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The NetCDF-Java Library is a Java interface to NetCDF files, as well as to many other types of scientific data formats.
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/*
 * Copyright 1998-2014 University Corporation for Atmospheric Research/Unidata
 *
 *   Portions of this software were developed by the Unidata Program at the
 *   University Corporation for Atmospheric Research.
 *
 *   Access and use of this software shall impose the following obligations
 *   and understandings on the user. The user is granted the right, without
 *   any fee or cost, to use, copy, modify, alter, enhance and distribute
 *   this software, and any derivative works thereof, and its supporting
 *   documentation for any purpose whatsoever, provided that this entire
 *   notice appears in all copies of the software, derivative works and
 *   supporting documentation.  Further, UCAR requests that the user credit
 *   UCAR/Unidata in any publications that result from the use of this
 *   software or in any product that includes this software. The names UCAR
 *   and/or Unidata, however, may not be used in any advertising or publicity
 *   to endorse or promote any products or commercial entity unless specific
 *   written permission is obtained from UCAR/Unidata. The user also
 *   understands that UCAR/Unidata is not obligated to provide the user with
 *   any support, consulting, training or assistance of any kind with regard
 *   to the use, operation and performance of this software nor to provide
 *   the user with any updates, revisions, new versions or "bug fixes."
 *
 *   THIS SOFTWARE IS PROVIDED BY UCAR/UNIDATA "AS IS" AND ANY EXPRESS OR
 *   IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
 *   WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
 *   DISCLAIMED. IN NO EVENT SHALL UCAR/UNIDATA BE LIABLE FOR ANY SPECIAL,
 *   INDIRECT OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING
 *   FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT,
 *   NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION
 *   WITH THE ACCESS, USE OR PERFORMANCE OF THIS SOFTWARE.
 */
package ucar.ma2;

/**
 * Handles nested sequences: a 1D array of variable length 1D arrays of StructureData.
 * Uses same technique as ArrayStructureMA for the inner fields; data storage is in member arrays.
 * Used only by opendap internals.
 *
 * Example use:
 *     ArraySequence aseq = new ArraySequence( members, outerLength);
    for (int seq=0; seq < outerLength; seq++) {
      aseq.setSequenceLength(seq, seqLength);
    }
    aseq.finish();
 
 *
 * @author caron
 */
public class ArraySequenceNested extends ArrayStructure {
  private int[] sequenceLen;
  private int[] sequenceOffset;
  private int total = 0;

  /**
   * This is used for inner sequences, ie variable length structures nested inside of another structure.
   * @param members the members of the STructure
   * @param nseq the number of sequences, ie the length of the outer structure.
   */
  public ArraySequenceNested(StructureMembers members, int nseq) {
    super(members, new int[] {nseq});
    sequenceLen = new int[nseq];
  }

  // not sure how this is used
  protected StructureData makeStructureData( ArrayStructure as, int index) {
    return new StructureDataA( as, index);
  }

  public StructureData getStructureData(int index) {
    return new StructureDataA( this, index);
  }

  /**
   * Set the length of one of the sequences.
   * @param outerIndex which sequence?
   * @param len what is its length?
   */
  public void setSequenceLength( int outerIndex, int len) {
    sequenceLen[outerIndex] = len;
  }

  /**
   * Get the length of the ith sequence.
   * @param outerIndex which sequence?
   * @return its length
   */
  public int getSequenceLength( int outerIndex) {
    return sequenceLen[outerIndex];
  }

  /**
   * Get the the starting index of the ith sequence.
   * @param outerIndex which sequence?
   * @return its starting index
   */
  public int getSequenceOffset( int outerIndex) {
    return sequenceOffset[outerIndex];
  }

  /**
   * Call this when you have set all the sequence lengths.
   */
  public void finish() {
    sequenceOffset = new int[nelems];

    total = 0;
    for (int i=0; i