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package edu.stanford.protege.webprotege.mansyntax;
import edu.stanford.protege.webprotege.index.ProjectOntologiesIndex;
import edu.stanford.protege.webprotege.project.DefaultOntologyIdManager;
import edu.stanford.protege.webprotege.shortform.WebProtegeOntologyIRIShortFormProvider;
import org.semanticweb.owlapi.expression.OWLOntologyChecker;
import org.semanticweb.owlapi.model.OWLOntology;
import org.semanticweb.owlapi.model.OWLOntologyID;
import javax.annotation.Nonnull;
import javax.annotation.Nullable;
import javax.inject.Inject;
import static com.google.common.base.Preconditions.checkNotNull;
/**
* Matthew Horridge
* Stanford Center for Biomedical Informatics Research
* 2019-08-22
*/
public class ShellOntologyChecker implements OWLOntologyChecker {
@Nonnull
private final ProjectOntologiesIndex projectOntologiesIndex;
@Nonnull
private final WebProtegeOntologyIRIShortFormProvider shortFormProvider;
private final DefaultOntologyIdManager defaultOntologyIdManager;
@Inject
public ShellOntologyChecker(@Nonnull ProjectOntologiesIndex projectOntologiesIndex,
@Nonnull WebProtegeOntologyIRIShortFormProvider shortFormProvider,
DefaultOntologyIdManager defaultOntologyIdManager) {
this.projectOntologiesIndex = checkNotNull(projectOntologiesIndex);
this.shortFormProvider = checkNotNull(shortFormProvider);
this.defaultOntologyIdManager = checkNotNull(defaultOntologyIdManager);
}
@Nullable
@Override
public OWLOntology getOntology(@Nullable String name) {
if(name == null) {
OWLOntologyID defaultOntologyId = defaultOntologyIdManager.getDefaultOntologyId();
return ShellOwlOntology.get(defaultOntologyId);
}
return projectOntologiesIndex.getOntologyIds()
.filter(ontId -> shortFormProvider.getShortForm(ontId)
.equalsIgnoreCase(name))
.findFirst()
.map(ShellOwlOntology::new)
.orElse(null);
}
}
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