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package edu.stanford.protege.webprotege.match;
import edu.stanford.protege.webprotege.hierarchy.ClassHierarchyProvider;
import edu.stanford.protege.webprotege.index.ClassAssertionAxiomsByClassIndex;
import edu.stanford.protege.webprotege.index.ProjectOntologiesIndex;
import edu.stanford.protege.webprotege.index.ProjectSignatureByTypeIndex;
import edu.stanford.protege.webprotege.criteria.HierarchyFilterType;
import org.semanticweb.owlapi.model.*;
import javax.annotation.Nonnull;
import java.util.Collection;
import java.util.Set;
import java.util.stream.Stream;
import static com.google.common.base.Preconditions.checkNotNull;
import static java.util.stream.Collectors.toSet;
/**
* Matthew Horridge
* Stanford Center for Biomedical Informatics Research
* 25 Jun 2018
*/
public class InstanceOfMatcher implements Matcher {
@Nonnull
private final ClassHierarchyProvider hierarchyProvider;
@Nonnull
private final ProjectOntologiesIndex projectOntologiesIndex;
@Nonnull
private final ClassAssertionAxiomsByClassIndex classAssertionsByClass;
@Nonnull
private final ProjectSignatureByTypeIndex projectSignatureByType;
@Nonnull
private final OWLClass target;
@Nonnull
private final HierarchyFilterType filterType;
private boolean initialised = false;
private Set instances;
public InstanceOfMatcher(@Nonnull ClassHierarchyProvider hierarchyProvider,
@Nonnull ProjectOntologiesIndex projectOntologiesIndex,
@Nonnull ClassAssertionAxiomsByClassIndex classAssertionsByClass,
@Nonnull ProjectSignatureByTypeIndex projectSignatureByType,
@Nonnull OWLClass target,
@Nonnull HierarchyFilterType filterType) {
this.hierarchyProvider = checkNotNull(hierarchyProvider);
this.projectOntologiesIndex = checkNotNull(projectOntologiesIndex);
this.classAssertionsByClass = checkNotNull(classAssertionsByClass);
this.projectSignatureByType = checkNotNull(projectSignatureByType);
this.target = checkNotNull(target);
this.filterType = checkNotNull(filterType);
}
@SuppressWarnings("SuspiciousMethodCalls")
@Override
public boolean matches(@Nonnull OWLEntity value) {
if(!initialised) {
if(filterType == HierarchyFilterType.DIRECT) {
instances = getClassAssertionAxioms(target)
.map(OWLClassAssertionAxiom::getIndividual)
.filter(OWLIndividual::isNamed)
.map(ind -> (OWLNamedIndividual) ind)
.collect(toSet());
}
else {
if(target.isOWLThing()) {
instances = projectSignatureByType.getSignature(EntityType.NAMED_INDIVIDUAL)
.collect(toSet());
}
else {
Collection clses = hierarchyProvider.getDescendants(target);
clses.add(target);
instances = clses.stream()
.flatMap(this::getClassAssertionAxioms)
.map(OWLClassAssertionAxiom::getIndividual)
.filter(OWLIndividual::isNamed)
.map(ind -> (OWLNamedIndividual) ind)
.collect(toSet());
}
}
initialised = true;
}
return instances.contains(value);
}
private Stream getClassAssertionAxioms(OWLClass cls) {
return projectOntologiesIndex.getOntologyIds()
.flatMap(ontId -> classAssertionsByClass.getClassAssertionAxioms(
cls,
ontId));
}
}
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