ucar.nc2.iosp.grid.GridCoordSys Maven / Gradle / Ivy
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The NetCDF-Java Library is a Java interface to NetCDF files,
as well as to many other types of scientific data formats.
/*
* Copyright 1998-2009 University Corporation for Atmospheric Research/Unidata
*
* Portions of this software were developed by the Unidata Program at the
* University Corporation for Atmospheric Research.
*
* Access and use of this software shall impose the following obligations
* and understandings on the user. The user is granted the right, without
* any fee or cost, to use, copy, modify, alter, enhance and distribute
* this software, and any derivative works thereof, and its supporting
* documentation for any purpose whatsoever, provided that this entire
* notice appears in all copies of the software, derivative works and
* supporting documentation. Further, UCAR requests that the user credit
* UCAR/Unidata in any publications that result from the use of this
* software or in any product that includes this software. The names UCAR
* and/or Unidata, however, may not be used in any advertising or publicity
* to endorse or promote any products or commercial entity unless specific
* written permission is obtained from UCAR/Unidata. The user also
* understands that UCAR/Unidata is not obligated to provide the user with
* any support, consulting, training or assistance of any kind with regard
* to the use, operation and performance of this software nor to provide
* the user with any updates, revisions, new versions or "bug fixes."
*
* THIS SOFTWARE IS PROVIDED BY UCAR/UNIDATA "AS IS" AND ANY EXPRESS OR
* IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
* WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
* DISCLAIMED. IN NO EVENT SHALL UCAR/UNIDATA BE LIABLE FOR ANY SPECIAL,
* INDIRECT OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING
* FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT,
* NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION
* WITH THE ACCESS, USE OR PERFORMANCE OF THIS SOFTWARE.
*/
package ucar.nc2.iosp.grid;
import ucar.ma2.*;
import ucar.nc2.*;
import ucar.nc2.constants.AxisType;
import ucar.nc2.constants._Coordinate;
import ucar.nc2.units.SimpleUnit;
import ucar.grid.GridRecord;
import ucar.grid.GridTableLookup;
import java.util.*;
/**
* A Coordinate System for a Grid variable.
* @author john
*/
public class GridCoordSys {
/** horizontal coordinate system */
private GridHorizCoordSys hcs;
/** a grid record */
private GridRecord record;
/** vertical name */
private String verticalName;
/** lookup table */
private GridTableLookup lookup;
/** list of levels */
private List levels;
/** flag for not using the vertical */
boolean dontUseVertical = false;
/** postive direction */
String positive = "up";
/** units */
String units;
/**
* Create a coordinate system
*
* @param hcs horizontal coord sys
* @param record grid record
* @param name name of the vertical dimension
* @param lookup lookuptable
*/
GridCoordSys(GridHorizCoordSys hcs, GridRecord record, String name,
GridTableLookup lookup) {
this.hcs = hcs;
this.record = record;
this.verticalName = name;
this.lookup = lookup;
this.levels = new ArrayList();
dontUseVertical = !lookup.isVerticalCoordinate(record);
positive = lookup.isPositiveUp(record)
? "up"
: "down";
units = lookup.getLevelUnit(record);
if (GridServiceProvider.debugVert) {
System.out.println("GridCoordSys: " + getVerticalDesc()
+ " useVertical= " + ( !dontUseVertical)
+ " positive=" + positive + " units=" + units);
}
}
/**
* Get the coordinate system name
*
* @return the coordinate system name
*/
String getCoordSysName() {
return verticalName + "_CoordSys";
}
/**
* Get the vertical name
*
* @return the vertical name
*/
String getVerticalName() {
return verticalName;
}
/**
* Get the vertical description
*
* @return the vertical description
*/
String getVerticalDesc() {
return verticalName + "(" + record.getLevelType1() + ")";
}
/**
* Get the number of levels
*
* @return the number of levels
*/
int getNLevels() {
return dontUseVertical
? 1
: levels.size();
}
/**
* Add levels from the GridRecords
*
* @param records the records
*/
void addLevels(List records) {
for (GridRecord record : records) {
