ucar.nc2.ft.scan.FeatureScan Maven / Gradle / Ivy
/*
* Copyright (c) 1998 - 2009. University Corporation for Atmospheric Research/Unidata
* Portions of this software were developed by the Unidata Program at the
* University Corporation for Atmospheric Research.
*
* Access and use of this software shall impose the following obligations
* and understandings on the user. The user is granted the right, without
* any fee or cost, to use, copy, modify, alter, enhance and distribute
* this software, and any derivative works thereof, and its supporting
* documentation for any purpose whatsoever, provided that this entire
* notice appears in all copies of the software, derivative works and
* supporting documentation. Further, UCAR requests that the user credit
* UCAR/Unidata in any publications that result from the use of this
* software or in any product that includes this software. The names UCAR
* and/or Unidata, however, may not be used in any advertising or publicity
* to endorse or promote any products or commercial entity unless specific
* written permission is obtained from UCAR/Unidata. The user also
* understands that UCAR/Unidata is not obligated to provide the user with
* any support, consulting, training or assistance of any kind with regard
* to the use, operation and performance of this software nor to provide
* the user with any updates, revisions, new versions or "bug fixes."
*
* THIS SOFTWARE IS PROVIDED BY UCAR/UNIDATA "AS IS" AND ANY EXPRESS OR
* IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
* WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
* DISCLAIMED. IN NO EVENT SHALL UCAR/UNIDATA BE LIABLE FOR ANY SPECIAL,
* INDIRECT OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING
* FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT,
* NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION
* WITH THE ACCESS, USE OR PERFORMANCE OF THIS SOFTWARE.
*/
package ucar.nc2.ft.scan;
import ucar.nc2.constants.FeatureType;
import ucar.nc2.constants._Coordinate;
import ucar.nc2.dataset.CoordinateSystem;
import ucar.nc2.dataset.NetcdfDataset;
import ucar.nc2.ft.FeatureDataset;
import ucar.nc2.ft.FeatureDatasetFactoryManager;
import ucar.nc2.ft.grid.impl.CoverageCSFactory;
import java.io.File;
import java.io.IOException;
import java.io.PrintWriter;
import java.io.StringWriter;
import java.util.ArrayList;
import java.util.Collections;
import java.util.Formatter;
import java.util.List;
/**
* Scan a directory, try to open files as a Feature Type dataset.
*
* @author caron
* @since Aug 15, 2009
*/
public class FeatureScan {
private String top;
private boolean subdirs;
public FeatureScan(String top, boolean subdirs) {
this.top = top;
this.subdirs = subdirs;
}
public java.util.List scan(Formatter errlog) {
List result = new ArrayList<>();
File topFile = new File(top);
if (!topFile.exists()) {
errlog.format("File %s does not exist", top);
return result;
}
if (topFile.isDirectory())
scanDirectory(topFile, result, errlog);
else {
Bean fdb = new Bean(topFile);
result.add(fdb);
}
return result;
}
private void scanDirectory(File dir, java.util.List result, Formatter errlog) {
if ((dir.getName().equals("exclude")) || (dir.getName().equals("problem")))return;
// get list of files
List files = new ArrayList<>();
for (File f : dir.listFiles()) {
if (!f.isDirectory()) {
files.add(f);
}
}
// eliminate redundant files
// ".Z", ".zip", ".gzip", ".gz", or ".bz2"
if (files.size() > 0) {
Collections.sort(files);
ArrayList files2 = new ArrayList(files);
File prev = null;
for (File f : files) {
String name = f.getName();
String stem = stem(name);
if (name.endsWith(".gbx") || name.endsWith(".gbx8") || name.endsWith(".pdf") || name.endsWith(".xml") || name.endsWith(".gbx9")
|| name.endsWith(".ncx") || name.endsWith(".txt") || name.endsWith(".tar")) {
files2.remove(f);
} else if (prev != null) {
if (name.endsWith(".ncml")) {
if (prev.getName().equals(stem) || prev.getName().equals(stem + ".nc"))
files2.remove(prev);
} else if (name.endsWith(".bz2")) {
if (prev.getName().equals(stem)) files2.remove(f);
} else if (name.endsWith(".gz")) {
if (prev.getName().equals(stem)) files2.remove(f);
} else if (name.endsWith(".gzip")) {
if (prev.getName().equals(stem)) files2.remove(f);
} else if (name.endsWith(".zip")) {
if (prev.getName().equals(stem)) files2.remove(f);
} else if (name.endsWith(".Z")) {
if (prev.getName().equals(stem)) files2.remove(f);
}
}
prev = f;
}
// do the remaining
for (File f : files2) {
result.add(new Bean(f));
}
}
// do subdirs
if (subdirs) {
