSection(@Nonnull ManchesterOWLSyntax keyword, @Nonnull Collection content,
String delimiter, boolean newline, @Nonnull OWLOntology... ontologiesList) {
String sec = keyword.toString();
if (!content.isEmpty()
|| renderingDirector.renderEmptyFrameSection(keyword, ontologiesList)) {
fireSectionRenderingPrepared(sec);
writeSection(keyword);
writeOntologiesList(ontologiesList);
incrementTab(4);
writeNewLine();
fireSectionRenderingStarted(sec);
for (Iterator it = content.iterator(); it.hasNext();) {
Object obj = it.next();
fireSectionItemPrepared(sec);
if (obj instanceof OWLObject) {
((OWLObject) obj).accept(this);
} else {
write(obj.toString());
}
if (it.hasNext()) {
write(delimiter);
fireSectionItemFinished(sec);
if (newline) {
writeNewLine();
}
} else {
fireSectionItemFinished(sec);
}
}
fireSectionRenderingFinished(sec);
popTab();
writeNewLine();
writeNewLine();
}
}
/**
* Write comment.
*
* @param comment the comment
* @param placeOnNewline the place on newline
*/
public void writeComment(String comment, boolean placeOnNewline) {
writeComment("#", comment, placeOnNewline);
}
/**
* @param commentDelim the comment delim
* @param comment the comment
* @param placeOnNewline the place on newline
*/
public void writeComment(String commentDelim, String comment, boolean placeOnNewline) {
if (placeOnNewline) {
writeNewLine();
}
write(commentDelim);
write(comment);
writeNewLine();
}
/**
* Write ontologies list.
*
* @param ontologiesList the ontologies list
*/
private void writeOntologiesList(@Nonnull OWLOntology... ontologiesList) {
if (!renderExtensions) {
return;
}
if (ontologiesList.length == 0) {
return;
}
write("[in ");
int count = 0;
for (OWLOntology ont : ontologiesList) {
write(shortFormProvider.getShortForm(ont));
count++;
if (count < ontologiesList.length) {
write(", ");
}
}
write("]");
}
/** The event. */
private RendererEvent event;
/**
* Fire frame rendering prepared.
*
* @param section the section
*/
private void fireFrameRenderingPrepared(String section) {
if (listeners.isEmpty()) {
return;
}
for (RendererListener listener : listeners) {
listener.frameRenderingPrepared(section, event);
}
}
/**
* Fire frame rendering started.
*
* @param section the section
*/
private void fireFrameRenderingStarted(String section) {
if (listeners.isEmpty()) {
return;
}
for (RendererListener listener : listeners) {
listener.frameRenderingStarted(section, event);
}
}
/**
* Fire frame rendering finished.
*
* @param section the section
*/
private void fireFrameRenderingFinished(String section) {
if (listeners.isEmpty()) {
return;
}
for (RendererListener listener : listeners) {
listener.frameRenderingFinished(section, event);
}
}
/**
* Fire section rendering prepared.
*
* @param section the section
*/
private void fireSectionRenderingPrepared(String section) {
if (listeners.isEmpty()) {
return;
}
for (RendererListener listener : listeners) {
listener.sectionRenderingPrepared(section, event);
}
}
/**
* Fire section rendering started.
*
* @param section the section
*/
private void fireSectionRenderingStarted(String section) {
if (listeners.isEmpty()) {
return;
}
for (RendererListener listener : listeners) {
listener.sectionRenderingStarted(section, event);
}
}
/**
* Fire section rendering finished.
*
* @param section the section
*/
private void fireSectionRenderingFinished(String section) {
if (listeners.isEmpty()) {
return;
}
for (RendererListener listener : listeners) {
listener.sectionRenderingFinished(section, event);
}
}
/**
* Fire section item prepared.
*
* @param section the section
*/
private void fireSectionItemPrepared(String section) {
if (listeners.isEmpty()) {
return;
}
for (RendererListener listener : listeners) {
listener.sectionItemPrepared(section, event);
}
}
/**
* Fire section item finished.
*
* @param section the section
*/
private void fireSectionItemFinished(String section) {
if (listeners.isEmpty()) {
return;
}
for (RendererListener listener : listeners) {
listener.sectionItemFinished(section, event);
}
}
/** The Class DefaultRenderingDirector. */
private static class DefaultRenderingDirector implements RenderingDirector {
/** Instantiates a new default rendering director. */
DefaultRenderingDirector() {}
@Override
public boolean renderEmptyFrameSection(ManchesterOWLSyntax frameSectionKeyword,
OWLOntology... ontologies) {
return false;
}
}
@Nonnull
Collection sortedCollection() {
return new TreeSet<>(owlObjectComparator);
}
@Nonnull
Collection sortedSet() {
return new TreeSet<>();
}
@Nonnull
Collection sortedCollection(@Nonnull Collection fromCollection) {
Collection set = sortedCollection();
set.addAll(fromCollection);
return set;
}
}
