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The NetCDF-Java Library is a Java interface to NetCDF files,
as well as to many other types of scientific data formats.
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/*
* Copyright 1998-2009 University Corporation for Atmospheric Research/Unidata
*
* Portions of this software were developed by the Unidata Program at the
* University Corporation for Atmospheric Research.
*
* Access and use of this software shall impose the following obligations
* and understandings on the user. The user is granted the right, without
* any fee or cost, to use, copy, modify, alter, enhance and distribute
* this software, and any derivative works thereof, and its supporting
* documentation for any purpose whatsoever, provided that this entire
* notice appears in all copies of the software, derivative works and
* supporting documentation. Further, UCAR requests that the user credit
* UCAR/Unidata in any publications that result from the use of this
* software or in any product that includes this software. The names UCAR
* and/or Unidata, however, may not be used in any advertising or publicity
* to endorse or promote any products or commercial entity unless specific
* written permission is obtained from UCAR/Unidata. The user also
* understands that UCAR/Unidata is not obligated to provide the user with
* any support, consulting, training or assistance of any kind with regard
* to the use, operation and performance of this software nor to provide
* the user with any updates, revisions, new versions or "bug fixes."
*
* THIS SOFTWARE IS PROVIDED BY UCAR/UNIDATA "AS IS" AND ANY EXPRESS OR
* IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
* WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
* DISCLAIMED. IN NO EVENT SHALL UCAR/UNIDATA BE LIABLE FOR ANY SPECIAL,
* INDIRECT OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING
* FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT,
* NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION
* WITH THE ACCESS, USE OR PERFORMANCE OF THIS SOFTWARE.
*/
package ucar.atd.dorade;
import java.io.RandomAccessFile;
/**
* Title: DoradePARM
* Description: DORADE parameter descriptor
* Copyright: Copyright (c) 2003
* Company: University Corporation for Atmospheric Research
* @author Chris Burghart
* @version $Revision:51 $ $Date:2006-07-12 17:13:13Z $
*/
/* $Id:DoradePARM.java 51 2006-07-12 17:13:13Z caron $ */
public class DoradePARM extends DoradeDescriptor {
/**
* Bad data value flag returned by getParamValues().
*/
public static final float BAD_VALUE = Float.MAX_VALUE;
private String paramName;
private String paramDescription;
private String unitName;
private short usedPRTs;
private short usedFrequencies;
private float rcvrBandwidth; // MHz
private short pulseWidth; // m
private short polarization; // 0 horizontal, 1 vertical, 2 circular,
// 3 elliptical
private short nSamples;
private short binaryFormat; // 1 8-bit integer, 2 16-bit integer,
// 3 24-bit integer, 4 32-bit float,
// 5 16-bit float
/**
* 8-bit signed integer format.
*/
public static final int FORMAT_8BIT_INT = 1;
/**
* 16-bit signed integer format.
*/
public static final int FORMAT_16BIT_INT = 2;
/**
* 32-bit signed integer format.
*/
public static final int FORMAT_32BIT_INT = 3;
/**
* 32-bit IEEE float format.
*/
public static final int FORMAT_32BIT_FLOAT = 4;
/**
* 16-bit IEEE float format.
*/
public static final int FORMAT_16BIT_FLOAT = 5;
private String thresholdParamName;
private float thresholdValue;
private float scale;
private float bias;
private int badDataFlag;
private DoradeRADD myRADD;
public DoradePARM(RandomAccessFile file, boolean littleEndianData,
DoradeRADD radd)
throws DescriptorException {
byte[] data = readDescriptor(file, littleEndianData, "PARM");
myRADD = radd;
//
// unpack
//
paramName = new String(data, 8, 8).trim();
paramDescription = new String(data, 16, 40).trim();
unitName = new String(data, 56, 8).trim();
usedPRTs = grabShort(data, 64);
usedFrequencies = grabShort(data, 66);
rcvrBandwidth = grabFloat(data, 68);
pulseWidth = grabShort(data, 72);
polarization = grabShort(data, 74);
nSamples = grabShort(data, 76);
binaryFormat = grabShort(data, 78);
thresholdParamName = new String(data, 80, 8).trim();
thresholdValue = grabFloat(data, 88);
scale = grabFloat(data, 92);
bias = grabFloat(data, 96);
badDataFlag = grabInt(data, 100);
//
// debugging output
//
if (verbose)
System.out.println(this);
}
public String toString() {
String s = "PARM\n";
s += " param name: " + paramName + "\n";
s += " param description: " + paramDescription + "\n";
s += " unit name: " + unitName + "\n";
s += " used PRTs: " + usedPRTs + "\n";
s += " used frequencies: " + usedFrequencies + "\n";
s += " receiver bandwidth: " + rcvrBandwidth + "\n";
s += " pulse width: " + pulseWidth + "\n";
s += " polarization: " + polarization + "\n";
s += " number of samples: " + nSamples + "\n";
s += " binary format: " + binaryFormat + "\n";
s += " threshold parameter: " + thresholdParamName + "\n";
s += " threshold value: " + thresholdValue + "\n";
s += " scale: " + scale + "\n";
s += " bias: " + bias + "\n";
s += " bad data flag: " + badDataFlag;
return s;
}
/**
* Get the name of this parameter.
* @return the name of the parameter
*/
public String getName() {
return paramName;
}
// unidata added
public int getBadDataFlag() {
return badDataFlag;
}
// unidata added
public float getThresholdValue() {
return thresholdValue;
}
// unidata added
public int getPolarization() {
return polarization;
}
// unidata added
public float getScale() {
return scale;
}
// unidata added
public String getUnitName() {
return unitName;
}
// unidata added
public int getusedPRTs() {
return usedPRTs;
}
// unidata added
public int getusedFrequencies() {
return usedFrequencies;
}
// unidata added
public int getnSamples() {
return nSamples;
}
// unidata added
public String getthresholdParamName() {
return thresholdParamName;
}
/**
* Get the units string for this parameter.