for (File f : dir.listFiles()) {
if (f.isDirectory() && !f.getName().equals("exclude"))
scanDirectory(f, result, errlog);
}
}
}
private String stem(String name) {
int pos = name.lastIndexOf('.');
return (pos > 0) ? name.substring(0, pos) : name;
}
private static final boolean debug = true;
public class Bean {
public File f;
String fileType;
String coordMap;
FeatureType featureType, ftFromMetadata;
String ftype;
StringBuilder info = new StringBuilder();
String coordSysBuilder;
String ftImpl;
Throwable problem;
String isCoverage;
// no-arg constructor
public Bean() {
}
public Bean(File f) {
this.f = f;
if (debug) System.out.printf(" featureScan=%s%n", f.getPath());
try (NetcdfDataset ds = NetcdfDataset.openDataset(f.getPath())){
fileType = ds.getFileTypeId();
setCoordMap(ds.getCoordinateSystems());
coordSysBuilder = ds.findAttValueIgnoreCase(null, _Coordinate._CoordSysBuilder, "none");
Formatter errlog = new Formatter();
isCoverage = CoverageCSFactory.describe(errlog, ds);
info.append(errlog.toString());
ftFromMetadata = FeatureDatasetFactoryManager.findFeatureType(ds);
try {
errlog = new Formatter();
FeatureDataset featureDataset = FeatureDatasetFactoryManager.wrap(null, ds, null, errlog);
info.append("FeatureDatasetFactoryManager errlog = ");
info.append(errlog.toString());
info.append("\n\n");
if (featureDataset != null) {
featureType = featureDataset.getFeatureType();
if (featureType != null)
ftype = featureType.toString();
ftImpl = featureDataset.getImplementationName();
Formatter infof = new Formatter();
featureDataset.getDetailInfo(infof);
info.append(infof.toString());
} else {
ftype = "";
}
} catch (Throwable t) {
ftype = " ERR: " + t.getMessage();
info.append(errlog.toString());
problem = t;
}
} catch (Throwable t) {
fileType = " ERR: " + t.getMessage();
problem = t;
}
}
public String getName() {
return f.getPath();
}
public String getFileType() {
return fileType;
}
public String getSizeK() {
Formatter fm = new Formatter();
//long size = f.length();
//if (size > 10 * 1000 * 1000) fm.format("%6.1f M", ((float) size) / 1000 / 1000);
//else if (size > 10 * 1000) fm.format("%6.1f K", ((float) size) / 1000);
//else fm.format("%d", size);
fm.format("%,10d", f.length() / 1000);
return fm.toString();
}
public String getCoordMap() {
return coordMap;
}
public String getCoordSysBuilder() {
return coordSysBuilder;
}
public void setCoordMap(java.util.List csysList) {
CoordinateSystem use = null;
for (CoordinateSystem csys : csysList) {
if (use == null) use = csys;
else if (csys.getCoordinateAxes().size() > use.getCoordinateAxes().size())
use = csys;
}
coordMap = (use == null) ? "" : "f:D(" + use.getRankDomain() + ")->R(" + use.getRankRange() + ")";
}
public String getFeatureType() {
return ftype;
}
public String getFtMetadata() {
return (ftFromMetadata == null) ? "" : ftFromMetadata.toString();
}
public String getFeatureImpl() {
return ftImpl;
}
public String getCoverage() {
return isCoverage == null ? "" : isCoverage;
}
public void toString(Formatter f, boolean showInfo) {
f.format("%s%n %s%n map = '%s'%n %s%n %s%n", getName(), getFileType(), getCoordMap(), getFeatureType(), getFeatureImpl());
if (showInfo && info != null) {
f.format("%n%s", info);
}
if (problem != null) {
StringWriter sw = new StringWriter(5000);
problem.printStackTrace(new PrintWriter(sw));
f.format(sw.toString());
}
}
public String toString() {
Formatter f = new Formatter();
toString(f, true);
return f.toString();
}
public String runClassifier() {
Formatter ff = new Formatter();
String type = null;
try (NetcdfDataset ds = NetcdfDataset.openDataset(f.getPath())) {
type = CoverageCSFactory.describe(ff, ds);
} catch (IOException e) {
StringWriter sw = new StringWriter(10000);
e.printStackTrace(new PrintWriter(sw));
ff.format("%n%s", sw.toString());
}
ff.format("CoverageCS.Type = %s", type);
return ff.toString();
}
}
public static void main(String arg[]) {
String usage = "usage: ucar.nc2.ft.scan.FeatureScan directory [-subdirs]";
if (arg.length < 1) {
System.out.println(usage);
System.exit(0);
}
boolean subdirs = false;
for (int i = 1; i < arg.length; i++) {
String s = arg[i];
if (s.equalsIgnoreCase("-subdirs")) subdirs = true;
}
FeatureScan scanner = new FeatureScan(arg[0], subdirs);
System.out.printf(" %-60s %-20s %-10s %-10s%n", "name", "fileType", "featureType", "featureImpl");
List beans = scanner.scan(new Formatter());
for (Bean b : beans)
System.out.printf(" %-60s %-20s %-10s %-10s%n", b.getName(), b.getFileType(), b.getFeatureType(), b.getFeatureImpl());
}
}
© 2015 - 2025 Weber Informatics LLC | Privacy Policy