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The NetCDF-Java Library is a Java interface to NetCDF files, as well as to many other types of scientific data formats.
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/*
 * Copyright 1998-2014 University Corporation for Atmospheric Research/Unidata
 *
 *   Portions of this software were developed by the Unidata Program at the
 *   University Corporation for Atmospheric Research.
 *
 *   Access and use of this software shall impose the following obligations
 *   and understandings on the user. The user is granted the right, without
 *   any fee or cost, to use, copy, modify, alter, enhance and distribute
 *   this software, and any derivative works thereof, and its supporting
 *   documentation for any purpose whatsoever, provided that this entire
 *   notice appears in all copies of the software, derivative works and
 *   supporting documentation.  Further, UCAR requests that the user credit
 *   UCAR/Unidata in any publications that result from the use of this
 *   software or in any product that includes this software. The names UCAR
 *   and/or Unidata, however, may not be used in any advertising or publicity
 *   to endorse or promote any products or commercial entity unless specific
 *   written permission is obtained from UCAR/Unidata. The user also
 *   understands that UCAR/Unidata is not obligated to provide the user with
 *   any support, consulting, training or assistance of any kind with regard
 *   to the use, operation and performance of this software nor to provide
 *   the user with any updates, revisions, new versions or "bug fixes."
 *
 *   THIS SOFTWARE IS PROVIDED BY UCAR/UNIDATA "AS IS" AND ANY EXPRESS OR
 *   IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
 *   WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
 *   DISCLAIMED. IN NO EVENT SHALL UCAR/UNIDATA BE LIABLE FOR ANY SPECIAL,
 *   INDIRECT OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING
 *   FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT,
 *   NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION
 *   WITH THE ACCESS, USE OR PERFORMANCE OF THIS SOFTWARE.
 */

package ucar.nc2.dataset.transform;

import ucar.nc2.Dimension;
import ucar.nc2.Variable;
import ucar.nc2.dataset.CoordinateTransform;
import ucar.nc2.dataset.NetcdfDataset;
import ucar.nc2.dataset.TransformType;
import ucar.nc2.dataset.VerticalCT;
import ucar.unidata.geoloc.vertical.OceanSG1;
import ucar.unidata.util.Parameter;

/**
 * Create a ocean_s_coordinate_g1 Vertical Transform from the information in the Coordinate Transform Variable.
 *
 * @author Sachin ([email protected])
 */
public class VOceanSG1 extends AbstractCoordTransBuilder {
  private String s = "", eta = "", depth = "", c = "", depth_c = "";

  public String getTransformName() {
    return "ocean_s_coordinate_g1";
  }

  public TransformType getTransformType() {
    return TransformType.Vertical;
  }

  public CoordinateTransform makeCoordinateTransform(NetcdfDataset ds, Variable ctv) {
    String formula_terms = getFormula(ds, ctv);
    if (null == formula_terms) return null;

    // :formula_terms = "s: s_rho eta: zeta depth: h c: Cs_r  depth_c: hc";
    String[] values = parseFormula(formula_terms, "s C eta depth  depth_c");
    if (values == null) return null;

    s = values[0];
    c = values[1];
    eta = values[2];
    depth = values[3];
    depth_c = values[4];


    CoordinateTransform rs = new VerticalCT("OceanSG1_Transform_" + ctv.getFullName(), getTransformName(), VerticalCT.Type.OceanSG1, this);
    rs.addParameter(new Parameter("standard_name", getTransformName()));
    rs.addParameter(new Parameter("formula_terms", formula_terms));
    rs.addParameter((new Parameter("height_formula", "height(x,y,z) =  depth_c*s(z) + (depth([n],x,y)-depth_c)*C(z) + eta(x,y)*(1+(depth_c*s(z) + (depth([n],x,y)-depth_c)*C(z))/depth([n],x,y))")));
    if (!addParameter(rs, OceanSG1.ETA, ds, eta)) return null;
    if (!addParameter(rs, OceanSG1.S, ds, s)) return null;
    if (!addParameter(rs, OceanSG1.DEPTH, ds, depth)) return null;
    if (!addParameter(rs, OceanSG1.DEPTH_C, ds, depth_c)) return null;
    if (!addParameter(rs, OceanSG1.C, ds, c)) return null;


    return rs;
  }

  public String toString() {
    return "OceanSG1:" + " s:" + s + " c:" + c + " eta:" + eta + " depth:" + depth + " depth_c:" + depth_c;
  }

  public ucar.unidata.geoloc.vertical.VerticalTransform makeMathTransform(NetcdfDataset ds, Dimension timeDim, VerticalCT vCT) {
    return new OceanSG1(ds, timeDim, vCT.getParameters());
  }
}