Double d = new Double(record.getLevel1());
if ( !levels.contains(d)) {
levels.add(d);
}
if (dontUseVertical && (levels.size() > 1)) {
if (GridServiceProvider.debugVert) {
System.out.println(
"GribCoordSys: unused level coordinate has > 1 levels = "
+ verticalName + " " + record.getLevelType1() + " "
+ levels.size());
}
}
}
Collections.sort(levels);
if (positive.equals("down")) {
Collections.reverse(levels);
// TODO: delete
/* for( int i = 0; i < (levels.size()/2); i++ ){
Double tmp = (Double) levels.get( i );
levels.set( i, levels.get(levels.size() -i -1));
levels.set(levels.size() -i -1, tmp );
} */
}
}
/**
* Match levels
*
* @param records list of GridRecords
*
* @return true if they match
*/
boolean matchLevels(List records) {
// first create a new list
List levelList = new ArrayList( records.size());
for ( GridRecord record : records) {
Double d = new Double(record.getLevel1());
if ( !levelList.contains(d)) {
levelList.add(d);
}
}
Collections.sort(levelList);
if (positive.equals("down")) {
Collections.reverse(levelList);
}
// gotta equal existing list
return levelList.equals(levels);
}
/**
* Add dimensions to the netcdf file
*
* @param ncfile the netCDF file
* @param g the group to add to
*/
void addDimensionsToNetcdfFile(NetcdfFile ncfile, Group g) {
if (dontUseVertical) {
return;
}
int nlevs = levels.size();
ncfile.addDimension(g, new Dimension(verticalName, nlevs, true));
}
/**
* Add this coordinate system to the netCDF file
*
* @param ncfile the netCDF file
* @param g the group to add to
*/
void addToNetcdfFile(NetcdfFile ncfile, Group g) {
if (dontUseVertical) {
return;
}
if (g == null) {
g = ncfile.getRootGroup();
}
String dims = "time";
if ( !dontUseVertical) {
dims = dims + " " + verticalName;
}
if (hcs.isLatLon()) {
dims = dims + " lat lon";
} else {
dims = dims + " y x";
}
//Collections.sort( levels);
int nlevs = levels.size();
// ncfile.addDimension(g, new Dimension(verticalName, nlevs, true));
// coordinate axis and coordinate system Variable
Variable v = new Variable(ncfile, g, null, verticalName);
v.setDataType(DataType.DOUBLE);
v.addAttribute(new Attribute("long_name",
lookup.getLevelDescription(record)));
v.addAttribute(new Attribute("units", lookup.getLevelUnit(record)));
// positive attribute needed for CF-1 Height and Pressure
if (positive != null) {
v.addAttribute(new Attribute("positive", positive));
}
if (units != null) {
AxisType axisType;
if (SimpleUnit.isCompatible("millibar", units)) {
axisType = AxisType.Pressure;
} else if (SimpleUnit.isCompatible("m", units)) {
axisType = AxisType.Height;
} else {
axisType = AxisType.GeoZ;
}
v.addAttribute(
new Attribute(
"grid_level_type",
Integer.toString(record.getLevelType1())));
v.addAttribute(new Attribute(_Coordinate.AxisType,
axisType.toString()));
v.addAttribute(new Attribute(_Coordinate.Axes, dims));
if ( !hcs.isLatLon()) {
v.addAttribute(new Attribute(_Coordinate.Transforms,
hcs.getGridName()));
}
}
double[] data = new double[nlevs];
for (int i = 0; i < levels.size(); i++) {
Double d = (Double) levels.get(i);
data[i] = d.doubleValue();
}
Array dataArray = Array.factory(DataType.DOUBLE, new int[] { nlevs }, data);
v.setDimensions(verticalName);
v.setCachedData(dataArray, false);
ncfile.addVariable(g, v);
// look for vertical transforms
if (record.getLevelType1() == 109) {
findCoordinateTransform(g, "Pressure", record.getLevelType1());
}
}
/**
* Find the coordinate transform
*
* @param g group to check
* @param nameStartsWith beginning of name
* @param levelType type of level
*/
void findCoordinateTransform(Group g, String nameStartsWith,
int levelType) {
// look for variable that uses this coordinate
List vars = g.getVariables();
for (Variable v : vars) {
if (v.getName().equals(nameStartsWith)) {
Attribute att = v.findAttribute("grid_level_type");
if ((att == null)
|| (att.getNumericValue().intValue() != levelType)) {
continue;
}
v.addAttribute(new Attribute(_Coordinate.TransformType,
"Vertical"));
v.addAttribute(new Attribute("transform_name",
"Existing3DField"));
}
}
}
/**
* Get the index of a particular GridRecord
*
* @param record record to find
*
* @return the index or -1
*/
int getIndex(GridRecord record) {
Double d = new Double(record.getLevel1());
return levels.indexOf(d);
}
}
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