* @return the units string
*/
public String getUnits() {
return unitName;
}
/**
* Get the long description for this parameter.
* @return the description string
*/
public String getDescription() {
return paramDescription;
}
/**
* Get the binary format used for encoding this parameter.
* Legal values are:
* FORMAT_8BIT_INT
* FORMAT_16BIT_INT
* FORMAT_32BIT_INT
* FORMAT_16BIT_FLOAT
* FORMAT_32BIT_FLOAT
* @return the binary format for this parameter
*/
public int getBinaryFormat() {
return binaryFormat;
}
/**
* Get the number of cells in a ray.
* @return the number of cells in a ray
*/
public int getNCells() {
return myRADD.getNCells();
}
/**
* Get the cell spacing. An exception is thrown if the cell spacing
* is not constant.
* @return the cell spacing, in meters
* @throws DescriptorException if the cell spacing is not constant.
*/
public float getCellSpacing() throws DescriptorException {
return myRADD.getCellSpacing();
}
/**
* Get the unpacked data values for a selected parameter.
* @param rdat the name of the desired parameter
* @return the unpacked data values for all cells, using BAD_VALUE
* for bad data cells
* @throws DescriptorException
*/
public float[] getParamValues(DoradeRDAT rdat)
throws DescriptorException {
return getParamValues(rdat, null);
}
/**
* Get the unpacked data values for a selected parameter.
* @param rdat the name of the desired parameter
* @param workingArray If non-null and the same length as needed then use this.
* @return the unpacked data values for all cells, using BAD_VALUE
* for bad data cells
* @throws DescriptorException
*/
public float[] getParamValues(DoradeRDAT rdat,float[] workingArray)
throws DescriptorException {
if (! paramName.equals(rdat.getParamName()))
throw new DescriptorException("parameter name mismatch");
byte[] paramData = rdat.getRawData();
int nCells = myRADD.getNCells();
float[] values;
if(workingArray!=null && workingArray.length == nCells) {
values = workingArray;
} else {
values = new float[nCells];
}
short[] svalues = null;
if (myRADD.getCompressionScheme() == DoradeRADD.COMPRESSION_HRD) {
if (binaryFormat != DoradePARM.FORMAT_16BIT_INT) {
throw new DescriptorException("Cannot unpack " +
"compressed data with binary format " +
binaryFormat);
}
svalues = uncompressHRD(paramData, nCells);
}
for (int cell = 0; cell < nCells; cell++) {
switch (binaryFormat) {
case DoradePARM.FORMAT_8BIT_INT:
byte bval = paramData[cell];
values[cell] = (bval == badDataFlag) ?
BAD_VALUE : (bval - bias) / scale;
break;
case DoradePARM.FORMAT_16BIT_INT:
short sval = (svalues != null) ?
svalues[cell] : grabShort(paramData, 2 * cell);
values[cell] = (sval == badDataFlag) ?
BAD_VALUE : (sval - bias) / scale;
break;
case DoradePARM.FORMAT_32BIT_INT:
int ival = grabInt(paramData, 4 * cell);
values[cell] = (ival == badDataFlag) ?
BAD_VALUE : (ival - bias) / scale;
break;
case DoradePARM.FORMAT_32BIT_FLOAT:
float fval = grabFloat(paramData, 4 * cell);
values[cell] = (fval == badDataFlag) ?
BAD_VALUE : (fval - bias) / scale;
break;
case DoradePARM.FORMAT_16BIT_FLOAT:
throw new DescriptorException("can't unpack 16-bit " +
"float data yet");
default:
throw new DescriptorException("bad binary format (" +
binaryFormat + ")");
}
}
return values;
}
/**
* Unpack MIT/HRD-compressed data into an array of exactly nCells shorts.
* @param compressedData the raw HRD-compressed data array
* @return an array of nCells unpacked short values
* @throws DescriptorException
*/
private short[] uncompressHRD(byte[] compressedData, int nCells)
throws DescriptorException {
short[] svalues = new short[nCells];
int cPos = 0; // position in the compressed data, in bytes
int nextCell = 0;
int runLength;
for (;; nextCell += runLength) {
//
// Each run begins with a 16-bin run descriptor. The
// high order bit is set if the run consists of bad flags.
// The remaining 15 bits tell the length of the run.
// A run length of 1 indicates the end of compressed data.
//
short runDescriptor = grabShort(compressedData, cPos);
cPos += 2;
boolean runHasGoodValues = ((runDescriptor & 0x8000) != 0);
runLength = runDescriptor & 0x7fff;
if (runLength == 1)
break;
//
// Sanity check on run length
//
if ((nextCell + runLength) > nCells)
throw new DescriptorException("attempt to unpack " +
"too many cells");
//
// If the run contains good values, then the next runLength
// values in the compressed data stream are real values. Otherwise
// we need to fill with runLength bad value flags.
//
for (int cell = nextCell; cell < nextCell + runLength; cell++) {
if (runHasGoodValues) {
svalues[cell] = grabShort(compressedData, cPos);
cPos += 2;
} else {
svalues[cell] = (short)badDataFlag;
}
}
}
//
// Fill the remainder of the array (if any) with bad value flags
//
for (int cell = nextCell; cell < nCells; cell++)
svalues[cell] = (short)badDataFlag;
return svalues;
}
}