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The NetCDF-Java Library is a Java interface to NetCDF files,
as well as to many other types of scientific data formats.
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/*
* Copyright 1998-2009 University Corporation for Atmospheric Research/Unidata
*
* Portions of this software were developed by the Unidata Program at the
* University Corporation for Atmospheric Research.
*
* Access and use of this software shall impose the following obligations
* and understandings on the user. The user is granted the right, without
* any fee or cost, to use, copy, modify, alter, enhance and distribute
* this software, and any derivative works thereof, and its supporting
* documentation for any purpose whatsoever, provided that this entire
* notice appears in all copies of the software, derivative works and
* supporting documentation. Further, UCAR requests that the user credit
* UCAR/Unidata in any publications that result from the use of this
* software or in any product that includes this software. The names UCAR
* and/or Unidata, however, may not be used in any advertising or publicity
* to endorse or promote any products or commercial entity unless specific
* written permission is obtained from UCAR/Unidata. The user also
* understands that UCAR/Unidata is not obligated to provide the user with
* any support, consulting, training or assistance of any kind with regard
* to the use, operation and performance of this software nor to provide
* the user with any updates, revisions, new versions or "bug fixes."
*
* THIS SOFTWARE IS PROVIDED BY UCAR/UNIDATA "AS IS" AND ANY EXPRESS OR
* IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
* WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
* DISCLAIMED. IN NO EVENT SHALL UCAR/UNIDATA BE LIABLE FOR ANY SPECIAL,
* INDIRECT OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING
* FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT,
* NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION
* WITH THE ACCESS, USE OR PERFORMANCE OF THIS SOFTWARE.
*/
package ucar.ma2;
import java.nio.ByteBuffer;
import java.nio.ShortBuffer;
/**
* Concrete implementation of Array specialized for shorts.
* Data storage is with 1D java array of shorts.
*
* issues: what should we do if a conversion loses accuracy? nothing ? Exception ?
*
* @author caron
* @see Array
*/
public class ArrayShort extends Array {
// package private. use Array.factory()
static ArrayShort factory(Index index) {
return ArrayShort.factory(index, null);
}
/* create new ArrayShort with given indexImpl and backing store.
* Should be private.
* @param index use this Index
* @param stor. use this storage. if null, allocate.
* @return. new ArrayShort.D or ArrayShort object.
*/
static ArrayShort factory(Index index, short[] storage) {
switch (index.getRank()) {
case 0:
return new ArrayShort.D0(index, storage);
case 1:
return new ArrayShort.D1(index, storage);
case 2:
return new ArrayShort.D2(index, storage);
case 3:
return new ArrayShort.D3(index, storage);
case 4:
return new ArrayShort.D4(index, storage);
case 5:
return new ArrayShort.D5(index, storage);
case 6:
return new ArrayShort.D6(index, storage);
case 7:
return new ArrayShort.D7(index, storage);
default:
return new ArrayShort(index, storage);
}
}
///////////////////////////////////////////////////////////////////////////////
protected short[] storage;
/**
* Create a new Array of type short and the given shape.
* dimensions.length determines the rank of the new Array.
*
* @param dimensions the shape of the Array.
*/
public ArrayShort(int[] dimensions) {
super(dimensions);
storage = new short[(int) indexCalc.getSize()];
}
/**
* Create a new Array using the given IndexArray and backing store.
* used for sections. Trusted package private.
*
* @param ima use this IndexArray as the index
* @param data use this as the backing store
*/
ArrayShort(Index ima, short[] data) {
super(ima);
/* replace by something better
if (ima.getSize() != data.length)
throw new IllegalArgumentException("bad data length"); */
if (data != null)
storage = data;
else
storage = new short[(int) ima.getSize()];
}
/**
* create new Array with given indexImpl and same backing store
*/
protected Array createView(Index index) {
Array result = ArrayShort.factory(index, storage);
result.setUnsigned( isUnsigned());
return result;
}
/* Get underlying primitive array storage. CAUTION! You may invalidate your warrentee! */
public Object getStorage() {
return storage;
}
// copy from javaArray to storage using the iterator: used by factory( Object);
protected void copyFrom1DJavaArray(IndexIterator iter, Object javaArray) {
short[] ja = (short[]) javaArray;
for (int i = 0; i < ja.length; i++)
iter.setShortNext(ja[i]);
}
// copy to javaArray from storage using the iterator: used by copyToNDJavaArray;
protected void copyTo1DJavaArray(IndexIterator iter, Object javaArray) {
short[] ja = (short[]) javaArray;
for (int i = 0; i < ja.length; i++)
ja[i] = iter.getShortNext();
}
public ByteBuffer getDataAsByteBuffer() {
ByteBuffer bb = ByteBuffer.allocate((int) (2 * getSize()));
ShortBuffer ib = bb.asShortBuffer();
ib.put((short[]) get1DJavaArray(short.class)); // make sure its in canonical order
return bb;
}
/**
* Return the element class type
*/
public Class getElementType() {
return short.class;
}
/**
* Get the value at the specified index.
* @param i the index
* @return the value at the specified index.
*/
public short get(Index i) {
return storage[i.currentElement()];
}
/**
* Set the value at the specified index.
* @param i the index
* @param value set to this value
*/
public void set(Index i, short value) {
storage[i.currentElement()] = value;
}
public double getDouble(Index i) {
short val = storage[i.currentElement()];
return (double) (unsigned ? DataType.unsignedShortToInt(val) : val);
}
public void setDouble(Index i, double value) {
storage[i.currentElement()] = (short) value;
}
public float getFloat(Index i) {
short val = storage[i.currentElement()];
return (float) (unsigned ? DataType.unsignedShortToInt(val) : val);
}
public void setFloat(Index i, float value) {
storage[i.currentElement()] = (short) value;
}
public long getLong(Index i) {
short val = storage[i.currentElement()];
return (long) (unsigned ? DataType.unsignedShortToInt(val) : val);
}
public void setLong(Index i, long value) {
storage[i.currentElement()] = (short) value;
}
public int getInt(Index i) {
short val = storage[i.currentElement()];
return (int) (unsigned ? DataType.unsignedShortToInt(val) : val);
}
public void setInt(Index i, int value) {
storage[i.currentElement()] = (short) value;
}
public short getShort(Index i) {
return storage[i.currentElement()];
}
public void setShort(Index i, short value) {
storage[i.currentElement()] = value;
}
public byte getByte(Index i) {
return (byte) storage[i.currentElement()];
}
public void setByte(Index i, byte value) {
storage[i.currentElement()] = (short) value;
}
public char getChar(Index i) {
short val = storage[i.currentElement()];
return (char) (unsigned ? DataType.unsignedShortToInt(val) : val);
}
public void setChar(Index i, char value) {
storage[i.currentElement()] = (short) value;
}
/**
* not legal, throw ForbiddenConversionException
*/
public boolean getBoolean(Index i) {
throw new ForbiddenConversionException();
}
/**
* not legal, throw ForbiddenConversionException
*/
public void setBoolean(Index i, boolean value) {
throw new ForbiddenConversionException();
}
public Object getObject(Index i) {
return storage[i.currentElement()]; // Short
}
public void setObject(Index i, Object value) {
storage[i.currentElement()] = ((Number) value).shortValue();
}
// package private : mostly for iterators
public double getDouble(int index) {
short val = storage[index];
return (double) (unsigned ? DataType.unsignedShortToInt(val) : val);
}
public void setDouble(int index, double value) {
storage[index] = (short) value;
}
public float getFloat(int index) {
short val = storage[index];
return (float) (unsigned ? DataType.unsignedShortToInt(val) : val);
}
public void setFloat(int index, float value) {
storage[index] = (short) value;
}
public long getLong(int index) {
short val = storage[index];
return (long) (unsigned ? DataType.unsignedShortToInt(val) : val);
}
public void setLong(int index, long value) {
storage[index] = (short) value;
}
public int getInt(int index) {
short val = storage[index];
return (int) (unsigned ? DataType.unsignedShortToInt(val) : val);
}
public void setInt(int index, int value) {
storage[index] = (short) value;
}
public short getShort(int index) {
return storage[index];
}
public void setShort(int index, short value) {
storage[index] = value;
}
public byte getByte(int index) {
return (byte) storage[index];
}
public void setByte(int index, byte value) {
storage[index] = (short) value;
}
public char getChar(int index) {
short val = storage[index];
return (char) (unsigned ? DataType.unsignedShortToInt(val) : val);
}
public void setChar(int index, char value) {
storage[index] = (short) value;
}
public boolean getBoolean(int index) {
throw new ForbiddenConversionException();
}
public void setBoolean(int index, boolean value) {
throw new ForbiddenConversionException();
}
public Object getObject(int index) {
return getShort(index);
}
public void setObject(int index, Object value) {
storage[index] = ((Number) value).shortValue();
}
/**
* Concrete implementation of Array specialized for shorts, rank 0.
*/
public static class D0 extends ArrayShort {
private Index0D ix;
public D0() {
super(new int[]{});
ix = (Index0D) indexCalc;
}
private D0(Index i, short[] store) {
super(i, store);
ix = (Index0D) indexCalc;
}
public short get() {
return storage[ix.currentElement()];
}
public void set(short value) {
storage[ix.currentElement()] = value;
}
}
/**
* Concrete implementation of Array specialized for shorts, rank 1.
*/
public static class D1 extends ArrayShort {
private Index1D ix;
public D1(int len0) {
super(new int[]{len0});
ix = (Index1D) indexCalc;
}
private D1(Index i, short[] store) {
super(i, store);
ix = (Index1D) indexCalc;
}
public short get(int i) {
return storage[ix.setDirect(i)];
}
public void set(int i, short value) {
storage[ix.setDirect(i)] = value;
}
}
/**
* Concrete implementation of Array specialized for shorts, rank 2.
*/
public static class D2 extends ArrayShort {
private Index2D ix;
public D2(int len0, int len1) {
super(new int[]{len0, len1});
ix = (Index2D) indexCalc;
}
private D2(Index i, short[] store) {
super(i, store);
ix = (Index2D) indexCalc;
}
public short get(int i, int j) {
return storage[ix.setDirect(i, j)];
}
public void set(int i, int j, short value) {
storage[ix.setDirect(i, j)] = value;
}
}
/**
* Concrete implementation of Array specialized for shorts, rank 3.
*/
public static class D3 extends ArrayShort {
private Index3D ix;
public D3(int len0, int len1, int len2) {
super(new int[]{len0, len1, len2});
ix = (Index3D) indexCalc;
}
private D3(Index i, short[] store) {
super(i, store);
ix = (Index3D) indexCalc;
}
public short get(int i, int j, int k) {
return storage[ix.setDirect(i, j, k)];
}
public void set(int i, int j, int k, short value) {
storage[ix.setDirect(i, j, k)] = value;
}
}
/**
* Concrete implementation of Array specialized for shorts, rank 4.
*/
public static class D4 extends ArrayShort {
private Index4D ix;
public D4(int len0, int len1, int len2, int len3) {
super(new int[]{len0, len1, len2, len3});
ix = (Index4D) indexCalc;
}
private D4(Index i, short[] store) {
super(i, store);
ix = (Index4D) indexCalc;
}
public short get(int i, int j, int k, int l) {
return storage[ix.setDirect(i, j, k, l)];
}
public void set(int i, int j, int k, int l, short value) {
storage[ix.setDirect(i, j, k, l)] = value;
}
}
/**
* Concrete implementation of Array specialized for shorts, rank 5.
*/
public static class D5 extends ArrayShort {
private Index5D ix;
public D5(int len0, int len1, int len2, int len3, int len4) {
super(new int[]{len0, len1, len2, len3, len4});
ix = (Index5D) indexCalc;
}
private D5(Index i, short[] store) {
super(i, store);
ix = (Index5D) indexCalc;
}
public short get(int i, int j, int k, int l, int m) {
return storage[ix.setDirect(i, j, k, l, m)];
}
public void set(int i, int j, int k, int l, int m, short value) {
storage[ix.setDirect(i, j, k, l, m)] = value;
}
}
/**
* Concrete implementation of Array specialized for shorts, rank 6.
*/
public static class D6 extends ArrayShort {
private Index6D ix;
public D6(int len0, int len1, int len2, int len3, int len4, int len5) {
super(new int[]{len0, len1, len2, len3, len4, len5});
ix = (Index6D) indexCalc;
}
private D6(Index i, short[] store) {
super(i, store);
ix = (Index6D) indexCalc;
}
public short get(int i, int j, int k, int l, int m, int n) {
return storage[ix.setDirect(i, j, k, l, m, n)];
}
public void set(int i, int j, int k, int l, int m, int n, short value) {
storage[ix.setDirect(i, j, k, l, m, n)] = value;
}
}
/**
* Concrete implementation of Array specialized for shorts, rank 7.
*/
public static class D7 extends ArrayShort {
private Index7D ix;
public D7(int len0, int len1, int len2, int len3, int len4, int len5, int len6) {
super(new int[]{len0, len1, len2, len3, len4, len5, len6});
ix = (Index7D) indexCalc;
}
private D7(Index i, short[] store) {
super(i, store);
ix = (Index7D) indexCalc;
}
public short get(int i, int j, int k, int l, int m, int n, int o) {
return storage[ix.setDirect(i, j, k, l, m, n, o)];
}
public void set(int i, int j, int k, int l, int m, int n, int o, short value) {
storage[ix.setDirect(i, j, k, l, m, n, o)] = value;
}
}
}